A citation-based method for searching scientific literature

Fei Li, Pascal F Egea, Alex J Vecchio, Ignacio Asial, Meghna Gupta, Joana Paulino, Ruchika Bajaj, Miles Sasha Dickinson, Shelagh Ferguson-Miller, Brian C Monk, Robert M Stroud. J Biol Chem 2021
Times Cited: 7







List of co-cited articles
7 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity



Improved protein structure prediction using potentials from deep learning.
Andrew W Senior, Richard Evans, John Jumper, James Kirkpatrick, Laurent Sifre, Tim Green, Chongli Qin, Augustin Žídek, Alexander W R Nelson, Alex Bridgland,[...]. Nature 2020
524
28

Overcoming the challenges of membrane protein crystallography.
Elisabeth P Carpenter, Konstantinos Beis, Alexander D Cameron, So Iwata. Curr Opin Struct Biol 2008
227
28

X-ray structure of a voltage-dependent K+ channel.
Youxing Jiang, Alice Lee, Jiayun Chen, Vanessa Ruta, Martine Cadene, Brian T Chait, Roderick MacKinnon. Nature 2003
28

The MARTINI force field: coarse grained model for biomolecular simulations.
Siewert J Marrink, H Jelger Risselada, Serge Yefimov, D Peter Tieleman, Alex H de Vries. J Phys Chem B 2007
28

OPM database and PPM web server: resources for positioning of proteins in membranes.
Mikhail A Lomize, Irina D Pogozheva, Hyeon Joo, Henry I Mosberg, Andrei L Lomize. Nucleic Acids Res 2012
764
28

Highly accurate protein structure prediction with AlphaFold.
John Jumper, Richard Evans, Alexander Pritzel, Tim Green, Michael Figurnov, Olaf Ronneberger, Kathryn Tunyasuvunakool, Russ Bates, Augustin Žídek, Anna Potapenko,[...]. Nature 2021
400
28

Icosahedral virus structures and the protein data bank.
John E Johnson, Arthur J Olson. J Biol Chem 2021
4
25

Integrating 3D structural information into systems biology.
Diana Murray, Donald Petrey, Barry Honig. J Biol Chem 2021
2
50



Confessions of an icosahedral virus crystallographer.
John E Johnson. Microscopy (Oxf) 2013
8
14

Evolution of standardization and dissemination of cryo-EM structures and data jointly by the community, PDB, and EMDB.
Wah Chiu, Michael F Schmid, Grigore D Pintilie, Catherine L Lawson. J Biol Chem 2021
2
50

An RNA-centric historical narrative around the Protein Data Bank.
Eric Westhof, Neocles B Leontis. J Biol Chem 2021
1
100

Announcing the worldwide Protein Data Bank.
Helen Berman, Kim Henrick, Haruki Nakamura. Nat Struct Biol 2003
14


The PDB and the ribosome.
Peter B Moore. J Biol Chem 2021
1
100


Sensory Repertoire of Bacterial Chemoreceptors.
Álvaro Ortega, Igor B Zhulin, Tino Krell. Microbiol Mol Biol Rev 2017
79
14


Coiled-coil helix rotation selects repressing or activating state of transcriptional regulator DhaR.
Rong Shi, Laura McDonald, Miroslaw Cygler, Irena Ekiel. Structure 2014
13
14

GenBank.
Eric W Sayers, Mark Cavanaugh, Karen Clark, Kim D Pruitt, Conrad L Schoch, Stephen T Sherry, Ilene Karsch-Mizrachi. Nucleic Acids Res 2021
29
14

In Situ Conformational Changes of the Escherichia coli Serine Chemoreceptor in Different Signaling States.
Wen Yang, C Keith Cassidy, Peter Ames, Christoph A Diebolder, Klaus Schulten, Zaida Luthey-Schulten, John S Parkinson, Ariane Briegel. mBio 2019
15
14

Bacterial sensor kinases using Fe-S cluster binding PAS or GAF domains for O2 sensing.
Gottfried Unden, Stephanie Nilkens, Mareike Singenstreu. Dalton Trans 2013
16
14


Motifs of serine and threonine can drive association of transmembrane helices.
Jessica P Dawson, Joshua S Weinger, Donald M Engelman. J Mol Biol 2002
208
14


A coiled coil switch mediates cold sensing by the thermosensory protein DesK.
Emilio Saita, Luciano A Abriata, Yi Ting Tsai, Felipe Trajtenberg, Thomas Lemmin, Alejandro Buschiazzo, Matteo Dal Peraro, Diego de Mendoza, Daniela Albanesi. Mol Microbiol 2015
34
14


The Molecular Mechanism of Nitrate Chemotaxis via Direct Ligand Binding to the PilJ Domain of McpN.
David Martín-Mora, Álvaro Ortega, Miguel A Matilla, Sergio Martínez-Rodríguez, José A Gavira, Tino Krell. mBio 2019
17
14


Host-derived nitrate boosts growth of E. coli in the inflamed gut.
Sebastian E Winter, Maria G Winter, Mariana N Xavier, Parameth Thiennimitr, Victor Poon, A Marijke Keestra, Richard C Laughlin, Gabriel Gomez, Jing Wu, Sara D Lawhon,[...]. Science 2013
483
14

Instability in a coiled-coil signaling helix is conserved for signal transduction in soluble guanylyl cyclase.
Andrzej Weichsel, Jessica A Kievenaar, Roslyn Curry, Jacob T Croft, William R Montfort. Protein Sci 2019
8
14

Engineered bacteria to report gut function: technologies and implementation.
Tanmay Tanna, Raghavendra Ramachanderan, Randall J Platt. Curr Opin Microbiol 2021
4
25

Full-length structure of a monomeric histidine kinase reveals basis for sensory regulation.
Giomar Rivera-Cancel, Wen-huang Ko, Diana R Tomchick, Fernando Correa, Kevin H Gardner. Proc Natl Acad Sci U S A 2014
54
14

Helix bundle loops determine whether histidine kinases autophosphorylate in cis or in trans.
Orr Ashenberg, Amy E Keating, Michael T Laub. J Mol Biol 2013
46
14

Biochemical and structural analysis of the molybdenum cofactor biosynthesis protein MobA.
Annika Guse, Clare E M Stevenson, Jochen Kuper, Grant Buchanan, Gunter Schwarz, Gerard Giordano, Axel Magalon, Ralf R Mendel, David M Lawson, Tracy Palmer. J Biol Chem 2003
19
14

Microbial nitrate respiration--genes, enzymes and environmental distribution.
Beate Kraft, Marc Strous, Halina E Tegetmeyer. J Biotechnol 2011
173
14

Mechanism of transmembrane signaling by sensor histidine kinases.
Ivan Gushchin, Igor Melnikov, Vitaly Polovinkin, Andrii Ishchenko, Anastasia Yuzhakova, Pavel Buslaev, Gleb Bourenkov, Sergei Grudinin, Ekaterina Round, Taras Balandin,[...]. Science 2017
74
14

Segmental helical motions and dynamical asymmetry modulate histidine kinase autophosphorylation.
Ariel E Mechaly, Nathalie Sassoon, Jean-Michel Betton, Pedro M Alzari. PLoS Biol 2014
74
14


Identification of transcription activators that regulate gonococcal adaptation from aerobic to anaerobic or oxygen-limited growth.
S Lissenden, S Mohan, T Overton, T Regan, H Crooke, J A Cardinale, T C Householder, P Adams, C D O'Conner, V L Clark,[...]. Mol Microbiol 2000
56
14


Cache Domains That are Homologous to, but Different from PAS Domains Comprise the Largest Superfamily of Extracellular Sensors in Prokaryotes.
Amit A Upadhyay, Aaron D Fleetwood, Ogun Adebali, Robert D Finn, Igor B Zhulin. PLoS Comput Biol 2016
76
14


Mechanistic insights revealed by the crystal structure of a histidine kinase with signal transducer and sensor domains.
Chen Wang, Jiayan Sang, Jiawei Wang, Mingyan Su, Jennifer S Downey, Qinggan Wu, Shida Wang, Yongfei Cai, Xiaozheng Xu, Jun Wu,[...]. PLoS Biol 2013
108
14

The InterPro protein families and domains database: 20 years on.
Matthias Blum, Hsin-Yu Chang, Sara Chuguransky, Tiago Grego, Swaathi Kandasaamy, Alex Mitchell, Gift Nuka, Typhaine Paysan-Lafosse, Matloob Qureshi, Shriya Raj,[...]. Nucleic Acids Res 2021
140
14


Redox-Based Transcriptional Regulation in Prokaryotes: Revisiting Model Mechanisms.
Emma Sevilla, María Teresa Bes, Andrés González, María Luisa Peleato, María F Fillat. Antioxid Redox Signal 2019
8
14



Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.