A citation-based method for searching scientific literature


List of co-cited articles
articles co-cited >1



Times Cited
  Times     Co-cited
Similarity



The DHX36-specific-motif (DSM) enhances specificity by accelerating recruitment of DNA G-quadruplex structures.
Bruce Chang-Gu, Devin Bradburn, Philip M Yangyuoru, Rick Russell. Biol Chem 2020
1
100

Regulation of RNA helicase activity: principles and examples.
Pascal Donsbach, Dagmar Klostermeier. Biol Chem 2021
2
50

Regulation of DEAH-box RNA helicases by G-patch proteins.
Katherine E Bohnsack, Ralf Ficner, Markus T Bohnsack, Stefanie Jonas. Biol Chem 2021
8
50



Mtr4 RNA helicase structures and interactions.
Keith J Olsen, Sean J Johnson. Biol Chem 2021
4
50



Phosphorylation by the stress-activated MAPK Slt2 down-regulates the yeast TOR complex 2.
Kristin L Leskoske, Françoise M Roelants, Anita Emmerstorfer-Augustin, Christoph M Augustin, Edward P Si, Jennifer M Hill, Jeremy Thorner. Genes Dev 2018
11
50

Protein kinase Ypk1 phosphorylates regulatory proteins Orm1 and Orm2 to control sphingolipid homeostasis in Saccharomyces cerevisiae.
Françoise M Roelants, David K Breslow, Alexander Muir, Jonathan S Weissman, Jeremy Thorner. Proc Natl Acad Sci U S A 2011
199
50

Identification and characterization of roles for Puf1 and Puf2 proteins in the yeast response to high calcium.
Ofir Haramati, Anastasia Brodov, Idan Yelin, Avigail Atir-Lande, Nitzan Samra, Yoav Arava. Sci Rep 2017
11
50

The intimate relationships of mRNA decay and translation.
Bijoyita Roy, Allan Jacobson. Trends Genet 2013
90
50

A functional variomics tool for discovering drug-resistance genes and drug targets.
Zhiwei Huang, Kaifu Chen, Jianhuai Zhang, Yongxiang Li, Hui Wang, Dandan Cui, Jiangwu Tang, Yong Liu, Xiaomin Shi, Wei Li,[...]. Cell Rep 2013
48
50

Deciphering protein kinase specificity through large-scale analysis of yeast phosphorylation site motifs.
Janine Mok, Philip M Kim, Hugo Y K Lam, Stacy Piccirillo, Xiuqiong Zhou, Grace R Jeschke, Douglas L Sheridan, Sirlester A Parker, Ved Desai, Miri Jwa,[...]. Sci Signal 2010
255
50



PUF proteins: repression, activation and mRNA localization.
Tara Quenault, Trevor Lithgow, Ana Traven. Trends Cell Biol 2011
200
50

Recruitment of the Puf3 protein to its mRNA target for regulation of mRNA decay in yeast.
John S Jackson, S Sean Houshmandi, Florencia Lopez Leban, Wendy M Olivas. RNA 2004
58
50

Dynamic post-transcriptional regulation by Mrn1 links cell wall homeostasis to mitochondrial structure and function.
Kendra Reynaud, Molly Brothers, Michael Ly, Nicholas T Ingolia. PLoS Genet 2021
3
50

Target of rapamycin complex 2-dependent phosphorylation of the coat protein Pan1 by Akl1 controls endocytosis dynamics in Saccharomyces cerevisiae.
Clélia Bourgoint, Delphine Rispal, Marina Berti, Ireos Filipuzzi, Stephen B Helliwell, Manoël Prouteau, Robbie Loewith. J Biol Chem 2018
13
50

Target selection by natural and redesigned PUF proteins.
Douglas F Porter, Yvonne Y Koh, Brett VanVeller, Ronald T Raines, Marvin Wickens. Proc Natl Acad Sci U S A 2015
21
50


A systematic survey identifies prions and illuminates sequence features of prionogenic proteins.
Simon Alberti, Randal Halfmann, Oliver King, Atul Kapila, Susan Lindquist. Cell 2009
675
50

Global analysis of Cdk1 substrate phosphorylation sites provides insights into evolution.
Liam J Holt, Brian B Tuch, Judit Villén, Alexander D Johnson, Steven P Gygi, David O Morgan. Science 2009
635
50

Phosphoproteome Response to Dithiothreitol Reveals Unique Versus Shared Features of Saccharomyces cerevisiae Stress Responses.
Matthew E MacGilvray, Evgenia Shishkova, Michael Place, Ellen R Wagner, Joshua J Coon, Audrey P Gasch. J Proteome Res 2020
13
50

RNA-binding proteins and post-transcriptional gene regulation.
Tina Glisovic, Jennifer L Bachorik, Jeongsik Yong, Gideon Dreyfuss. FEBS Lett 2008
839
50

In-depth and 3-dimensional exploration of the budding yeast phosphoproteome.
Michael C Lanz, Kumar Yugandhar, Shagun Gupta, Ethan J Sanford, Vitor M Faça, Stephanie Vega, Aaron M N Joiner, J Christopher Fromme, Haiyuan Yu, Marcus B Smolka. EMBO Rep 2021
28
50

A conserved RNA-binding protein that regulates sexual fates in the C. elegans hermaphrodite germ line.
B Zhang, M Gallegos, A Puoti, E Durkin, S Fields, J Kimble, M P Wickens. Nature 1997
423
50


TOR Complex 2-Regulated Protein Kinase Fpk1 Stimulates Endocytosis via Inhibition of Ark1/Prk1-Related Protein Kinase Akl1 in Saccharomyces cerevisiae.
Françoise M Roelants, Kristin L Leskoske, Ross T A Pedersen, Alexander Muir, Jeffrey M-H Liu, Gregory C Finnigan, Jeremy Thorner. Mol Cell Biol 2017
21
50


TORC2-dependent protein kinase Ypk1 phosphorylates ceramide synthase to stimulate synthesis of complex sphingolipids.
Alexander Muir, Subramaniam Ramachandran, Françoise M Roelants, Garrett Timmons, Jeremy Thorner. Elife 2014
98
50



Evolutionary Conservation and Diversification of Puf RNA Binding Proteins and Their mRNA Targets.
Gregory J Hogan, Patrick O Brown, Daniel Herschlag. PLoS Biol 2015
33
50

A brave new world of RNA-binding proteins.
Matthias W Hentze, Alfredo Castello, Thomas Schwarzl, Thomas Preiss. Nat Rev Mol Cell Biol 2018
552
50

Roles of Puf proteins in mRNA degradation and translation.
Melanie A Miller, Wendy M Olivas. Wiley Interdiscip Rev RNA 2011
106
50

Functional analysis of three adjacent open reading frames from the right arm of yeast chromosome XVI.
B Waśkiewicz-Staniorowska, J Skała, M Jasiński, M Grenson, A Goffeau, S Ułaszewski. Yeast 1998
5
50

TOR complex 2-regulated protein kinase Ypk1 controls sterol distribution by inhibiting StARkin domain-containing proteins located at plasma membrane-endoplasmic reticulum contact sites.
Françoise M Roelants, Neha Chauhan, Alexander Muir, Jameson C Davis, Anant K Menon, Timothy P Levine, Jeremy Thorner. Mol Biol Cell 2018
19
50

Global analysis of phosphorylation and ubiquitylation cross-talk in protein degradation.
Danielle L Swaney, Pedro Beltrao, Lea Starita, Ailan Guo, John Rush, Stanley Fields, Nevan J Krogan, Judit Villén. Nat Methods 2013
366
50



Mechanisms and Regulation of RNA Condensation in RNP Granule Formation.
Devin Tauber, Gabriel Tauber, Roy Parker. Trends Biochem Sci 2020
51
50

CRISPR-Cas9: A Powerful Tool to Efficiently Engineer Saccharomyces cerevisiae.
João Rainha, Joana L Rodrigues, Lígia R Rodrigues. Life (Basel) 2020
6
50


Protein kinase Gin4 negatively regulates flippase function and controls plasma membrane asymmetry.
Françoise M Roelants, Brooke M Su, Joachim von Wulffen, Subramaniam Ramachandran, Elodie Sartorel, Amy E Trott, Jeremy Thorner. J Cell Biol 2015
23
50


Distinct RNA-binding modules in a single PUF protein cooperate to determine RNA specificity.
Chen Qiu, Robert C Dutcher, Douglas F Porter, Yoav Arava, Marvin Wickens, Traci M Tanaka Hall. Nucleic Acids Res 2019
6
50



Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.