A citation-based method for searching scientific literature

Xiao Yuan, Jinxi Wang, Yixuan Huang, Dangang Shangguan, Peng Zhang. Front Immunol 2021
Times Cited: 3







List of co-cited articles
8 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Integrating single-cell and spatial transcriptomics to elucidate intercellular tissue dynamics.
Sophia K Longo, Margaret G Guo, Andrew L Ji, Paul A Khavari. Nat Rev Genet 2021
55
100

Single-Cell Sequencing, an Advanced Technology in Lung Cancer Research.
Hao Wang, Die Meng, Haoyue Guo, Chenglong Sun, Peixin Chen, Minlin Jiang, Yi Xu, Jia Yu, Qiyu Fang, Jun Zhu,[...]. Onco Targets Ther 2021
3
66

Uncovering an Organ's Molecular Architecture at Single-Cell Resolution by Spatially Resolved Transcriptomics.
Jie Liao, Xiaoyan Lu, Xin Shao, Ling Zhu, Xiaohui Fan. Trends Biotechnol 2021
45
66

Visualization and analysis of gene expression in tissue sections by spatial transcriptomics.
Patrik L Ståhl, Fredrik Salmén, Sanja Vickovic, Anna Lundmark, José Fernández Navarro, Jens Magnusson, Stefania Giacomello, Michaela Asp, Jakub O Westholm, Mikael Huss,[...]. Science 2016
722
66

Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets.
Evan Z Macosko, Anindita Basu, Rahul Satija, James Nemesh, Karthik Shekhar, Melissa Goldman, Itay Tirosh, Allison R Bialas, Nolan Kamitaki, Emily M Martersteck,[...]. Cell 2015
66

Understanding mast cell heterogeneity at single cell resolution.
Gökhan Cildir, Kwok Ho Yip, Harshita Pant, Vinay Tergaonkar, Angel F Lopez, Damon J Tumes. Trends Immunol 2021
4
66

Applications of Single-Cell Omics to Dissect Tumor Microenvironment.
Tingting Guo, Weimin Li, Xuyu Cai. Front Genet 2020
7
66

Single-cell RNA sequencing demonstrates the molecular and cellular reprogramming of metastatic lung adenocarcinoma.
Nayoung Kim, Hong Kwan Kim, Kyungjong Lee, Yourae Hong, Jong Ho Cho, Jung Won Choi, Jung-Il Lee, Yeon-Lim Suh, Bo Mi Ku, Hye Hyeon Eum,[...]. Nat Commun 2020
141
66

Population Genomic- and Phylogenomic-Enabled Advances to Increase Insight Into Pathogen Biology and Epidemiology.
Remco Stam, Pierre Gladieux, Boris A Vinatzer, Erica M Goss, Neha Potnis, Thierry Candresse, Marin Talbot Brewer. Phytopathology 2021
3
33

Pinpointing Cell Identity in Time and Space.
Anca F Savulescu, Caron Jacobs, Yutaka Negishi, Laurianne Davignon, Musa M Mhlanga. Front Mol Biosci 2020
7
33

NanoReviser: An Error-Correction Tool for Nanopore Sequencing Based on a Deep Learning Algorithm.
Luotong Wang, Li Qu, Longshu Yang, Yiying Wang, Huaiqiu Zhu. Front Genet 2020
9
33

New avenues for systematically inferring cell-cell communication: through single-cell transcriptomics data.
Xin Shao, Xiaoyan Lu, Jie Liao, Huajun Chen, Xiaohui Fan. Protein Cell 2020
18
33

Methylation analysis of Klebsiella pneumoniae from Portuguese hospitals.
Anton Spadar, João Perdigão, Jody Phelan, James Charleston, Ana Modesto, Rita Elias, Paola Florez de Sessions, Martin L Hibberd, Susana Campino, Aida Duarte,[...]. Sci Rep 2021
2
50

Direct RNA sequencing.
Fatih Ozsolak, Adam R Platt, Dan R Jones, Jeffrey G Reifenberger, Lauryn E Sass, Peter McInerney, John F Thompson, Jayson Bowers, Mirna Jarosz, Patrice M Milos. Nature 2009
268
33

Chromatin accessibility dynamics in a model of human forebrain development.
Alexandro E Trevino, Nasa Sinnott-Armstrong, Jimena Andersen, Se-Jin Yoon, Nina Huber, Jonathan K Pritchard, Howard Y Chang, William J Greenleaf, Sergiu P Pașca. Science 2020
58
33

Genome-wide CpG density and DNA methylation analysis method (MeDIP, RRBS, and WGBS) comparisons.
Daniel Beck, Millissia Ben Maamar, Michael K Skinner. Epigenetics 2022
6
33



RNA-sequencing from single nuclei.
Rashel V Grindberg, Joyclyn L Yee-Greenbaum, Michael J McConnell, Mark Novotny, Andy L O'Shaughnessy, Georgina M Lambert, Marcos J Araúzo-Bravo, Jun Lee, Max Fishman, Gillian E Robbins,[...]. Proc Natl Acad Sci U S A 2013
159
33

PBSIM2: a simulator for long-read sequencers with a novel generative model of quality scores.
Yukiteru Ono, Kiyoshi Asai, Michiaki Hamada. Bioinformatics 2021
6
33

Long-read cDNA sequencing identifies functional pseudogenes in the human transcriptome.
Robin-Lee Troskie, Yohaann Jafrani, Tim R Mercer, Adam D Ewing, Geoffrey J Faulkner, Seth W Cheetham. Genome Biol 2021
8
33


Illuminating the dark side of the human transcriptome with long read transcript sequencing.
Richard I Kuo, Yuanyuan Cheng, Runxuan Zhang, John W S Brown, Jacqueline Smith, Alan L Archibald, David W Burt. BMC Genomics 2020
16
33

Investigation of Burkholderia cepacia Complex Methylomes via Single-Molecule, Real-Time Sequencing and Mutant Analysis.
Olga Mannweiler, Marta Pinto-Carbó, Martina Lardi, Kirsty Agnoli, Leo Eberl. J Bacteriol 2021
3
33

Applying genomic and transcriptomic advances to mitochondrial medicine.
William L Macken, Jana Vandrovcova, Michael G Hanna, Robert D S Pitceathly. Nat Rev Neurol 2021
8
33

The Versatility of SMRT Sequencing.
Matthew S Hestand, Adam Ameur. Genes (Basel) 2019
5
33

Iterative Reanalysis of Hypertrophic Cardiomyopathy Exome Data Reveals Causative Pathogenic Mitochondrial DNA Variants.
Luis R Lopes, David Murphy, Enrico Bugiardini, Reem Salem, Joanna Jager, Marta Futema, Mohammed Majid Akhtar, Konstantinos Savvatis, Cathy Woodward, Alan M Pittman,[...]. Circ Genom Precis Med 2021
1
100

Gamete binning: chromosome-level and haplotype-resolved genome assembly enabled by high-throughput single-cell sequencing of gamete genomes.
José A Campoy, Hequan Sun, Manish Goel, Wen-Biao Jiao, Kat Folz-Donahue, Nan Wang, Manuel Rubio, Chang Liu, Christian Kukat, David Ruiz,[...]. Genome Biol 2020
12
33

A survey of human brain transcriptome diversity at the single cell level.
Spyros Darmanis, Steven A Sloan, Ye Zhang, Martin Enge, Christine Caneda, Lawrence M Shuer, Melanie G Hayden Gephart, Ben A Barres, Stephen R Quake. Proc Natl Acad Sci U S A 2015
611
33

Single-Cell Gene Network Analysis and Transcriptional Landscape of MYCN-Amplified Neuroblastoma Cell Lines.
Daniele Mercatelli, Nicola Balboni, Alessandro Palma, Emanuela Aleo, Pietro Paolo Sanna, Giovanni Perini, Federico Manuel Giorgi. Biomolecules 2021
3
33

DNA methylation regulates associative reward learning.
Jeremy J Day, Daniel Childs, Mikael C Guzman-Karlsson, Mercy Kibe, Jerome Moulden, Esther Song, Absar Tahir, J David Sweatt. Nat Neurosci 2013
140
33


Advances and challenges in epigenomic single-cell sequencing applications.
Martin Philpott, Adam P Cribbs, Tom Brown, Tom Brown, Udo Oppermann. Curr Opin Chem Biol 2020
10
33

A Comparison for Dimensionality Reduction Methods of Single-Cell RNA-seq Data.
Ruizhi Xiang, Wencan Wang, Lei Yang, Shiyuan Wang, Chaohan Xu, Xiaowen Chen. Front Genet 2021
7
33

Social epigenomics: are we at an impasse?
Amy L Non. Epigenomics 2021
5
33

Genome of the Single Human Chromosome 18 as a "Gold Standard" for Its Transcriptome.
Ekaterina Ilgisonis, Nikita Vavilov, Elena Ponomarenko, Andrey Lisitsa, Ekaterina Poverennaya, Victor Zgoda, Sergey Radko, Alexander Archakov. Front Genet 2021
4
33

Insights Gained from Single-Cell Analysis of Immune Cells in the Tumor Microenvironment.
Xianwen Ren, Lei Zhang, Yuanyuan Zhang, Ziyi Li, Nathan Siemers, Zemin Zhang. Annu Rev Immunol 2021
13
33

From Oncogenic Signaling Pathways to Single-Cell Sequencing of Immune Cells: Changing the Landscape of Cancer Immunotherapy.
Afshin Derakhshani, Zeinab Rostami, Hossein Safarpour, Mahdi Abdoli Shadbad, Niloufar Sadat Nourbakhsh, Antonella Argentiero, Sina Taefehshokr, Neda Jalili Tabrizi, Omid Kooshkaki, Reza Vaezi Astamal,[...]. Molecules 2021
21
33

RNA Dysregulation: An Expanding Source of Cancer Immunotherapy Targets.
Yang Pan, Kathryn E Kadash-Edmondson, Robert Wang, John Phillips, Song Liu, Antoni Ribas, Richard Aplenc, Owen N Witte, Yi Xing. Trends Pharmacol Sci 2021
7
33

The central role of noncoding RNA in the brain.
Boris Guennewig, Antony A Cooper. Int Rev Neurobiol 2014
50
33

Field Carcinogenesis in Cancer Evolution: What the Cell Is Going On?
Ansam Sinjab, Guangchun Han, Linghua Wang, Humam Kadara. Cancer Res 2020
2
50

Detection of aberrant splicing events in RNA-seq data using FRASER.
Christian Mertes, Ines F Scheller, Vicente A Yépez, Muhammed H Çelik, Yingjiqiong Liang, Laura S Kremer, Mirjana Gusic, Holger Prokisch, Julien Gagneur. Nat Commun 2021
17
33

Imaging individual mRNA molecules using multiple singly labeled probes.
Arjun Raj, Patrick van den Bogaard, Scott A Rifkin, Alexander van Oudenaarden, Sanjay Tyagi. Nat Methods 2008
33

Treg-inducing capacity of genomic DNA of Bifidobacterium longum subsp. infantis.
Dongmei Li, Jie Cheng, Ziang Zhu, Marta Catalfamo, David Goerlitz, Oliver J Lawless, Luke Tallon, Lisa Sadzewicz, Richard Calderone, Joseph A Bellanti. Allergy Asthma Proc 2020
8
33

A pan-cancer single-cell transcriptional atlas of tumor infiltrating myeloid cells.
Sijin Cheng, Ziyi Li, Ranran Gao, Baocai Xing, Yunong Gao, Yu Yang, Shishang Qin, Lei Zhang, Hanqiang Ouyang, Peng Du,[...]. Cell 2021
66
33

Single-Cell Transcriptomics Supports a Role of CHD8 in Autism.
Anke Hoffmann, Dietmar Spengler. Int J Mol Sci 2021
2
50

Challenges, Strategies, and Perspectives for Reference-Independent Longitudinal Multi-Omic Microbiome Studies.
Susana Martínez Arbas, Susheel Bhanu Busi, Pedro Queirós, Laura de Nies, Malte Herold, Patrick May, Paul Wilmes, Emilie E L Muller, Shaman Narayanasamy. Front Genet 2021
1
100

Long-Read Sequencing Improves the Detection of Structural Variations Impacting Complex Non-Coding Elements of the Genome.
Ghausia Begum, Ammar Albanna, Asma Bankapur, Nasna Nassir, Richa Tambi, Bakhrom K Berdiev, Hosneara Akter, Noushad Karuvantevida, Barbara Kellam, Deena Alhashmi,[...]. Int J Mol Sci 2021
4
33

Machine Intelligence in Single-Cell Data Analysis: Advances and New Challenges.
Jiajia Liu, Zhiwei Fan, Weiling Zhao, Xiaobo Zhou. Front Genet 2021
5
33

Exploring the gene pool of Brassica napus by genomics-based approaches.
Dandan Hu, Jinjie Jing, Rod J Snowdon, Annaliese S Mason, Jinxiong Shen, Jinling Meng, Jun Zou. Plant Biotechnol J 2021
7
33


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.