A citation-based method for searching scientific literature

Yan Cheng, Xiaoxue He, S V G N Priyadarshani, Yu Wang, Li Ye, Chao Shi, Kangzhuo Ye, Qiao Zhou, Ziqiang Luo, Fang Deng, Ling Cao, Ping Zheng, Mohammad Aslam, Yuan Qin. BMC Genomics 2021
Times Cited: 11







List of co-cited articles
100 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


The alternative reality of plant mitochondrial DNA: One ring does not rule them all.
Alexander Kozik, Beth A Rowan, Dean Lavelle, Lidija Berke, M Eric Schranz, Richard W Michelmore, Alan C Christensen. PLoS Genet 2019
72
72

Rapid evolution of enormous, multichromosomal genomes in flowering plant mitochondria with exceptionally high mutation rates.
Daniel B Sloan, Andrew J Alverson, John P Chuckalovcak, Martin Wu, David E McCauley, Jeffrey D Palmer, Douglas R Taylor. PLoS Biol 2012
290
63

GeSeq - versatile and accurate annotation of organelle genomes.
Michael Tillich, Pascal Lehwark, Tommaso Pellizzer, Elena S Ulbricht-Jones, Axel Fischer, Ralph Bock, Stephan Greiner. Nucleic Acids Res 2017
989
63

MISA-web: a web server for microsatellite prediction.
Sebastian Beier, Thomas Thiel, Thomas Münch, Uwe Scholz, Martin Mascher. Bioinformatics 2017
458
54

Assembly and comparative analysis of complete mitochondrial genome sequence of an economic plant Salix suchowensis.
Ning Ye, Xuelin Wang, Juan Li, Changwei Bi, Yiqing Xu, Dongyang Wu, Qiaolin Ye. PeerJ 2017
23
54

Miniaturized mitogenome of the parasitic plant Viscum scurruloideum is extremely divergent and dynamic and has lost all nad genes.
Elizabeth Skippington, Todd J Barkman, Danny W Rice, Jeffrey D Palmer. Proc Natl Acad Sci U S A 2015
122
54

REPuter: the manifold applications of repeat analysis on a genomic scale.
S Kurtz, J V Choudhuri, E Ohlebusch, C Schleiermacher, J Stoye, R Giegerich. Nucleic Acids Res 2001
893
45


Insights into the evolution of mitochondrial genome size from complete sequences of Citrullus lanatus and Cucurbita pepo (Cucurbitaceae).
Andrew J Alverson, XiaoXin Wei, Danny W Rice, David B Stern, Kerrie Barry, Jeffrey D Palmer. Mol Biol Evol 2010
235
45

PhyloSuite: An integrated and scalable desktop platform for streamlined molecular sequence data management and evolutionary phylogenetics studies.
Dong Zhang, Fangluan Gao, Ivan Jakovlić, Hong Zou, Jin Zhang, Wen X Li, Gui T Wang. Mol Ecol Resour 2020
558
45

Analysis of the Complete Mitochondrial Genome Sequence of the Diploid Cotton Gossypium raimondii by Comparative Genomics Approaches.
Changwei Bi, Andrew H Paterson, Xuelin Wang, Yiqing Xu, Dongyang Wu, Yanshu Qu, Anna Jiang, Qiaolin Ye, Ning Ye. Biomed Res Int 2016
24
45

Evolution and Diversification of Kiwifruit Mitogenomes through Extensive Whole-Genome Rearrangement and Mosaic Loss of Intergenic Sequences in a Highly Variable Region.
Shuaibin Wang, Dawei Li, Xiaohong Yao, Qingwei Song, Zupeng Wang, Qiong Zhang, Caihong Zhong, Yifei Liu, Hongwen Huang. Genome Biol Evol 2019
14
45



The plant mitochondrial genome: dynamics and maintenance.
José M Gualberto, Daria Mileshina, Clémentine Wallet, Adnan Khan Niazi, Frédérique Weber-Lotfi, André Dietrich. Biochimie 2014
113
36

GetOrganelle: a fast and versatile toolkit for accurate de novo assembly of organelle genomes.
Jian-Jun Jin, Wen-Bin Yu, Jun-Bo Yang, Yu Song, Claude W dePamphilis, Ting-Shuang Yi, De-Zhu Li. Genome Biol 2020
554
36

The complete mitochondrial genome of the early flowering plant Nymphaea colorata is highly repetitive with low recombination.
Shanshan Dong, Chaoxian Zhao, Fei Chen, Yanhui Liu, Shouzhou Zhang, Hong Wu, Liangsheng Zhang, Yang Liu. BMC Genomics 2018
39
36


Origins and recombination of the bacterial-sized multichromosomal mitochondrial genome of cucumber.
Andrew J Alverson, Danny W Rice, Stephanie Dickinson, Kerrie Barry, Jeffrey D Palmer. Plant Cell 2011
147
36

Canu: scalable and accurate long-read assembly via adaptive k-mer weighting and repeat separation.
Sergey Koren, Brian P Walenz, Konstantin Berlin, Jason R Miller, Nicholas H Bergman, Adam M Phillippy. Genome Res 2017
36








High speed BLASTN: an accelerated MegaBLAST search tool.
Ying Chen, Weicai Ye, Yongdong Zhang, Yuesheng Xu. Nucleic Acids Res 2015
121
27


Pilon: an integrated tool for comprehensive microbial variant detection and genome assembly improvement.
Bruce J Walker, Thomas Abeel, Terrance Shea, Margaret Priest, Amr Abouelliel, Sharadha Sakthikumar, Christina A Cuomo, Qiandong Zeng, Jennifer Wortman, Sarah K Young,[...]. PLoS One 2014
27

Mitochondrial DNA mutation associated with Leber's hereditary optic neuropathy.
D C Wallace, G Singh, M T Lott, J A Hodge, T G Schurr, A M Lezza, L J Elsas, E K Nikoskelainen. Science 1988
27

Complete Mitochondrial Genome of a Gymnosperm, Sitka Spruce (Picea sitchensis), Indicates a Complex Physical Structure.
Shaun D Jackman, Lauren Coombe, René L Warren, Heather Kirk, Eva Trinh, Tina MacLeod, Stephen Pleasance, Pawan Pandoh, Yongjun Zhao, Robin J Coope,[...]. Genome Biol Evol 2020
14
27

TBtools: An Integrative Toolkit Developed for Interactive Analyses of Big Biological Data.
Chengjie Chen, Hao Chen, Yi Zhang, Hannah R Thomas, Margaret H Frank, Yehua He, Rui Xia. Mol Plant 2020
27

Ginkgo and Welwitschia Mitogenomes Reveal Extreme Contrasts in Gymnosperm Mitochondrial Evolution.
Wenhu Guo, Felix Grewe, Weishu Fan, Gregory J Young, Volker Knoop, Jeffrey D Palmer, Jeffrey P Mower. Mol Biol Evol 2016
76
27



Horizontal transfer of entire genomes via mitochondrial fusion in the angiosperm Amborella.
Danny W Rice, Andrew J Alverson, Aaron O Richardson, Gregory J Young, M Virginia Sanchez-Puerta, Jérôme Munzinger, Kerrie Barry, Jeffrey L Boore, Yan Zhang, Claude W dePamphilis,[...]. Science 2013
178
27


Widespread horizontal transfer of mitochondrial genes in flowering plants.
Ulfar Bergthorsson, Keith L Adams, Brendan Thomason, Jeffrey D Palmer. Nature 2003
243
27

The complete sequence of the rice (Oryza sativa L.) mitochondrial genome: frequent DNA sequence acquisition and loss during the evolution of flowering plants.
Y Notsu, S Masood, T Nishikawa, N Kubo, G Akiduki, M Nakazono, A Hirai, K Kadowaki. Mol Genet Genomics 2002
307
27


Endosymbiotic gene transfer: organelle genomes forge eukaryotic chromosomes.
Jeremy N Timmis, Michael A Ayliffe, Chun Y Huang, William Martin. Nat Rev Genet 2004
839
27

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets.
Sudhir Kumar, Glen Stecher, Koichiro Tamura. Mol Biol Evol 2016
27



Structural dynamics of cereal mitochondrial genomes as revealed by complete nucleotide sequencing of the wheat mitochondrial genome.
Yasunari Ogihara, Yukiko Yamazaki, Koji Murai, Akira Kanno, Toru Terachi, Takashi Shiina, Naohiko Miyashita, Shuhei Nasuda, Chiharu Nakamura, Naoki Mori,[...]. Nucleic Acids Res 2005
126
27


Apollo: a sequence annotation editor.
S E Lewis, S M J Searle, N Harris, M Gibson, V Lyer, J Richter, C Wiel, L Bayraktaroglu, E Birney, M A Crosby,[...]. Genome Biol 2002
269
27

MRBAYES: Bayesian inference of phylogenetic trees.
J P Huelsenbeck, F Ronquist. Bioinformatics 2001
27

CPGAVAS2, an integrated plastome sequence annotator and analyzer.
Linchun Shi, Haimei Chen, Mei Jiang, Liqiang Wang, Xi Wu, Linfang Huang, Chang Liu. Nucleic Acids Res 2019
277
27


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.