A citation-based method for searching scientific literature

Pingyu Liu, Fuming Li, Jianhuang Lin, Takeshi Fukumoto, Timothy Nacarelli, Xue Hao, Andrew V Kossenkov, M Celeste Simon, Rugang Zhang. Nat Cell Biol 2021
Times Cited: 1







List of co-cited articles
articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Dysregulations of Functional RNA Modifications in Cancer, Cancer Stemness and Cancer Therapeutics.
Mohammad Burhan Uddin, Zhishan Wang, Chengfeng Yang. Theranostics 2020
10
100

Naturally occurring modified ribonucleosides.
Phillip J McCown, Agnieszka Ruszkowska, Charlotte N Kunkler, Kurtis Breger, Jacob P Hulewicz, Matthew C Wang, Noah A Springer, Jessica A Brown. Wiley Interdiscip Rev RNA 2020
26
100

Human METTL16 is a N 6-methyladenosine (m6A) methyltransferase that targets pre-mRNAs and various non-coding RNAs.
Ahmed S Warda, Jens Kretschmer, Philipp Hackert, Christof Lenz, Henning Urlaub, Claudia Höbartner, Katherine E Sloan, Markus T Bohnsack. EMBO Rep 2017
194
100

A method for finding sites of selective adenosine deamination.
Johan Ohlson, Marie Ohman. Methods Enzymol 2007
7
100

Localization and abundance analysis of human lncRNAs at single-cell and single-molecule resolution.
Moran N Cabili, Margaret C Dunagin, Patrick D McClanahan, Andrew Biaesch, Olivia Padovan-Merhar, Aviv Regev, John L Rinn, Arjun Raj. Genome Biol 2015
317
100

Transcriptome-wide identification of adenosine-to-inosine editing using the ICE-seq method.
Tsutomu Suzuki, Hiroki Ueda, Shunpei Okada, Masayuki Sakurai. Nat Protoc 2015
34
100

N6 -methyladenosine modification of lncRNA Pvt1 governs epidermal stemness.
Jimmy Lee, Yuchen Wu, Bryan T Harada, Yuanyuan Li, Jing Zhao, Chuan He, Yanlei Ma, Xiaoyang Wu. EMBO J 2021
5
100

5' UTR m(6)A Promotes Cap-Independent Translation.
Kate D Meyer, Deepak P Patil, Jun Zhou, Alexandra Zinoviev, Maxim A Skabkin, Olivier Elemento, Tatyana V Pestova, Shu-Bing Qian, Samie R Jaffrey. Cell 2015
719
100


The emerging epitranscriptomics of long noncoding RNAs.
Andrew Shafik, Ulrike Schumann, Maurits Evers, Tennille Sibbritt, Thomas Preiss. Biochim Biophys Acta 2016
47
100

Structural Basis for Cooperative Function of Mettl3 and Mettl14 Methyltransferases.
Ping Wang, Katelyn A Doxtader, Yunsun Nam. Mol Cell 2016
334
100

Crystal structures of the human RNA demethylase Alkbh5 reveal basis for substrate recognition.
Chong Feng, Yang Liu, Guoqiang Wang, Zengqin Deng, Qi Zhang, Wei Wu, Yufeng Tong, Changmei Cheng, Zhongzhou Chen. J Biol Chem 2014
79
100

Zc3h13 Regulates Nuclear RNA m6A Methylation and Mouse Embryonic Stem Cell Self-Renewal.
Jing Wen, Ruitu Lv, Honghui Ma, Hongjie Shen, Chenxi He, Jiahua Wang, Fangfang Jiao, Hang Liu, Pengyuan Yang, Li Tan,[...]. Mol Cell 2018
236
100

N6-methyladenosine alters RNA structure to regulate binding of a low-complexity protein.
Nian Liu, Katherine I Zhou, Marc Parisien, Qing Dai, Luda Diatchenko, Tao Pan. Nucleic Acids Res 2017
241
100

Structural insights into the RNA methyltransferase domain of METTL16.
Agnieszka Ruszkowska, Milosz Ruszkowski, Zbigniew Dauter, Jessica A Brown. Sci Rep 2018
44
100

Posttranscriptional RNA Pseudouridylation.
Meemanage D De Zoysa, Yi-Tao Yu. Enzymes 2017
16
100

ADAR enzyme and miRNA story: a nucleotide that can make the difference.
Sara Tomaselli, Barbara Bonamassa, Anna Alisi, Valerio Nobili, Franco Locatelli, Angela Gallo. Int J Mol Sci 2013
30
100


Translation of non-standard codon nucleotides reveals minimal requirements for codon-anticodon interactions.
Thomas Philipp Hoernes, Klaus Faserl, Michael Andreas Juen, Johannes Kremser, Catherina Gasser, Elisabeth Fuchs, Xinying Shi, Aaron Siewert, Herbert Lindner, Christoph Kreutz,[...]. Nat Commun 2018
8
100

Probing N6-methyladenosine RNA modification status at single nucleotide resolution in mRNA and long noncoding RNA.
Nian Liu, Marc Parisien, Qing Dai, Guanqun Zheng, Chuan He, Tao Pan. RNA 2013
242
100

The obesity-associated FTO gene encodes a 2-oxoglutarate-dependent nucleic acid demethylase.
Thomas Gerken, Christophe A Girard, Yi-Chun Loraine Tung, Celia J Webby, Vladimir Saudek, Kirsty S Hewitson, Giles S H Yeo, Michael A McDonough, Sharon Cunliffe, Luke A McNeill,[...]. Science 2007
947
100

Challenges and Strategies in Ascribing Functions to Long Noncoding RNAs.
Yang Zhao, Hongqi Teng, Fan Yao, Shannon Yap, Yutong Sun, Li Ma. Cancers (Basel) 2020
9
100

Gene regulation by long non-coding RNAs and its biological functions.
Luisa Statello, Chun-Jie Guo, Ling-Ling Chen, Maite Huarte. Nat Rev Mol Cell Biol 2021
113
100

Two substrates are better than one: dual specificities for Dnmt2 methyltransferases.
Albert Jeltsch, Wolfgang Nellen, Frank Lyko. Trends Biochem Sci 2006
71
100

Editing and Chemical Modifications on Non-Coding RNAs in Cancer: A New Tale with Clinical Significance.
Ligia I Torsin, George E D Petrescu, Alexandru A Sabo, Baoqing Chen, Felix M Brehar, Mihnea P Dragomir, George A Calin. Int J Mol Sci 2021
3
100

Pseudouridine in a new era of RNA modifications.
Boxuan Simen Zhao, Chuan He. Cell Res 2015
30
100

The m6A reader YTHDF1 promotes ovarian cancer progression via augmenting EIF3C translation.
Tao Liu, Qinglv Wei, Jing Jin, Qingya Luo, Yi Liu, Yu Yang, Chunming Cheng, Lanfang Li, Jingnan Pi, Yanmin Si,[...]. Nucleic Acids Res 2020
84
100

Analysis of CLIP and iCLIP methods for nucleotide-resolution studies of protein-RNA interactions.
Yoichiro Sugimoto, Julian König, Shobbir Hussain, Blaž Zupan, Tomaž Curk, Michaela Frye, Jernej Ule. Genome Biol 2012
145
100

Topology of the human and mouse m6A RNA methylomes revealed by m6A-seq.
Dan Dominissini, Sharon Moshitch-Moshkovitz, Schraga Schwartz, Mali Salmon-Divon, Lior Ungar, Sivan Osenberg, Karen Cesarkas, Jasmine Jacob-Hirsch, Ninette Amariglio, Martin Kupiec,[...]. Nature 2012
100


YTH Domain: A Family of N6-methyladenosine (m6A) Readers.
Shanhui Liao, Hongbin Sun, Chao Xu. Genomics Proteomics Bioinformatics 2018
96
100


LncRNA-ANRIL promotes gastric cancer progression by enhancing NF-kB signaling.
Wei Deng, Yulong Zhang, Jun Cai, Jun Zhang, Xiaoye Liu, Jie Yin, Zhigang Bai, Hongwei Yao, Zhongtao Zhang. Exp Biol Med (Maywood) 2019
14
100

Epigenetics of Modified DNA Bases: 5-Methylcytosine and Beyond.
Suresh Kumar, Viswanathan Chinnusamy, Trilochan Mohapatra. Front Genet 2018
51
100

The pseudouridine residues of ribosomal RNA.
J Ofengand, A Bakin, J Wrzesinski, K Nurse, B G Lane. Biochem Cell Biol 1995
64
100

Quantitative Analysis of Adenosine-to-Inosine RNA Editing.
Turnee N Malik, Jean-Philippe Cartailler, Ronald B Emeson. Methods Mol Biol 2021
5
100

Direct RNA Sequencing for the Study of Synthesis, Processing, and Degradation of Modified Transcripts.
Mattia Furlan, Iris Tanaka, Tommaso Leonardi, Stefano de Pretis, Mattia Pelizzola. Front Genet 2020
5
100

Landscape of transcription in human cells.
Sarah Djebali, Carrie A Davis, Angelika Merkel, Alex Dobin, Timo Lassmann, Ali Mortazavi, Andrea Tanzer, Julien Lagarde, Wei Lin, Felix Schlesinger,[...]. Nature 2012
100


m(6)A RNA methylation promotes XIST-mediated transcriptional repression.
Deepak P Patil, Chun-Kan Chen, Brian F Pickering, Amy Chow, Constanza Jackson, Mitchell Guttman, Samie R Jaffrey. Nature 2016
554
100

Mapping pseudouridines in RNA molecules.
J Ofengand, M Del Campo, Y Kaya. Methods 2001
62
100

Molecular diversity through RNA editing: a balancing act.
Sanaz Farajollahi, Stefan Maas. Trends Genet 2010
122
100

Human Long Noncoding RNA Interactome: Detection, Characterization and Function.
Marek Kazimierczyk, Marta K Kasprowicz, Marta E Kasprzyk, Jan Wrzesinski. Int J Mol Sci 2020
38
100

Pseudouridine synthases.
Tomoko Hamma, Adrian R Ferré-D'Amaré. Chem Biol 2006
157
100

The roles of TET family proteins in development and stem cells.
Jihong Yang, Nazym Bashkenova, Ruge Zang, Xin Huang, Jianlong Wang. Development 2020
9
100

The Landscape of long noncoding RNA classification.
Georges St Laurent, Claes Wahlestedt, Philipp Kapranov. Trends Genet 2015
522
100

Insulin-like growth factor 2 mRNA-binding proteins (IGF2BPs): post-transcriptional drivers of cancer progression?
Jessica L Bell, Kristin Wächter, Britta Mühleck, Nikolaos Pazaitis, Marcel Köhn, Marcell Lederer, Stefan Hüttelmaier. Cell Mol Life Sci 2013
279
100

Computational and NMR studies of RNA duplexes with an internal pseudouridine-adenosine base pair.
Indrajit Deb, Łukasz Popenda, Joanna Sarzyńska, Magdalena Małgowska, Ansuman Lahiri, Zofia Gdaniec, Ryszard Kierzek. Sci Rep 2019
5
100

Long Noncoding RNAs: Molecular Modalities to Organismal Functions.
John L Rinn, Howard Y Chang. Annu Rev Biochem 2020
23
100



Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.