A citation-based method for searching scientific literature

Megha Amar, Akula Bala Pramod, Nam-Kyung Yu, Victor Munive Herrera, Lily R Qiu, Patricia Moran-Losada, Pan Zhang, Cleber A Trujillo, Jacob Ellegood, Jorge Urresti, Kevin Chau, Jolene Diedrich, Jiaye Chen, Jessica Gutierrez, Jonathan Sebat, Dhakshin Ramanathan, Jason P Lerch, John R Yates, Alysson R Muotri, Lilia M Iakoucheva. Mol Psychiatry 2021
Times Cited: 3







List of co-cited articles
1 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Spatiotemporal 16p11.2 protein network implicates cortical late mid-fetal brain development and KCTD13-Cul3-RhoA pathway in psychiatric diseases.
Guan Ning Lin, Roser Corominas, Irma Lemmens, Xinping Yang, Jan Tavernier, David E Hill, Marc Vidal, Jonathan Sebat, Lilia M Iakoucheva. Neuron 2015
86
66

Inhibition of SRGAP2 function by its human-specific paralogs induces neoteny during spine maturation.
Cécile Charrier, Kaumudi Joshi, Jaeda Coutinho-Budd, Ji-Eun Kim, Nelle Lambert, Jacqueline de Marchena, Wei-Lin Jin, Pierre Vanderhaeghen, Anirvan Ghosh, Takayuki Sassa,[...]. Cell 2012
223
33

Proneural transcription factors regulate different steps of cortical neuron migration through Rnd-mediated inhibition of RhoA signaling.
Emilie Pacary, Julian Heng, Roberta Azzarelli, Philippe Riou, Diogo Castro, Mélanie Lebel-Potter, Carlos Parras, Donald M Bell, Anne J Ridley, Maddy Parsons,[...]. Neuron 2011
159
33

Spatial and temporal mapping of de novo mutations in schizophrenia to a fetal prefrontal cortical network.
Suleyman Gulsuner, Tom Walsh, Amanda C Watts, Ming K Lee, Anne M Thornton, Silvia Casadei, Caitlin Rippey, Hashem Shahin, Vishwajit L Nimgaonkar, Rodney C P Go,[...]. Cell 2013
358
33

Complex Oscillatory Waves Emerging from Cortical Organoids Model Early Human Brain Network Development.
Cleber A Trujillo, Richard Gao, Priscilla D Negraes, Jing Gu, Justin Buchanan, Sebastian Preissl, Allen Wang, Wei Wu, Gabriel G Haddad, Isaac A Chaim,[...]. Cell Stem Cell 2019
219
33


Mapping identifiers for the integration of genomic datasets with the R/Bioconductor package biomaRt.
Steffen Durinck, Paul T Spellman, Ewan Birney, Wolfgang Huber. Nat Protoc 2009
33

BioMart and Bioconductor: a powerful link between biological databases and microarray data analysis.
Steffen Durinck, Yves Moreau, Arek Kasprzyk, Sean Davis, Bart De Moor, Alvis Brazma, Wolfgang Huber. Bioinformatics 2005
945
33

Pervasive genetic interactions modulate neurodevelopmental defects of the autism-associated 16p11.2 deletion in Drosophila melanogaster.
Janani Iyer, Mayanglambam Dhruba Singh, Matthew Jensen, Payal Patel, Lucilla Pizzo, Emily Huber, Haley Koerselman, Alexis T Weiner, Paola Lepanto, Komal Vadodaria,[...]. Nat Commun 2018
22
33

A quantitative analysis software tool for mass spectrometry-based proteomics.
Sung Kyu Park, John D Venable, Tao Xu, John R Yates. Nat Methods 2008
301
33

A novel RhoA/ROCK-CPI-17-MEF2C signaling pathway regulates vascular smooth muscle cell gene expression.
Christina Pagiatakis, Joseph W Gordon, Saviz Ehyai, John C McDermott. J Biol Chem 2012
48
33

A radial glia-specific role of RhoA in double cortex formation.
Silvia Cappello, Christian R J Böhringer, Matteo Bergami, Karl-Klaus Conzelmann, Alexander Ghanem, Giulio Srubek Tomassy, Paola Arlotta, Marco Mainardi, Manuela Allegra, Matteo Caleo,[...]. Neuron 2012
121
33

Extracting Accurate Precursor Information for Tandem Mass Spectra by RawConverter.
Lin He, Jolene Diedrich, Yen-Yin Chu, John R Yates. Anal Chem 2015
143
33


The mutational constraint spectrum quantified from variation in 141,456 humans.
Konrad J Karczewski, Laurent C Francioli, Grace Tiao, Beryl B Cummings, Jessica Alföldi, Qingbo Wang, Ryan L Collins, Kristen M Laricchia, Andrea Ganna, Daniel P Birnbaum,[...]. Nature 2020
33

Human iPSC-Derived Cerebral Organoids Model Cellular Features of Lissencephaly and Reveal Prolonged Mitosis of Outer Radial Glia.
Marina Bershteyn, Tomasz J Nowakowski, Alex A Pollen, Elizabeth Di Lullo, Aishwarya Nene, Anthony Wynshaw-Boris, Arnold R Kriegstein. Cell Stem Cell 2017
271
33

Kctd13 deletion reduces synaptic transmission via increased RhoA.
Christine Ochoa Escamilla, Irina Filonova, Angela K Walker, Zhong X Xuan, Roopashri Holehonnur, Felipe Espinosa, Shunan Liu, Summer B Thyme, Isabel A López-García, Dorian B Mendoza,[...]. Nature 2017
59
33

Prickle1 promotes focal adhesion disassembly in cooperation with the CLASP-LL5β complex in migrating cells.
Boon Cheng Lim, Shinji Matsumoto, Hideki Yamamoto, Hiroki Mizuno, Junichi Kikuta, Masaru Ishii, Akira Kikuchi. J Cell Sci 2016
23
33

Genes influenced by MEF2C contribute to neurodevelopmental disease via gene expression changes that affect multiple types of cortical excitatory neurons.
Donna Cosgrove, Laura Whitton, Laura Fahey, Pilib Ó Broin, Gary Donohoe, Derek W Morris. Hum Mol Genet 2021
7
33


Regulation of cerebral cortex development by Rho GTPases: insights from in vivo studies.
Roberta Azzarelli, Thomas Kerloch, Emilie Pacary. Front Cell Neurosci 2015
27
33


ProLuCID: An improved SEQUEST-like algorithm with enhanced sensitivity and specificity.
T Xu, S K Park, J D Venable, J A Wohlschlegel, J K Diedrich, D Cociorva, B Lu, L Liao, J Hewel, X Han,[...]. J Proteomics 2015
253
33

CRISPR/Cas9-mediated heterozygous knockout of the autism gene CHD8 and characterization of its transcriptional networks in cerebral organoids derived from iPS cells.
Ping Wang, Ryan Mokhtari, Erika Pedrosa, Michael Kirschenbaum, Can Bayrak, Deyou Zheng, Herbert M Lachman. Mol Autism 2017
137
33

Wnt signaling in development and disease.
Jennifer L Freese, Darya Pino, Samuel J Pleasure. Neurobiol Dis 2010
131
33

Zika virus impairs growth in human neurospheres and brain organoids.
Patricia P Garcez, Erick Correia Loiola, Rodrigo Madeiro da Costa, Luiza M Higa, Pablo Trindade, Rodrigo Delvecchio, Juliana Minardi Nascimento, Rodrigo Brindeiro, Amilcar Tanuri, Stevens K Rehen. Science 2016
706
33

Association between microdeletion and microduplication at 16p11.2 and autism.
Lauren A Weiss, Yiping Shen, Joshua M Korn, Dan E Arking, David T Miller, Ragnheidur Fossdal, Evald Saemundsen, Hreinn Stefansson, Manuel A R Ferreira, Todd Green,[...]. N Engl J Med 2008
33

Functional impact of global rare copy number variation in autism spectrum disorders.
Dalila Pinto, Alistair T Pagnamenta, Lambertus Klei, Richard Anney, Daniele Merico, Regina Regan, Judith Conroy, Tiago R Magalhaes, Catarina Correia, Brett S Abrahams,[...]. Nature 2010
33

Insights into Autism Spectrum Disorder Genomic Architecture and Biology from 71 Risk Loci.
Stephan J Sanders, Xin He, A Jeremy Willsey, A Gulhan Ercan-Sencicek, Kaitlin E Samocha, A Ercument Cicek, Michael T Murtha, Vanessa H Bal, Somer L Bishop, Shan Dong,[...]. Neuron 2015
677
33


Regulation of cerebral cortical size and neuron number by fibroblast growth factors: implications for autism.
Flora M Vaccarino, Elena L Grigorenko, Karen Müller Smith, Hanna E Stevens. J Autism Dev Disord 2009
52
33

Behavioral abnormalities and circuit defects in the basal ganglia of a mouse model of 16p11.2 deletion syndrome.
Thomas Portmann, Mu Yang, Rong Mao, Georgia Panagiotakos, Jacob Ellegood, Gul Dolen, Patrick L Bader, Brad A Grueter, Carleton Goold, Elaine Fisher,[...]. Cell Rep 2014
125
33

The neurodegenerative disease protein ataxin-1 antagonizes the neuronal survival function of myocyte enhancer factor-2.
Timothy A Bolger, Xuan Zhao, Todd J Cohen, Chih-Cheng Tsai, Tso-Pang Yao. J Biol Chem 2007
33
33

Spatio-temporal transcriptome of the human brain.
Hyo Jung Kang, Yuka Imamura Kawasawa, Feng Cheng, Ying Zhu, Xuming Xu, Mingfeng Li, André M M Sousa, Mihovil Pletikos, Kyle A Meyer, Goran Sedmak,[...]. Nature 2011
33


Wnt signaling regulates neuronal differentiation of cortical intermediate progenitors.
Roeben N Munji, Youngshik Choe, Guangnan Li, Julie A Siegenthaler, Samuel J Pleasure. J Neurosci 2011
177
33

Getting to the Cores of Autism.
Lilia M Iakoucheva, Alysson R Muotri, Jonathan Sebat. Cell 2019
83
33

A general framework for weighted gene co-expression network analysis.
Bin Zhang, Steve Horvath. Stat Appl Genet Mol Biol 2005
33

G protein-coupled receptor 56 and collagen III, a receptor-ligand pair, regulates cortical development and lamination.
Rong Luo, Sung-Jin Jeong, Zhaohui Jin, Natalie Strokes, Shihong Li, Xianhua Piao. Proc Natl Acad Sci U S A 2011
177
33

FOXG1-Dependent Dysregulation of GABA/Glutamate Neuron Differentiation in Autism Spectrum Disorders.
Jessica Mariani, Gianfilippo Coppola, Ping Zhang, Alexej Abyzov, Lauren Provini, Livia Tomasini, Mariangela Amenduni, Anna Szekely, Dean Palejev, Michael Wilson,[...]. Cell 2015
571
33

The 16p11.2 deletion mouse model of autism exhibits altered cortical progenitor proliferation and brain cytoarchitecture linked to the ERK MAPK pathway.
Joanna Pucilowska, Joseph Vithayathil, Emmanuel J Tavares, Caitlin Kelly, J Colleen Karlo, Gary E Landreth. J Neurosci 2015
85
33

Cerebral organoids model human brain development and microcephaly.
Madeline A Lancaster, Magdalena Renner, Carol-Anne Martin, Daniel Wenzel, Louise S Bicknell, Matthew E Hurles, Tessa Homfray, Josef M Penninger, Andrew P Jackson, Juergen A Knoblich. Nature 2013
33

Transcriptomes of germinal zones of human and mouse fetal neocortex suggest a role of extracellular matrix in progenitor self-renewal.
Simone A Fietz, Robert Lachmann, Holger Brandl, Martin Kircher, Nikolay Samusik, Roland Schröder, Naharajan Lakshmanaperumal, Ian Henry, Johannes Vogt, Axel Riehn,[...]. Proc Natl Acad Sci U S A 2012
193
33

Integrative functional genomic analyses implicate specific molecular pathways and circuits in autism.
Neelroop N Parikshak, Rui Luo, Alice Zhang, Hyejung Won, Jennifer K Lowe, Vijayendran Chandran, Steve Horvath, Daniel H Geschwind. Cell 2013
586
33

Non-canonical Wnt signaling regulates neural stem cell quiescence during homeostasis and after demyelination.
Manideep Chavali, Michael Klingener, Alexandros G Kokkosis, Yury Garkun, Sylwia Felong, Arianna Maffei, Adan Aguirre. Nat Commun 2018
43
33

Large-Scale Exome Sequencing Study Implicates Both Developmental and Functional Changes in the Neurobiology of Autism.
F Kyle Satterstrom, Jack A Kosmicki, Jiebiao Wang, Michael S Breen, Silvia De Rubeis, Joon-Yong An, Minshi Peng, Ryan Collins, Jakob Grove, Lambertus Klei,[...]. Cell 2020
524
33


A Potential Contributory Role for Ciliary Dysfunction in the 16p11.2 600 kb BP4-BP5 Pathology.
Eugenia Migliavacca, Christelle Golzio, Katrin Männik, Ian Blumenthal, Edwin C Oh, Louise Harewood, Jack A Kosmicki, Maria Nicla Loviglio, Giuliana Giannuzzi, Loyse Hippolyte,[...]. Am J Hum Genet 2015
31
33

Human cerebral organoids recapitulate gene expression programs of fetal neocortex development.
J Gray Camp, Farhath Badsha, Marta Florio, Sabina Kanton, Tobias Gerber, Michaela Wilsch-Bräuninger, Eric Lewitus, Alex Sykes, Wulf Hevers, Madeline Lancaster,[...]. Proc Natl Acad Sci U S A 2015
487
33

The role of Rho GTPase proteins in CNS neuronal migration.
Eve-Ellen Govek, Mary E Hatten, Linda Van Aelst. Dev Neurobiol 2011
113
33


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.