A citation-based method for searching scientific literature

Xin Zhang, Sihan Lv, Zhenhuan Luo, Yongfei Hu, Xin Peng, Jie Lv, Shanshan Zhao, Jianqi Feng, Guanjie Huang, Qin-Li Wan, Jun Liu, Hongxin Huang, Bing Luan, Dong Wang, Xiaoyang Zhao, Ying Lin, Qinghua Zhou, Zhen-Ning Zhang, Zhili Rong. Nucleic Acids Res 2021
Times Cited: 8







List of co-cited articles
41 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


In vivo genome editing using Staphylococcus aureus Cas9.
F Ann Ran, Le Cong, Winston X Yan, David A Scott, Jonathan S Gootenberg, Andrea J Kriz, Bernd Zetsche, Ophir Shalem, Xuebing Wu, Kira S Makarova,[...]. Nature 2015
50

Rationally engineered Cas9 nucleases with improved specificity.
Ian M Slaymaker, Linyi Gao, Bernd Zetsche, David A Scott, Winston X Yan, Feng Zhang. Science 2016
37

Engineered CRISPR-Cas12a variants with increased activities and improved targeting ranges for gene, epigenetic and base editing.
Benjamin P Kleinstiver, Alexander A Sousa, Russell T Walton, Y Esther Tak, Jonathan Y Hsu, Kendell Clement, Moira M Welch, Joy E Horng, Jose Malagon-Lopez, Irene Scarfò,[...]. Nat Biotechnol 2019
215
37

Genome-scale transcriptional activation by an engineered CRISPR-Cas9 complex.
Silvana Konermann, Mark D Brigham, Alexandro E Trevino, Julia Joung, Omar O Abudayyeh, Clea Barcena, Patrick D Hsu, Naomi Habib, Jonathan S Gootenberg, Hiroshi Nishimasu,[...]. Nature 2015
37

CRISPR-CasΦ from huge phages is a hypercompact genome editor.
Patrick Pausch, Basem Al-Shayeb, Ezra Bisom-Rapp, Connor A Tsuchida, Zheng Li, Brady F Cress, Gavin J Knott, Steven E Jacobsen, Jillian F Banfield, Jennifer A Doudna. Science 2020
144
37

Cpf1 is a single RNA-guided endonuclease of a class 2 CRISPR-Cas system.
Bernd Zetsche, Jonathan S Gootenberg, Omar O Abudayyeh, Ian M Slaymaker, Kira S Makarova, Patrick Essletzbichler, Sara E Volz, Julia Joung, John van der Oost, Aviv Regev,[...]. Cell 2015
37

Crystal Structure of Cpf1 in Complex with Guide RNA and Target DNA.
Takashi Yamano, Hiroshi Nishimasu, Bernd Zetsche, Hisato Hirano, Ian M Slaymaker, Yinqing Li, Iana Fedorova, Takanori Nakane, Kira S Makarova, Eugene V Koonin,[...]. Cell 2016
315
37

The CRISPR-associated DNA-cleaving enzyme Cpf1 also processes precursor CRISPR RNA.
Ines Fonfara, Hagen Richter, Majda Bratovič, Anaïs Le Rhun, Emmanuelle Charpentier. Nature 2016
417
37

Highly efficient Cas9-mediated transcriptional programming.
Alejandro Chavez, Jonathan Scheiman, Suhani Vora, Benjamin W Pruitt, Marcelle Tuttle, Eswar P R Iyer, Shuailiang Lin, Samira Kiani, Christopher D Guzman, Daniel J Wiegand,[...]. Nat Methods 2015
771
37

Improvement of the CRISPR-Cpf1 system with ribozyme-processed crRNA.
Zongliang Gao, Elena Herrera-Carrillo, Ben Berkhout. RNA Biol 2018
21
25

Genetic editing and interrogation with Cpf1 and caged truncated pre-tRNA-like crRNA in mammalian cells.
Xuhua Zhang, Linping Xu, Ruihua Fan, Quanli Gao, Yunfeng Song, Xiaodong Lyu, Jiangtao Ren, Yongping Song. Cell Discov 2018
6
33


A 'new lease of life': FnCpf1 possesses DNA cleavage activity for genome editing in human cells.
Mengjun Tu, Li Lin, Yilu Cheng, Xiubin He, Huihui Sun, Haihua Xie, Junhao Fu, Changbao Liu, Jin Li, Ding Chen,[...]. Nucleic Acids Res 2017
73
25

Evolved Cas9 variants with broad PAM compatibility and high DNA specificity.
Johnny H Hu, Shannon M Miller, Maarten H Geurts, Weixin Tang, Liwei Chen, Ning Sun, Christina M Zeina, Xue Gao, Holly A Rees, Zhi Lin,[...]. Nature 2018
719
25

Engineered Cpf1 variants with altered PAM specificities.
Linyi Gao, David B T Cox, Winston X Yan, John C Manteiga, Martin W Schneider, Takashi Yamano, Hiroshi Nishimasu, Osamu Nureki, Nicola Crosetto, Feng Zhang. Nat Biotechnol 2017
207
25

Improving CRISPR-Cas nuclease specificity using truncated guide RNAs.
Yanfang Fu, Jeffry D Sander, Deepak Reyon, Vincent M Cascio, J Keith Joung. Nat Biotechnol 2014
25

Orthogonal gene knockout and activation with a catalytically active Cas9 nuclease.
James E Dahlman, Omar O Abudayyeh, Julia Joung, Jonathan S Gootenberg, Feng Zhang, Silvana Konermann. Nat Biotechnol 2015
163
25

Selective disruption of an oncogenic mutant allele by CRISPR/Cas9 induces efficient tumor regression.
Taeyoung Koo, A-Rum Yoon, Hee-Yeon Cho, Sangsu Bae, Chae-Ok Yun, Jin-Soo Kim. Nucleic Acids Res 2017
52
25

Highly efficient genome editing by CRISPR-Cpf1 using CRISPR RNA with a uridinylate-rich 3'-overhang.
Su Bin Moon, Jeong Mi Lee, Jeong Gu Kang, Nan-Ee Lee, Dae-In Ha, Do Yon Kim, Sun Hee Kim, Kwangsun Yoo, Daesik Kim, Jeong-Heon Ko,[...]. Nat Commun 2018
72
25

Programmable editing of a target base in genomic DNA without double-stranded DNA cleavage.
Alexis C Komor, Yongjoo B Kim, Michael S Packer, John A Zuris, David R Liu. Nature 2016
25

Extension of the crRNA enhances Cpf1 gene editing in vitro and in vivo.
Hyo Min Park, Hui Liu, Joann Wu, Anthony Chong, Vanessa Mackley, Christof Fellmann, Anirudh Rao, Fuguo Jiang, Hunghao Chu, Niren Murthy,[...]. Nat Commun 2018
49
25

CRISPR-Cas12a target binding unleashes indiscriminate single-stranded DNase activity.
Janice S Chen, Enbo Ma, Lucas B Harrington, Maria Da Costa, Xinran Tian, Joel M Palefsky, Jennifer A Doudna. Science 2018
950
25

An updated evolutionary classification of CRISPR-Cas systems.
Kira S Makarova, Yuri I Wolf, Omer S Alkhnbashi, Fabrizio Costa, Shiraz A Shah, Sita J Saunders, Rodolphe Barrangou, Stan J J Brouns, Emmanuelle Charpentier, Daniel H Haft,[...]. Nat Rev Microbiol 2015
25

Multiplex gene editing by CRISPR-Cpf1 using a single crRNA array.
Bernd Zetsche, Matthias Heidenreich, Prarthana Mohanraju, Iana Fedorova, Jeroen Kneppers, Ellen M DeGennaro, Nerges Winblad, Sourav R Choudhury, Omar O Abudayyeh, Jonathan S Gootenberg,[...]. Nat Biotechnol 2017
434
25

Development and applications of CRISPR-Cas9 for genome engineering.
Patrick D Hsu, Eric S Lander, Feng Zhang. Cell 2014
25

Targeted Delivery of CRISPR/Cas9-Mediated Cancer Gene Therapy via Liposome-Templated Hydrogel Nanoparticles.
Zeming Chen, Fuyao Liu, Yanke Chen, Jun Liu, Xiaoying Wang, Ann T Chen, Gang Deng, Hongyi Zhang, Jie Liu, Zhangyong Hong,[...]. Adv Funct Mater 2017
107
25

Multiplexed orthogonal genome editing and transcriptional activation by Cas12a.
Marco Breinig, Anabel Y Schweitzer, Anna M Herianto, Steffie Revia, Lisa Schaefer, Lena Wendler, Ana Cobos Galvez, Darjus F Tschaharganeh. Nat Methods 2019
26
25

Crystal structure of Cas9 in complex with guide RNA and target DNA.
Hiroshi Nishimasu, F Ann Ran, Patrick D Hsu, Silvana Konermann, Soraya I Shehata, Naoshi Dohmae, Ryuichiro Ishitani, Feng Zhang, Osamu Nureki. Cell 2014
952
25

Multiplexed genome engineering by Cas12a and CRISPR arrays encoded on single transcripts.
Carlo C Campa, Niels R Weisbach, António J Santinha, Danny Incarnato, Randall J Platt. Nat Methods 2019
84
25

CRISPR-Cas9 knockin mice for genome editing and cancer modeling.
Randall J Platt, Sidi Chen, Yang Zhou, Michael J Yim, Lukasz Swiech, Hannah R Kempton, James E Dahlman, Oren Parnas, Thomas M Eisenhaure, Marko Jovanovic,[...]. Cell 2014
990
25

Programmable base editing of A•T to G•C in genomic DNA without DNA cleavage.
Nicole M Gaudelli, Alexis C Komor, Holly A Rees, Michael S Packer, Ahmed H Badran, David I Bryson, David R Liu. Nature 2017
25

Genome-wide specificity of dCpf1 cytidine base editors.
Daesik Kim, Kayeong Lim, Da-Eun Kim, Jin-Soo Kim. Nat Commun 2020
8
25

Engineered FnCas12a with enhanced activity through directional evolution in human cells.
Xiexie Liu, Xiaoyu Liu, Chenchen Zhou, Jineng Lv, Xiubin He, Yuanyuan Liu, Haihua Xie, Bang Wang, Xiujuan Lv, Lianchao Tang,[...]. J Biol Chem 2021
6
33

High-performance CRISPR-Cas12a genome editing for combinatorial genetic screening.
Rodrigo A Gier, Krista A Budinich, Niklaus H Evitt, Zhendong Cao, Elizabeth S Freilich, Qingzhou Chen, Jun Qi, Yemin Lan, Rahul M Kohli, Junwei Shi. Nat Commun 2020
27
25

Writing of H3K4Me3 overcomes epigenetic silencing in a sustained but context-dependent manner.
David Cano-Rodriguez, Rutger A F Gjaltema, Laura J Jilderda, Pytrick Jellema, Jelleke Dokter-Fokkens, Marcel H J Ruiters, Marianne G Rots. Nat Commun 2016
133
25

High-fidelity CRISPR-Cas9 nucleases with no detectable genome-wide off-target effects.
Benjamin P Kleinstiver, Vikram Pattanayak, Michelle S Prew, Shengdar Q Tsai, Nhu T Nguyen, Zongli Zheng, J Keith Joung. Nature 2016
25

Optimization of AsCas12a for combinatorial genetic screens in human cells.
Peter C DeWeirdt, Kendall R Sanson, Annabel K Sangree, Mudra Hegde, Ruth E Hanna, Marissa N Feeley, Audrey L Griffith, Teng Teng, Samantha M Borys, Christine Strand,[...]. Nat Biotechnol 2021
35
25

Epigenome editing by a CRISPR-Cas9-based acetyltransferase activates genes from promoters and enhancers.
Isaac B Hilton, Anthony M D'Ippolito, Christopher M Vockley, Pratiksha I Thakore, Gregory E Crawford, Timothy E Reddy, Charles A Gersbach. Nat Biotechnol 2015
978
25

Genome-Scale CRISPR-Mediated Control of Gene Repression and Activation.
Luke A Gilbert, Max A Horlbeck, Britt Adamson, Jacqueline E Villalta, Yuwen Chen, Evan H Whitehead, Carla Guimaraes, Barbara Panning, Hidde L Ploegh, Michael C Bassik,[...]. Cell 2014
25

Genome-wide specificities of CRISPR-Cas Cpf1 nucleases in human cells.
Benjamin P Kleinstiver, Shengdar Q Tsai, Michelle S Prew, Nhu T Nguyen, Moira M Welch, Jose M Lopez, Zachary R McCaw, Martin J Aryee, J Keith Joung. Nat Biotechnol 2016
346
25

Programmed genome editing by a miniature CRISPR-Cas12f nuclease.
Zhaowei Wu, Yifei Zhang, Haopeng Yu, Deng Pan, Yujue Wang, Yannan Wang, Fan Li, Chang Liu, Hao Nan, Weizhong Chen,[...]. Nat Chem Biol 2021
27
25

iKA-CRISPR hESCs for inducible and multiplex orthogonal gene knockout and activation.
Shufeng Ma, Jie Lv, Jing Sun, Pei Tang, Huibin Li, Hongwei Zhou, Zhenhai Zhang, Ying Lin, Zhili Rong. FEBS Lett 2018
4
25

A Designer AAV Variant Permits Efficient Retrograde Access to Projection Neurons.
D Gowanlock R Tervo, Bum-Yeol Hwang, Sarada Viswanathan, Thomas Gaj, Maria Lavzin, Kimberly D Ritola, Sarah Lindo, Susan Michael, Elena Kuleshova, David Ojala,[...]. Neuron 2016
538
12

Double nicking by RNA-guided CRISPR Cas9 for enhanced genome editing specificity.
F Ann Ran, Patrick D Hsu, Chie-Yu Lin, Jonathan S Gootenberg, Silvana Konermann, Alexandro E Trevino, David A Scott, Azusa Inoue, Shogo Matoba, Yi Zhang,[...]. Cell 2013
12

CRISPR-Edited Stem Cells in a Patient with HIV and Acute Lymphocytic Leukemia.
Lei Xu, Jun Wang, Yulin Liu, Liangfu Xie, Bin Su, Danlei Mou, Longteng Wang, Tingting Liu, Xiaobao Wang, Bin Zhang,[...]. N Engl J Med 2019
195
12

CRISPR/Cas9 β-globin gene targeting in human haematopoietic stem cells.
Daniel P Dever, Rasmus O Bak, Andreas Reinisch, Joab Camarena, Gabriel Washington, Carmencita E Nicolas, Mara Pavel-Dinu, Nivi Saxena, Alec B Wilkens, Sruthi Mantri,[...]. Nature 2016
460
12


Genome engineering using the CRISPR-Cas9 system.
F Ann Ran, Patrick D Hsu, Jason Wright, Vineeta Agarwala, David A Scott, Feng Zhang. Nat Protoc 2013
12

CRISPR-Cas9 In Vivo Gene Editing for Transthyretin Amyloidosis.
Julian D Gillmore, Ed Gane, Jorg Taubel, Justin Kao, Marianna Fontana, Michael L Maitland, Jessica Seitzer, Daniel O'Connell, Kathryn R Walsh, Kristy Wood,[...]. N Engl J Med 2021
204
12

GENETIC TECHNOLOGY REGULATION. Editing policy to fit the genome?
R Isasi, E Kleiderman, B M Knoppers. Science 2016
52
12


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.