A citation-based method for searching scientific literature

Yikun Liu, Yeng Mun Liaw, Chee How Teo, Petr Cápal, Naoki Wada, Kiichi Fukui, Jaroslav Doležel, Nobuko Ohmido. Sci Rep 2021
Times Cited: 1







List of co-cited articles
articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


The molecular basis for centromere identity and function.
Kara L McKinley, Iain M Cheeseman. Nat Rev Mol Cell Biol 2016
253
100

Eukaryotic cytosine methyltransferases.
Mary Grace Goll, Timothy H Bestor. Annu Rev Biochem 2005
100


Epigenetic status of an adenovirus type 12 transgenome upon long-term cultivation in hamster cells.
Norbert Hochstein, Indrikis Muiznieks, Laurence Mangel, Holger Brondke, Walter Doerfler. J Virol 2007
18
100

Genome-wide methylation analysis identified sexually dimorphic methylated regions in hybrid tilapia.
Zi Yi Wan, Jun Hong Xia, Grace Lin, Le Wang, Valerie C L Lin, Gen Hua Yue. Sci Rep 2016
21
100



Widespread occurrence of power-law distributions in inter-repeat distances shaped by genome dynamics.
Alexandros Klimopoulos, Diamantis Sellis, Yannis Almirantis. Gene 2012
11
100

ReMap 2020: a database of regulatory regions from an integrative analysis of Human and Arabidopsis DNA-binding sequencing experiments.
Jeanne Chèneby, Zacharie Ménétrier, Martin Mestdagh, Thomas Rosnet, Allyssa Douida, Wassim Rhalloussi, Aurélie Bergon, Fabrice Lopez, Benoit Ballester. Nucleic Acids Res 2020
32
100

Amount and distribution of 5-methylcytosine in human DNA from different types of tissues of cells.
M Ehrlich, M A Gama-Sosa, L H Huang, R M Midgett, K C Kuo, R A McCune, C Gehrke. Nucleic Acids Res 1982
652
100

Carbonic anhydrase: new insights for an ancient enzyme.
B C Tripp, K Smith, J G Ferry. J Biol Chem 2001
305
100




Epigenetics and genome stability.
Justina X Feng, Nicole C Riddle. Mamm Genome 2020
9
100

A simple salting out procedure for extracting DNA from human nucleated cells.
S A Miller, D D Dykes, H F Polesky. Nucleic Acids Res 1988
100

Eukaryotic DNA methylation as an evolutionary device.
V Colot, J L Rossignol. Bioessays 1999
201
100

Protection of CpG islands from DNA methylation is DNA-encoded and evolutionarily conserved.
Hannah K Long, Hamish W King, Roger K Patient, Duncan T Odom, Robert J Klose. Nucleic Acids Res 2016
41
100

Qualimap 2: advanced multi-sample quality control for high-throughput sequencing data.
Konstantin Okonechnikov, Ana Conesa, Fernando García-Alcalde. Bioinformatics 2016
500
100


NPY genes play an essential role in root gravitropic responses in Arabidopsis.
Yuanting Li, Xinhua Dai, Youfa Cheng, Yunde Zhao. Mol Plant 2011
29
100

81
100

Conserved plant genes with similarity to mammalian de novo DNA methyltransferases.
X Cao, N M Springer, M G Muszynski, R L Phillips, S Kaeppler, S E Jacobsen. Proc Natl Acad Sci U S A 2000
153
100


DNA methylation reprogramming, TE derepression, and postzygotic isolation of nascent animal species.
M Laporte, J Le Luyer, C Rougeux, A-M Dion-Côté, M Krick, L Bernatchez. Sci Adv 2019
15
100

TET enzymes, TDG and the dynamics of DNA demethylation.
Rahul M Kohli, Yi Zhang. Nature 2013
849
100

RNA-directed DNA Methylation.
Robert M Erdmann, Colette L Picard. PLoS Genet 2020
26
100

Conservation and divergence of methylation patterning in plants and animals.
Suhua Feng, Shawn J Cokus, Xiaoyu Zhang, Pao-Yang Chen, Magnolia Bostick, Mary G Goll, Jonathan Hetzel, Jayati Jain, Steven H Strauss, Marnie E Halpern,[...]. Proc Natl Acad Sci U S A 2010
709
100

Stress induced gene expression drives transient DNA methylation changes at adjacent repetitive elements.
David Secco, Chuang Wang, Huixia Shou, Matthew D Schultz, Serge Chiarenza, Laurent Nussaume, Joseph R Ecker, James Whelan, Ryan Lister. Elife 2015
169
100

Epigenetic regulation in plant responses to the environment.
David C Baulcombe, Caroline Dean. Cold Spring Harb Perspect Biol 2014
98
100

DNA methylation in human diseases.
Zelin Jin, Yun Liu. Genes Dis 2018
94
100

deepTools: a flexible platform for exploring deep-sequencing data.
Fidel Ramírez, Friederike Dündar, Sarah Diehl, Björn A Grüning, Thomas Manke. Nucleic Acids Res 2014
961
100

Targeted DNA demethylation of the Arabidopsis genome using the human TET1 catalytic domain.
Javier Gallego-Bartolomé, Jason Gardiner, Wanlu Liu, Ashot Papikian, Basudev Ghoshal, Hsuan Yu Kuo, Jenny Miao-Chi Zhao, David J Segal, Steven E Jacobsen. Proc Natl Acad Sci U S A 2018
83
100


Centromere evolution and CpG methylation during vertebrate speciation.
Kazuki Ichikawa, Shingo Tomioka, Yuta Suzuki, Ryohei Nakamura, Koichiro Doi, Jun Yoshimura, Masahiko Kumagai, Yusuke Inoue, Yui Uchida, Naoki Irie,[...]. Nat Commun 2017
29
100

methylKit: a comprehensive R package for the analysis of genome-wide DNA methylation profiles.
Altuna Akalin, Matthias Kormaksson, Sheng Li, Francine E Garrett-Bakelman, Maria E Figueroa, Ari Melnick, Christopher E Mason. Genome Biol 2012
725
100

BEDTools: a flexible suite of utilities for comparing genomic features.
Aaron R Quinlan, Ira M Hall. Bioinformatics 2010
100

Genome-wide high-resolution mapping and functional analysis of DNA methylation in arabidopsis.
Xiaoyu Zhang, Junshi Yazaki, Ambika Sundaresan, Shawn Cokus, Simon W-L Chan, Huaming Chen, Ian R Henderson, Paul Shinn, Matteo Pellegrini, Steve E Jacobsen,[...]. Cell 2006
100

Non-CG Methylation in the Human Genome.
Yupeng He, Joseph R Ecker. Annu Rev Genomics Hum Genet 2015
111
100

DNA methylation in mammals.
En Li, Yi Zhang. Cold Spring Harb Perspect Biol 2014
386
100


48
100


Sambamba: fast processing of NGS alignment formats.
Artem Tarasov, Albert J Vilella, Edwin Cuppen, Isaac J Nijman, Pjotr Prins. Bioinformatics 2015
482
100

Establishment, maintenance, and biological roles of non-CG methylation in plants.
Sunil K Kenchanmane Raju, Eleanore Jeanne Ritter, Chad E Niederhuth. Essays Biochem 2019
11
100

Identification of genetic elements that autonomously determine DNA methylation states.
Florian Lienert, Christiane Wirbelauer, Indrani Som, Ann Dean, Fabio Mohn, Dirk Schübeler. Nat Genet 2011
270
100

Large domains of heterochromatin direct the formation of short mitotic chromosome loops.
Maximilian H Fitz-James, Pin Tong, Alison L Pidoux, Hakan Ozadam, Liyan Yang, Sharon A White, Job Dekker, Robin C Allshire. Elife 2020
6
100

BSMAP: whole genome bisulfite sequence MAPping program.
Yuanxin Xi, Wei Li. BMC Bioinformatics 2009
573
100


Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning.
Shawn J Cokus, Suhua Feng, Xiaoyu Zhang, Zugen Chen, Barry Merriman, Christian D Haudenschild, Sriharsa Pradhan, Stanley F Nelson, Matteo Pellegrini, Steven E Jacobsen. Nature 2008
100


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.