A citation-based method for searching scientific literature

Songlei Liu, Sukanya Punthambaker, Eswar P R Iyer, Thomas Ferrante, Daniel Goodwin, Daniel Fürth, Andrew C Pawlowski, Kunal Jindal, Jenny M Tam, Lauren Mifflin, Shahar Alon, Anubhav Sinha, Asmamaw T Wassie, Fei Chen, Anne Cheng, Valerie Willocq, Katharina Meyer, King-Hwa Ling, Conor K Camplisson, Richie E Kohman, John Aach, Je Hyuk Lee, Bruce A Yankner, Edward S Boyden, George M Church. Nucleic Acids Res 2021
Times Cited: 1







List of co-cited articles
articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Simultaneous epitope and transcriptome measurement in single cells.
Marlon Stoeckius, Christoph Hafemeister, William Stephenson, Brian Houck-Loomis, Pratip K Chattopadhyay, Harold Swerdlow, Rahul Satija, Peter Smibert. Nat Methods 2017
739
100

Cell Hashing with barcoded antibodies enables multiplexing and doublet detection for single cell genomics.
Marlon Stoeckius, Shiwei Zheng, Brian Houck-Loomis, Stephanie Hao, Bertrand Z Yeung, William M Mauck, Peter Smibert, Rahul Satija. Genome Biol 2018
209
100

Endemic mycoses in patients with STAT3-mutated hyper-IgE (Job) syndrome.
Camila D Odio, Ki Lee Milligan, Katherine McGowan, Amanda K Rudman Spergel, Rachel Bishop, Lisa Boris, Amanda Urban, Pamela Welch, Theo Heller, David Kleiner,[...]. J Allergy Clin Immunol 2015
29
100

Interleukin 1α Is Critical for Resistance against Highly Virulent Aspergillus fumigatus Isolates.
Alayna K Caffrey-Carr, Caitlin H Kowalski, Sarah R Beattie, Nathan A Blaseg, Chanell R Upshaw, Arsa Thammahong, Hannah E Lust, Yi-Wei Tang, Tobias M Hohl, Robert A Cramer,[...]. Infect Immun 2017
34
100

A novel method for expansion and differentiation of mouse tracheal epithelial cells in culture.
Evelien Eenjes, Tinne C J Mertens, Marjon J Buscop-van Kempen, Yolanda van Wijck, Christian Taube, Robbert J Rottier, Pieter S Hiemstra. Sci Rep 2018
13
100

Overexpressing mouse model demonstrates the protective role of Muc5ac in the lungs.
Camille Ehre, Erin N Worthington, Rachael M Liesman, Barbara R Grubb, Diane Barbier, Wanda K O'Neal, Jean-Michel Sallenave, Raymond J Pickles, Richard C Boucher. Proc Natl Acad Sci U S A 2012
106
100

A parasitic phase-specific adhesin of Coccidioides immitis contributes to the virulence of this respiratory Fungal pathogen.
Chiung-Yu Hung, Jieh-Juen Yu, Kalpathi R Seshan, Utz Reichard, Garry T Cole. Infect Immun 2002
89
100

Comprehensive single-cell transcriptional profiling of a multicellular organism.
Junyue Cao, Jonathan S Packer, Vijay Ramani, Darren A Cusanovich, Chau Huynh, Riza Daza, Xiaojie Qiu, Choli Lee, Scott N Furlan, Frank J Steemers,[...]. Science 2017
465
100

Immune Response to Coccidioidomycosis and the Development of a Vaccine.
Natalia Castro-Lopez, Chiung-Yu Hung. Microorganisms 2017
15
100

Lung Epithelial Cells Coordinate Innate Lymphocytes and Immunity against Pulmonary Fungal Infection.
Nydiaris Hernández-Santos, Darin L Wiesner, J Scott Fites, Andrew J McDermott, Thomas Warner, Marcel Wüthrich, Bruce S Klein. Cell Host Microbe 2019
5
100

Role of lymphocytes in macrophage-induced killing of Coccidioides immitis in vitro.
L Beaman, E Benjamini, D Pappagianis. Infect Immun 1981
35
100

Refractory disseminated coccidioidomycosis and mycobacteriosis in interferon-gamma receptor 1 deficiency.
Donald C Vinh, Fares Masannat, Robert B Dzioba, John N Galgiani, Steven M Holland. Clin Infect Dis 2009
74
100

Images of the month: The conundrum of chronic coccidioidomycosis.
Oluwabusola M Bolaji, Nurul I Zainudin, Susan Snape, Gauri Saini, Vadsala Baskaran. Clin Med (Lond) 2021
1
100

In situ sequencing for RNA analysis in preserved tissue and cells.
Rongqin Ke, Marco Mignardi, Alexandra Pacureanu, Jessica Svedlund, Johan Botling, Carolina Wählby, Mats Nilsson. Nat Methods 2013
300
100

Coccidioides Endospores and Spherules Draw Strong Chemotactic, Adhesive, and Phagocytic Responses by Individual Human Neutrophils.
Cheng-Yuk Lee, George R Thompson, Christine J Hastey, Gregory C Hodge, Jennine M Lunetta, Demosthenes Pappagianis, Volkmar Heinrich. PLoS One 2015
29
100



The first line of defense: effector pathways of anti-fungal innate immunity.
Rebecca A Ward, Jatin M Vyas. Curr Opin Microbiol 2020
5
100

Interleukin-1 receptor but not Toll-like receptor 2 is essential for MyD88-dependent Th17 immunity to Coccidioides infection.
Chiung-Yu Hung, María del Pilar Jiménez-Alzate, Angel Gonzalez, Marcel Wüthrich, Bruce S Klein, Garry T Cole. Infect Immun 2014
26
100

Muc5b-deficient mice develop early histological lung abnormalities.
Hélène Valque, Valérie Gouyer, Catherine Duez, Christophe Leboeuf, Philippe Marquillies, Marc Le Bert, Ségolène Plet, Bernhard Ryffel, Anne Janin, Frédéric Gottrand,[...]. Biol Open 2019
5
100

Flow Cytometric Analysis of Protective T-Cell Response Against Pulmonary Coccidioides Infection.
Chiung-Yu Hung, Karen L Wozniak, Garry T Cole. Methods Mol Biol 2016
3
100

RNAscope: a novel in situ RNA analysis platform for formalin-fixed, paraffin-embedded tissues.
Fay Wang, John Flanagan, Nan Su, Li-Chong Wang, Son Bui, Allissa Nielson, Xingyong Wu, Hong-Thuy Vo, Xiao-Jun Ma, Yuling Luo. J Mol Diagn 2012
100

Viable spores of Coccidioides posadasii Δcps1 are required for vaccination and provide long lasting immunity.
Lisa F Shubitz, Daniel A Powell, Hien T Trinh, M Lourdes Lewis, Marc J Orbach, Jeffrey A Frelinger, John N Galgiani. Vaccine 2018
9
100

TNF-α inhibits the growth of Legionella pneumophila in airway epithelial cells by inducing apoptosis.
Yasuhide Kawamoto, Yoshitomo Morinaga, Yumiko Kimura, Norihito Kaku, Kosuke Kosai, Naoki Uno, Hiroo Hasegawa, Katsunori Yanagihara. J Infect Chemother 2017
9
100

Dual SMAD Signaling Inhibition Enables Long-Term Expansion of Diverse Epithelial Basal Cells.
Hongmei Mou, Vladimir Vinarsky, Purushothama Rao Tata, Karissa Brazauskas, Soon H Choi, Adrianne K Crooke, Bing Zhang, George M Solomon, Brett Turner, Hermann Bihler,[...]. Cell Stem Cell 2016
167
100

Coccidioidomycosis mimicking lung cancer.
Björn Petrini, C Magnus Sköld, Ulf Bronner, Göran Elmberger. Respiration 2003
11
100

An agonist of human complement fragment C5a enhances vaccine immunity against Coccidioides infection.
Chiung-Yu Hung, Brady J Hurtgen, Michael Bellecourt, Sam D Sanderson, Edward L Morgan, Garry T Cole. Vaccine 2012
36
100

Quantification of HER2 and estrogen receptor heterogeneity in breast cancer by single-molecule RNA fluorescence in situ hybridization.
Laura Annaratone, Michele Simonetti, Erik Wernersson, Caterina Marchiò, Silvano Garnerone, Maria Stella Scalzo, Magda Bienko, Roberto Chiarle, Anna Sapino, Nicola Crosetto. Oncotarget 2017
13
100


GeoMx™ RNA Assay: High Multiplex, Digital, Spatial Analysis of RNA in FFPE Tissue.
Daniel R Zollinger, Stan E Lingle, Kristina Sorg, Joseph M Beechem, Christopher R Merritt. Methods Mol Biol 2020
7
100

Interleukin-8 Receptor 2 (IL-8R2)-Deficient Mice Are More Resistant to Pulmonary Coccidioidomycosis than Control Mice.
Aaron F Carlin, Suganya Viriyakosol, Sharon Okamoto, Lorraine Walls, Joshua Fierer. Infect Immun 2020
1
100

A Genome-wide Framework for Mapping Gene Regulation via Cellular Genetic Screens.
Molly Gasperini, Andrew J Hill, José L McFaline-Figueroa, Beth Martin, Seungsoo Kim, Melissa D Zhang, Dana Jackson, Anh Leith, Jacob Schreiber, William S Noble,[...]. Cell 2019
133
100


Airway stem cells sense hypoxia and differentiate into protective solitary neuroendocrine cells.
Manjunatha Shivaraju, Udbhav K Chitta, Robert M H Grange, Isha H Jain, Diane Capen, Lan Liao, Jianming Xu, Fumito Ichinose, Warren M Zapol, Vamsi K Mootha,[...]. Science 2021
7
100


Aspergillus fumigatus Cell Wall Promotes Apical Airway Epithelial Recruitment of Human Neutrophils.
Michael B Feldman, Richard A Dutko, Michael A Wood, Rebecca A Ward, Hui Min Leung, Ryan F Snow, Denis J De La Flor, Lael M Yonker, Jennifer L Reedy, Guillermo J Tearney,[...]. Infect Immun 2020
3
100

First Line of Defense: Innate Cell-Mediated Control of Pulmonary Aspergillosis.
Vanessa Espinosa, Amariliz Rivera. Front Microbiol 2016
47
100

Dectin-1 is required for resistance to coccidioidomycosis in mice.
Suganya Viriyakosol, Maria del Pilar Jimenez, Michael A Gurney, Mark E Ashbaugh, Joshua Fierer. mBio 2013
44
100

Recent advances in our understanding of the environmental, epidemiological, immunological, and clinical dimensions of coccidioidomycosis.
Chinh Nguyen, Bridget Marie Barker, Susan Hoover, David E Nix, Neil M Ampel, Jeffrey A Frelinger, Marc J Orbach, John N Galgiani. Clin Microbiol Rev 2013
136
100

A metalloproteinase of Coccidioides posadasii contributes to evasion of host detection.
Chiung-Yu Hung, Kalpathi R Seshan, Jieh-Juen Yu, Ruth Schaller, Jianmin Xue, Venkatesha Basrur, Malcolm J Gardner, Garry T Cole. Infect Immun 2005
70
100

The polymeric mucin Muc5ac is required for allergic airway hyperreactivity.
Christopher M Evans, Dorota S Raclawska, Fani Ttofali, Deborah R Liptzin, Ashley A Fletcher, Daniel N Harper, Maggie A McGing, Melissa M McElwee, Olatunji W Williams, Elizabeth Sanchez,[...]. Nat Commun 2015
145
100

Pulmonary neuroendocrine cells amplify allergic asthma responses.
Pengfei Sui, Darin L Wiesner, Jinhao Xu, Yan Zhang, Jinwoo Lee, Steven Van Dyken, Amber Lashua, Chuyue Yu, Bruce S Klein, Richard M Locksley,[...]. Science 2018
144
100

Spatially Resolved Transcriptomes-Next Generation Tools for Tissue Exploration.
Michaela Asp, Joseph Bergenstråhle, Joakim Lundeberg. Bioessays 2020
65
100

Glucan-Chitin Particles Enhance Th17 Response and Improve Protective Efficacy of a Multivalent Antigen (rCpa1) against Pulmonary Coccidioides posadasii Infection.
Chiung-Yu Hung, Hao Zhang, Natalia Castro-Lopez, Gary R Ostroff, Payam Khoshlenar, Ambily Abraham, Garry T Cole, Austin Negron, Thomas Forsthuber, Tao Peng,[...]. Infect Immun 2018
22
100

Early Events in Coccidioidomycosis.
Fariba M Donovan, Lisa Shubitz, Daniel Powell, Marc Orbach, Jeffrey Frelinger, John N Galgiani. Clin Microbiol Rev 2019
6
100

Allergic inflammatory memory in human respiratory epithelial progenitor cells.
Jose Ordovas-Montanes, Daniel F Dwyer, Sarah K Nyquist, Kathleen M Buchheit, Marko Vukovic, Chaarushena Deb, Marc H Wadsworth, Travis K Hughes, Samuel W Kazer, Eri Yoshimoto,[...]. Nature 2018
147
100

Coccidioidomycosis in selected immunosuppressed hosts.
Janis E Blair, Neil M Ampel, Susan E Hoover. Med Mycol 2019
16
100

Characterization of the Histoplasma capsulatum-induced granuloma.
Erika Heninger, Laura H Hogan, Jozsef Karman, Sinarack Macvilay, Bjork Hill, Jon P Woods, Matyas Sandor. J Immunol 2006
45
100


Dissecting Immune Circuits by Linking CRISPR-Pooled Screens with Single-Cell RNA-Seq.
Diego Adhemar Jaitin, Assaf Weiner, Ido Yofe, David Lara-Astiaso, Hadas Keren-Shaul, Eyal David, Tomer Meir Salame, Amos Tanay, Alexander van Oudenaarden, Ido Amit. Cell 2016
303
100


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.