A citation-based method for searching scientific literature

Nina Vasiljevic, Marisa Lim, Emily Humble, Adeline Seah, Adelgunde Kratzer, Nadja V Morf, Stefan Prost, Rob Ogden. Forensic Sci Int Genet 2021
Times Cited: 2







List of co-cited articles
4 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Rapid, large-scale species discovery in hyperdiverse taxa using 1D MinION sequencing.
Amrita Srivathsan, Emily Hartop, Jayanthi Puniamoorthy, Wan Ting Lee, Sujatha Narayanan Kutty, Olavi Kurina, Rudolf Meier. BMC Biol 2019
19
100

A Rapid and Accurate MinION-Based Workflow for Tracking Species Biodiversity in the Field.
Simone Maestri, Emanuela Cosentino, Marta Paterno, Hendrik Freitag, Jhoana M Garces, Luca Marcolungo, Massimiliano Alfano, Iva Njunjić, Menno Schilthuizen, Ferry Slik,[...]. Genes (Basel) 2019
18
100

Real-time DNA barcoding in a rainforest using nanopore sequencing: opportunities for rapid biodiversity assessments and local capacity building.
Aaron Pomerantz, Nicolás Peñafiel, Alejandro Arteaga, Lucas Bustamante, Frank Pichardo, Luis A Coloma, César L Barrio-Amorós, David Salazar-Valenzuela, Stefan Prost. Gigascience 2018
64
100


RNA virus interference via CRISPR/Cas13a system in plants.
Rashid Aman, Zahir Ali, Haroon Butt, Ahmed Mahas, Fatimah Aljedaani, Muhammad Zuhaib Khan, Shouwei Ding, Magdy Mahfouz. Genome Biol 2018
179
50

Analytical validity of nanopore sequencing for rapid SARS-CoV-2 genome analysis.
Rowena A Bull, Thiruni N Adikari, James M Ferguson, Jillian M Hammond, Igor Stevanovski, Alicia G Beukers, Zin Naing, Malinna Yeang, Andrey Verich, Hasindu Gamaarachchi,[...]. Nat Commun 2020
31
50

NGSpeciesID: DNA barcode and amplicon consensus generation from long-read sequencing data.
Kristoffer Sahlin, Marisa C W Lim, Stefan Prost. Ecol Evol 2021
3
50

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.
S F Altschul, T L Madden, A A Schäffer, J Zhang, Z Zhang, W Miller, D J Lipman. Nucleic Acids Res 1997
50

Nanopore Sequencing of a Forensic STR Multiplex Reveals Loci Suitable for Single-Contributor STR Profiling.
Olivier Tytgat, Yannick Gansemans, Jana Weymaere, Kaat Rubben, Dieter Deforce, Filip Van Nieuwerburgh. Genes (Basel) 2020
11
50

High-accuracy long-read amplicon sequences using unique molecular identifiers with Nanopore or PacBio sequencing.
Søren M Karst, Ryan M Ziels, Rasmus H Kirkegaard, Emil A Sørensen, Daniel McDonald, Qiyun Zhu, Rob Knight, Mads Albertsen. Nat Methods 2021
37
50

Introducing ribosomal tandem repeat barcoding for fungi.
Christian Wurzbacher, Ellen Larsson, Johan Bengtsson-Palme, Silke Van den Wyngaert, Sten Svantesson, Erik Kristiansson, Maiko Kagami, R Henrik Nilsson. Mol Ecol Resour 2019
34
50

Rapid, highly accurate and cost-effective open-source simultaneous complete HLA typing and phasing of class I and II alleles using nanopore sequencing.
Joanne D Stockton, Thomas Nieto, Elizabeth Wroe, Anthony Poles, Nicholas Inston, David Briggs, Andrew D Beggs. HLA 2020
9
50

Development and validation of a multi-locus DNA metabarcoding method to identify endangered species in complex samples.
Alfred J Arulandhu, Martijn Staats, Rico Hagelaar, Marleen M Voorhuijzen, Theo W Prins, Ingrid Scholtens, Adalberto Costessi, Danny Duijsings, François Rechenmann, Frédéric B Gaspar,[...]. Gigascience 2017
31
50

Validation of the barcoding gene COI for use in forensic genetic species identification.
Nick Dawnay, Rob Ogden, Ross McEwing, Gary R Carvalho, Roger S Thorpe. Forensic Sci Int 2007
125
50

Human short tandem repeat identification using a nanopore-based DNA sequencer: a pilot study.
Minoru Asogawa, Ayumu Ohno, So Nakagawa, Eriko Ochiai, Yasuhiro Katahira, Megumi Sudo, Motoki Osawa, Masatoshi Sugisawa, Tadashi Imanishi. J Hum Genet 2020
7
50

The occurrence of mtDNA heteroplasmy in multiple cetacean species.
Nicole L Vollmer, Amélia Viricel, Lynsey Wilcox, M Katherine Moore, Patricia E Rosel. Curr Genet 2011
17
50

From squiggle to basepair: computational approaches for improving nanopore sequencing read accuracy.
Franka J Rang, Wigard P Kloosterman, Jeroen de Ridder. Genome Biol 2018
183
50

Telomere-to-telomere assembly of a complete human X chromosome.
Karen H Miga, Sergey Koren, Arang Rhie, Mitchell R Vollger, Ariel Gershman, Andrey Bzikadze, Shelise Brooks, Edmund Howe, David Porubsky, Glennis A Logsdon,[...]. Nature 2020
166
50

Nanopore sequencing and assembly of a human genome with ultra-long reads.
Miten Jain, Sergey Koren, Karen H Miga, Josh Quick, Arthur C Rand, Thomas A Sasani, John R Tyson, Andrew D Beggs, Alexander T Dilthey, Ian T Fiddes,[...]. Nat Biotechnol 2018
657
50

Portable sequencing as a teaching tool in conservation and biodiversity research.
Mrinalini Watsa, Gideon A Erkenswick, Aaron Pomerantz, Stefan Prost. PLoS Biol 2020
7
50

A first look at the Oxford Nanopore MinION sequencer.
Alexander S Mikheyev, Mandy M Y Tin. Mol Ecol Resour 2014
173
50


NanoPack: visualizing and processing long-read sequencing data.
Wouter De Coster, Svenn D'Hert, Darrin T Schultz, Marc Cruts, Christine Van Broeckhoven. Bioinformatics 2018
435
50

Next-generation DNA sequencing.
Jay Shendure, Hanlee Ji. Nat Biotechnol 2008
50

Validation of cytochrome b sequence analysis as a method of species identification.
Wojciech Branicki, Tomasz Kupiec, Ryszard Pawlowski. J Forensic Sci 2003
56
50

Characterization of individual polynucleotide molecules using a membrane channel.
J J Kasianowicz, E Brandin, D Branton, D W Deamer. Proc Natl Acad Sci U S A 1996
50

Forensic SNP Genotyping using Nanopore MinION Sequencing.
Senne Cornelis, Yannick Gansemans, Lieselot Deleye, Dieter Deforce, Filip Van Nieuwerburgh. Sci Rep 2017
26
50

Nanopore sequencing of long ribosomal DNA amplicons enables portable and simple biodiversity assessments with high phylogenetic resolution across broad taxonomic scale.
Henrik Krehenwinkel, Aaron Pomerantz, James B Henderson, Susan R Kennedy, Jun Ying Lim, Varun Swamy, Juan Diego Shoobridge, Natalie Graham, Nipam H Patel, Rosemary G Gillespie,[...]. Gigascience 2019
37
50

On site DNA barcoding by nanopore sequencing.
Michele Menegon, Chiara Cantaloni, Ana Rodriguez-Prieto, Cesare Centomo, Ahmed Abdelfattah, Marzia Rossato, Massimo Bernardi, Luciano Xumerle, Simon Loader, Massimo Delledonne. PLoS One 2017
37
50

Fast and accurate de novo genome assembly from long uncorrected reads.
Robert Vaser, Ivan Sović, Niranjan Nagarajan, Mile Šikić. Genome Res 2017
614
50

Developmental validation of the MiSeq FGx Forensic Genomics System for Targeted Next Generation Sequencing in Forensic DNA Casework and Database Laboratories.
Anne C Jäger, Michelle L Alvarez, Carey P Davis, Ernesto Guzmán, Yonmee Han, Lisa Way, Paulina Walichiewicz, David Silva, Nguyen Pham, Glorianna Caves,[...]. Forensic Sci Int Genet 2017
117
50

MinION-Based DNA Barcoding of Preserved and Non-Invasively Collected Wildlife Samples.
Adeline Seah, Marisa C W Lim, Denise McAloose, Stefan Prost, Tracie A Seimon. Genes (Basel) 2020
9
50

An educational guide for nanopore sequencing in the classroom.
Alex N Salazar, Franklin L Nobrega, Christine Anyansi, Cristian Aparicio-Maldonado, Ana Rita Costa, Anna C Haagsma, Anwar Hiralal, Ahmed Mahfouz, Rebecca E McKenzie, Teunke van Rossum,[...]. PLoS Comput Biol 2020
7
50

A case of SARS-CoV-2 reinfection in Ecuador.
Belén Prado-Vivar, Mónica Becerra-Wong, Juan José Guadalupe, Sully Márquez, Bernardo Gutierrez, Patricio Rojas-Silva, Michelle Grunauer, Gabriel Trueba, Verónica Barragán, Paúl Cárdenas. Lancet Infect Dis 2021
40
50

Emergence of Monkeypox - West and Central Africa, 1970-2017.
Kara N Durski, Andrea M McCollum, Yoshinori Nakazawa, Brett W Petersen, Mary G Reynolds, Sylvie Briand, Mamoudou Harouna Djingarey, Victoria Olson, Inger K Damon, Asheena Khalakdina. MMWR Morb Mortal Wkly Rep 2018
57
50

DNA detective: a review of molecular approaches to wildlife forensics.
E A Alacs, A Georges, N N FitzSimmons, J Robertson. Forensic Sci Med Pathol 2010
70
50

Barcoding animal life: cytochrome c oxidase subunit 1 divergences among closely related species.
Paul D N Hebert, Sujeevan Ratnasingham, Jeremy R deWaard. Proc Biol Sci 2003
50

The Oxford Nanopore MinION: delivery of nanopore sequencing to the genomics community.
Miten Jain, Hugh E Olsen, Benedict Paten, Mark Akeson. Genome Biol 2016
426
50

Forensic applications of mitochondrial DNA.
J M Butler, B C Levin. Trends Biotechnol 1998
48
50

Matching STR and SNP genotyping to discriminate between wild boar, domestic pigs and their recent hybrids for forensic purposes.
Rita Lorenzini, Rita Fanelli, Francesco Tancredi, Antonino Siclari, Luisa Garofalo. Sci Rep 2020
7
50

A Novel Bat Coronavirus Closely Related to SARS-CoV-2 Contains Natural Insertions at the S1/S2 Cleavage Site of the Spike Protein.
Hong Zhou, Xing Chen, Tao Hu, Juan Li, Hao Song, Yanran Liu, Peihan Wang, Di Liu, Jing Yang, Edward C Holmes,[...]. Curr Biol 2020
243
50

Bat origin of human coronaviruses.
Ben Hu, Xingyi Ge, Lin-Fa Wang, Zhengli Shi. Virol J 2015
184
50

Taxonomy: use the red list as a registry.
Klaas-Douwe B Dijkstra. Nature 2017
4
50

Species identification through DNA "barcodes".
Gianmarco Ferri, Milena Alù, Beatrice Corradini, Manuela Licata, Giovanni Beduschi. Genet Test Mol Biomarkers 2009
35
50

Oxford Nanopore MinION Sequencing and Genome Assembly.
Hengyun Lu, Francesca Giordano, Zemin Ning. Genomics Proteomics Bioinformatics 2016
257
50

Relative Performance of MinION (Oxford Nanopore Technologies) versus Sequel (Pacific Biosciences) Third-Generation Sequencing Instruments in Identification of Agricultural and Forest Fungal Pathogens.
Kaire Loit, Kalev Adamson, Mohammad Bahram, Rasmus Puusepp, Sten Anslan, Riinu Kiiker, Rein Drenkhan, Leho Tedersoo. Appl Environ Microbiol 2019
20
50

Validation of NGS for mitochondrial DNA casework at the FBI Laboratory.
Michael D Brandhagen, Rebecca S Just, Jodi A Irwin. Forensic Sci Int Genet 2020
23
50

Reanalysis and revision of the Cambridge reference sequence for human mitochondrial DNA.
R M Andrews, I Kubacka, P F Chinnery, R N Lightowlers, D M Turnbull, N Howell. Nat Genet 1999
50

Molecular Identification of Shark Meat From Local Markets in Southern Brazil Based on DNA Barcoding: Evidence for Mislabeling and Trade of Endangered Species.
Fernanda Almerón-Souza, Christian Sperb, Carolina L Castilho, Pedro I C C Figueiredo, Leonardo T Gonçalves, Rodrigo Machado, Larissa R Oliveira, Victor H Valiati, Nelson J R Fagundes. Front Genet 2018
10
50

Forensic genetics and genomics: Much more than just a human affair.
Miguel Arenas, Filipe Pereira, Manuela Oliveira, Nadia Pinto, Alexandra M Lopes, Veronica Gomes, Angel Carracedo, Antonio Amorim. PLoS Genet 2017
20
50


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.