A citation-based method for searching scientific literature

Michael Zimmermann, Kiran Raosaheb Patil, Athanasios Typas, Lisa Maier. Mol Syst Biol 2021
Times Cited: 5







List of co-cited articles
9 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific for colorectal cancer.
Jakob Wirbel, Paul Theodor Pyl, Ece Kartal, Konrad Zych, Alireza Kashani, Alessio Milanese, Jonas S Fleck, Anita Y Voigt, Albert Palleja, Ruby Ponnudurai,[...]. Nat Med 2019
255
40

Microbial abundance, activity and population genomic profiling with mOTUs2.
Alessio Milanese, Daniel R Mende, Lucas Paoli, Guillem Salazar, Hans-Joachim Ruscheweyh, Miguelangel Cuenca, Pascal Hingamp, Renato Alves, Paul I Costea, Luis Pedro Coelho,[...]. Nat Commun 2019
85
40

Extensive impact of non-antibiotic drugs on human gut bacteria.
Lisa Maier, Mihaela Pruteanu, Michael Kuhn, Georg Zeller, Anja Telzerow, Exene Erin Anderson, Ana Rita Brochado, Keith Conrad Fernandez, Hitomi Dose, Hirotada Mori,[...]. Nature 2018
651
40

Recovery of gut microbiota of healthy adults following antibiotic exposure.
Albert Palleja, Kristian H Mikkelsen, Sofia K Forslund, Alireza Kashani, Kristine H Allin, Trine Nielsen, Tue H Hansen, Suisha Liang, Qiang Feng, Chenchen Zhang,[...]. Nat Microbiol 2018
175
40

Population-level analysis of gut microbiome variation.
Gwen Falony, Marie Joossens, Sara Vieira-Silva, Jun Wang, Youssef Darzi, Karoline Faust, Alexander Kurilshikov, Marc Jan Bonder, Mireia Valles-Colomer, Doris Vandeputte,[...]. Science 2016
881
40

Genome-guided design of a defined mouse microbiota that confers colonization resistance against Salmonella enterica serovar Typhimurium.
Sandrine Brugiroux, Markus Beutler, Carina Pfann, Debora Garzetti, Hans-Joachim Ruscheweyh, Diana Ring, Manuel Diehl, Simone Herp, Yvonne Lötscher, Saib Hussain,[...]. Nat Microbiol 2016
140
40

Separating host and microbiome contributions to drug pharmacokinetics and toxicity.
Michael Zimmermann, Maria Zimmermann-Kogadeeva, Rebekka Wegmann, Andrew L Goodman. Science 2019
128
40

Diet-microbiota interactions and personalized nutrition.
Aleksandra A Kolodziejczyk, Danping Zheng, Eran Elinav. Nat Rev Microbiol 2019
189
40

Supplementation with Akkermansia muciniphila in overweight and obese human volunteers: a proof-of-concept exploratory study.
Clara Depommier, Amandine Everard, Céline Druart, Hubert Plovier, Matthias Van Hul, Sara Vieira-Silva, Gwen Falony, Jeroen Raes, Dominique Maiter, Nathalie M Delzenne,[...]. Nat Med 2019
452
40

Impact of commonly used drugs on the composition and metabolic function of the gut microbiota.
Arnau Vich Vila, Valerie Collij, Serena Sanna, Trishla Sinha, Floris Imhann, Arno R Bourgonje, Zlatan Mujagic, Daisy M A E Jonkers, Ad A M Masclee, Jingyuan Fu,[...]. Nat Commun 2020
130
20

IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies.
Lam-Tung Nguyen, Heiko A Schmidt, Arndt von Haeseler, Bui Quang Minh. Mol Biol Evol 2015
20

Intestinal microbiome is related to lifetime antibiotic use in Finnish pre-school children.
Katri Korpela, Anne Salonen, Lauri J Virta, Riina A Kekkonen, Kristoffer Forslund, Peer Bork, Willem M de Vos. Nat Commun 2016
313
20

The SIDER database of drugs and side effects.
Michael Kuhn, Ivica Letunic, Lars Juhl Jensen, Peer Bork. Nucleic Acids Res 2016
338
20

Colorectal Cancer and the Human Gut Microbiome: Reproducibility with Whole-Genome Shotgun Sequencing.
Emily Vogtmann, Xing Hua, Georg Zeller, Shinichi Sunagawa, Anita Y Voigt, Rajna Hercog, James J Goedert, Jianxin Shi, Peer Bork, Rashmi Sinha. PLoS One 2016
106
20

Neonatal antibiotic exposure impairs child growth during the first six years of life by perturbing intestinal microbial colonization.
Atara Uzan-Yulzari, Olli Turta, Anna Belogolovski, Oren Ziv, Christina Kunz, Sarah Perschbacher, Hadar Neuman, Edoardo Pasolli, Aia Oz, Hila Ben-Amram,[...]. Nat Commun 2021
29
20

Environment dominates over host genetics in shaping human gut microbiota.
Daphna Rothschild, Omer Weissbrod, Elad Barkan, Alexander Kurilshikov, Tal Korem, David Zeevi, Paul I Costea, Anastasia Godneva, Iris N Kalka, Noam Bar,[...]. Nature 2018
850
20

Nutritional preferences of human gut bacteria reveal their metabolic idiosyncrasies.
Melanie Tramontano, Sergej Andrejev, Mihaela Pruteanu, Martina Klünemann, Michael Kuhn, Marco Galardini, Paula Jouhten, Aleksej Zelezniak, Georg Zeller, Peer Bork,[...]. Nat Microbiol 2018
78
20

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample.
J Gregory Caporaso, Christian L Lauber, William A Walters, Donna Berg-Lyons, Catherine A Lozupone, Peter J Turnbaugh, Noah Fierer, Rob Knight. Proc Natl Acad Sci U S A 2011
20

Gut microbiome development along the colorectal adenoma-carcinoma sequence.
Qiang Feng, Suisha Liang, Huijue Jia, Andreas Stadlmayr, Longqing Tang, Zhou Lan, Dongya Zhang, Huihua Xia, Xiaoying Xu, Zhuye Jie,[...]. Nat Commun 2015
484
20

Antibiotics in early life alter the murine colonic microbiome and adiposity.
Ilseung Cho, Shingo Yamanishi, Laura Cox, Barbara A Methé, Jiri Zavadil, Kelvin Li, Zhan Gao, Douglas Mahana, Kartik Raju, Isabel Teitler,[...]. Nature 2012
926
20

[The clinical picture of postural hypotension].
W Gerhard, P von Smekal. Z Kreislaufforsch 1968
3
33

The Human Gut Microbiome: From Association to Modulation.
Thomas S B Schmidt, Jeroen Raes, Peer Bork. Cell 2018
248
20



The ChEMBL database in 2017.
Anna Gaulton, Anne Hersey, Michał Nowotka, A Patrícia Bento, Jon Chambers, David Mendez, Prudence Mutowo, Francis Atkinson, Louisa J Bellis, Elena Cibrián-Uhalte,[...]. Nucleic Acids Res 2017
781
20

Benzbromarone, an old uricosuric drug, inhibits human fatty acid binding protein 4 in vitro and lowers the blood glucose level in db/db mice.
Hai-yan Cai, Ting Wang, Jian-chun Zhao, Peng Sun, Gui-rui Yan, Hai-peng Ding, Ying-xia Li, He-yao Wang, Wei-liang Zhu, Kai-xian Chen. Acta Pharmacol Sin 2013
22
20

Busting the Myth of "Static vs Cidal": A Systemic Literature Review.
Noah Wald-Dickler, Paul Holtom, Brad Spellberg. Clin Infect Dis 2018
44
20

Analysis of Fusobacterium persistence and antibiotic response in colorectal cancer.
Susan Bullman, Chandra S Pedamallu, Ewa Sicinska, Thomas E Clancy, Xiaoyang Zhang, Diana Cai, Donna Neuberg, Katherine Huang, Fatima Guevara, Timothy Nelson,[...]. Science 2017
440
20

Basic local alignment search tool.
S F Altschul, W Gish, W Miller, E W Myers, D J Lipman. J Mol Biol 1990
20

Fiji: an open-source platform for biological-image analysis.
Johannes Schindelin, Ignacio Arganda-Carreras, Erwin Frise, Verena Kaynig, Mark Longair, Tobias Pietzsch, Stephan Preibisch, Curtis Rueden, Stephan Saalfeld, Benjamin Schmid,[...]. Nat Methods 2012
20

Next-Generation Beneficial Microbes: The Case of Akkermansia muciniphila.
Patrice D Cani, Willem M de Vos. Front Microbiol 2017
341
20

Species-specific activity of antibacterial drug combinations.
Ana Rita Brochado, Anja Telzerow, Jacob Bobonis, Manuel Banzhaf, André Mateus, Joel Selkrig, Emily Huth, Stefan Bassler, Jordi Zamarreño Beas, Matylda Zietek,[...]. Nature 2018
108
20

Gut microbiome influences efficacy of PD-1-based immunotherapy against epithelial tumors.
Bertrand Routy, Emmanuelle Le Chatelier, Lisa Derosa, Connie P M Duong, Maryam Tidjani Alou, Romain Daillère, Aurélie Fluckiger, Meriem Messaoudene, Conrad Rauber, Maria P Roberti,[...]. Science 2018
20

From Erythromycin to Azithromycin and New Potential Ribosome-Binding Antimicrobials.
Dubravko Jelić, Roberto Antolović. Antibiotics (Basel) 2016
59
20

A single early-in-life macrolide course has lasting effects on murine microbial network topology and immunity.
Victoria E Ruiz, Thomas Battaglia, Zachary D Kurtz, Luc Bijnens, Amy Ou, Isak Engstrand, Xuhui Zheng, Tadasu Iizumi, Briana J Mullins, Christian L Müller,[...]. Nat Commun 2017
50
20

Limits to robustness and reproducibility in the demarcation of operational taxonomic units.
Thomas S B Schmidt, João F Matias Rodrigues, Christian von Mering. Environ Microbiol 2015
51
20

Inhibition of renal NQO1 activity by dicoumarol suppresses nitroreduction of aristolochic acid I and attenuates its nephrotoxicity.
Min Chen, Likun Gong, Xinming Qi, Guozhen Xing, Yang Luan, Yuanfeng Wu, Ying Xiao, Jun Yao, Yan Li, Xiang Xue,[...]. Toxicol Sci 2011
42
20

Potential of fecal microbiota for early-stage detection of colorectal cancer.
Georg Zeller, Julien Tap, Anita Y Voigt, Shinichi Sunagawa, Jens Roat Kultima, Paul I Costea, Aurélien Amiot, Jürgen Böhm, Francesco Brunetti, Nina Habermann,[...]. Mol Syst Biol 2014
434
20


MOCAT2: a metagenomic assembly, annotation and profiling framework.
Jens Roat Kultima, Luis Pedro Coelho, Kristoffer Forslund, Jaime Huerta-Cepas, Simone S Li, Marja Driessen, Anita Yvonne Voigt, Georg Zeller, Shinichi Sunagawa, Peer Bork. Bioinformatics 2016
92
20

Mapping human microbiome drug metabolism by gut bacteria and their genes.
Michael Zimmermann, Maria Zimmermann-Kogadeeva, Rebekka Wegmann, Andrew L Goodman. Nature 2019
245
20

NIH Image to ImageJ: 25 years of image analysis.
Caroline A Schneider, Wayne S Rasband, Kevin W Eliceiri. Nat Methods 2012
20

Metagenomic analysis of faecal microbiome as a tool towards targeted non-invasive biomarkers for colorectal cancer.
Jun Yu, Qiang Feng, Sunny Hei Wong, Dongya Zhang, Qiao Yi Liang, Youwen Qin, Longqing Tang, Hui Zhao, Jan Stenvang, Yanli Li,[...]. Gut 2017
363
20

ETE 3: Reconstruction, Analysis, and Visualization of Phylogenomic Data.
Jaime Huerta-Cepas, François Serra, Peer Bork. Mol Biol Evol 2016
647
20

[Cellular receptors for animal viruses].
R Homma, K Yasui. Tanpakushitsu Kakusan Koso 1968
315
20


MAPseq: highly efficient k-mer search with confidence estimates, for rRNA sequence analysis.
João F Matias Rodrigues, Thomas S B Schmidt, Janko Tackmann, Christian von Mering. Bioinformatics 2017
37
20

Quantification of bias related to the extraction of DNA directly from soils.
A Frostegård, S Courtois, V Ramisse, S Clerc, D Bernillon, F Le Gall, P Jeannin, X Nesme, P Simonet. Appl Environ Microbiol 1999
240
20

HPC-CLUST: distributed hierarchical clustering for large sets of nucleotide sequences.
João F Matias Rodrigues, Christian von Mering. Bioinformatics 2014
23
20

Antibiotic efficacy is linked to bacterial cellular respiration.
Michael A Lobritz, Peter Belenky, Caroline B M Porter, Arnaud Gutierrez, Jason H Yang, Eric G Schwarz, Daniel J Dwyer, Ahmad S Khalil, James J Collins. Proc Natl Acad Sci U S A 2015
285
20


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.