A citation-based method for searching scientific literature

Lauren E Bleakley, Chaseley E McKenzie, Ming S Soh, Ian C Forster, Paulo Pinares-Garcia, Alicia Sedo, Anirudh Kathirvel, Leonid Churilov, Nikola Jancovski, Snezana Maljevic, Samuel F Berkovic, Ingrid E Scheffer, Steven Petrou, Bina Santoro, Christopher A Reid. Brain 2021
Times Cited: 1







List of co-cited articles
articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Models of S/pi interactions in protein structures: comparison of the H2S benzene complex with PDB data.
Ashley L Ringer, Anastasia Senenko, C David Sherrill. Protein Sci 2007
90
100

34
100


Intracellular Mg2+ is a voltage-dependent pore blocker of HCN channels.
Sriharsha Vemana, Shilpi Pandey, H Peter Larsson. Am J Physiol Cell Physiol 2008
17
100

A sulfur-aromatic gate latch is essential for opening of the Orai1 channel pore.
Priscilla S-W Yeung, Christopher E Ing, Megumi Yamashita, Régis Pomès, Murali Prakriya. Elife 2020
8
100

VMD: visual molecular dynamics.
W Humphrey, A Dalke, K Schulten. J Mol Graph 1996
100

Helix breaking transition in the S4 of HCN channel is critical for hyperpolarization-dependent gating.
Marina A Kasimova, Debanjan Tewari, John B Cowgill, Willy Carrasquel Ursuleaz, Jenna L Lin, Lucie Delemotte, Baron Chanda. Elife 2019
24
100

Diagnostic Targeted Resequencing in 349 Patients with Drug-Resistant Pediatric Epilepsies Identifies Causative Mutations in 30 Different Genes.
Elena Parrini, Carla Marini, Davide Mei, Anna Galuppi, Elena Cellini, Daniela Pucatti, Laura Chiti, Domenico Rutigliano, Claudia Bianchini, Simona Virdò,[...]. Hum Mutat 2017
89
100

Crystal structure of a mammalian voltage-dependent Shaker family K+ channel.
Stephen B Long, Ernest B Campbell, Roderick Mackinnon. Science 2005
100

SWISS-MODEL: homology modelling of protein structures and complexes.
Andrew Waterhouse, Martino Bertoni, Stefan Bienert, Gabriel Studer, Gerardo Tauriello, Rafal Gumienny, Florian T Heer, Tjaart A P de Beer, Christine Rempfer, Lorenza Bordoli,[...]. Nucleic Acids Res 2018
100

Integrated allosteric model of voltage gating of HCN channels.
C Altomare, A Bucchi, E Camatini, M Baruscotti, C Viscomi, A Moroni, D DiFrancesco. J Gen Physiol 2001
111
100



The S4-S5 linker couples voltage sensing and activation of pacemaker channels.
J Chen, J S Mitcheson, M Tristani-Firouzi, M Lin, M C Sanguinetti. Proc Natl Acad Sci U S A 2001
121
100


Gabapentin Modulates HCN4 Channel Voltage-Dependence.
Han-Shen Tae, Kelly M Smith, A Marie Phillips, Kieran A Boyle, Melody Li, Ian C Forster, Robert J Hatch, Robert Richardson, David I Hughes, Brett A Graham,[...]. Front Pharmacol 2017
16
100


CHARMM-GUI Membrane Builder toward realistic biological membrane simulations.
Emilia L Wu, Xi Cheng, Sunhwan Jo, Huan Rui, Kevin C Song, Eder M Dávila-Contreras, Yifei Qi, Jumin Lee, Viviana Monje-Galvan, Richard M Venable,[...]. J Comput Chem 2014
852
100

Gating mechanism of hyperpolarization-activated HCN pacemaker channels.
Rosamary Ramentol, Marta E Perez, H Peter Larsson. Nat Commun 2020
11
100

Cardiac and neuronal HCN channelopathies.
Ilaria Rivolta, Anna Binda, Alessio Masi, Jacopo C DiFrancesco. Pflugers Arch 2020
14
100

Hyperpolarization-activated cation channels: from genes to function.
Martin Biel, Christian Wahl-Schott, Stylianos Michalakis, Xiangang Zong. Physiol Rev 2009
626
100

All-atom empirical potential for molecular modeling and dynamics studies of proteins.
A D MacKerell, D Bashford, M Bellott, R L Dunbrack, J D Evanseck, M J Field, S Fischer, J Gao, H Guo, S Ha,[...]. J Phys Chem B 1998
100




HCN2 and HCN4 isoforms self-assemble and co-assemble with equal preference to form functional pacemaker channels.
Gina M Whitaker, Damiano Angoli, Hamed Nazzari, Ryuichi Shigemoto, Eric A Accili. J Biol Chem 2007
43
100

All four subunits of HCN2 channels contribute to the activation gating in an additive but intricate manner.
Mallikarjuna Rao Sunkara, Tina Schwabe, Gunter Ehrlich, Jana Kusch, Klaus Benndorf. J Gen Physiol 2018
7
100

The methionine-aromatic motif plays a unique role in stabilizing protein structure.
Christopher C Valley, Alessandro Cembran, Jason D Perlmutter, Andrew K Lewis, Nicholas P Labello, Jiali Gao, Jonathan N Sachs. J Biol Chem 2012
164
100

De novo mutations in HCN1 cause early infantile epileptic encephalopathy.
Caroline Nava, Carine Dalle, Agnès Rastetter, Pasquale Striano, Carolien G F de Kovel, Rima Nabbout, Claude Cancès, Dorothée Ville, Eva H Brilstra, Giuseppe Gobbi,[...]. Nat Genet 2014
120
100

GROMACS: fast, flexible, and free.
David Van Der Spoel, Erik Lindahl, Berk Hess, Gerrit Groenhof, Alan E Mark, Herman J C Berendsen. J Comput Chem 2005
100


Bipolar switching by HCN voltage sensor underlies hyperpolarization activation.
John Cowgill, Vadim A Klenchin, Claudia Alvarez-Baron, Debanjan Tewari, Alexander Blair, Baron Chanda. Proc Natl Acad Sci U S A 2019
19
100


Kinetic relationship between the voltage sensor and the activation gate in spHCN channels.
Andrew Bruening-Wright, Fredrik Elinder, H Peter Larsson. J Gen Physiol 2007
40
100

Canonical sampling through velocity rescaling.
Giovanni Bussi, Davide Donadio, Michele Parrinello. J Chem Phys 2007
100

CHARMM-GUI: a web-based graphical user interface for CHARMM.
Sunhwan Jo, Taehoon Kim, Vidyashankara G Iyer, Wonpil Im. J Comput Chem 2008
100

Heteromeric HCN1-HCN4 channels: a comparison with native pacemaker channels from the rabbit sinoatrial node.
Claudia Altomare, Benedetta Terragni, Chiara Brioschi, Raffaella Milanesi, Cinzia Pagliuca, Carlo Viscomi, Anna Moroni, Mirko Baruscotti, Dario DiFrancesco. J Physiol 2003
158
100

Structures of the Human HCN1 Hyperpolarization-Activated Channel.
Chia-Hsueh Lee, Roderick MacKinnon. Cell 2017
168
100

Noncanonical mechanism of voltage sensor coupling to pore revealed by tandem dimers of Shaker.
João L Carvalho-de-Souza, Francisco Bezanilla. Nat Commun 2019
12
100

Molecular mechanism of cAMP modulation of HCN pacemaker channels.
B J Wainger, M DeGennaro, B Santoro, S A Siegelbaum, G R Tibbs. Nature 2001
350
100


The HCN domain couples voltage gating and cAMP response in hyperpolarization-activated cyclic nucleotide-gated channels.
Alessandro Porro, Andrea Saponaro, Federica Gasparri, Daniel Bauer, Christine Gross, Matteo Pisoni, Gerardo Abbandonato, Kay Hamacher, Bina Santoro, Gerhard Thiel,[...]. Elife 2019
16
100

ILAE classification of the epilepsies: Position paper of the ILAE Commission for Classification and Terminology.
Ingrid E Scheffer, Samuel Berkovic, Giuseppe Capovilla, Mary B Connolly, Jacqueline French, Laura Guilhoto, Edouard Hirsch, Satish Jain, Gary W Mathern, Solomon L Moshé,[...]. Epilepsia 2017
100

Gating interaction maps reveal a noncanonical electromechanical coupling mode in the Shaker K+ channel.
Ana I Fernández-Mariño, Tyler J Harpole, Kevin Oelstrom, Lucie Delemotte, Baron Chanda. Nat Struct Mol Biol 2018
34
100


CHARMM-GUI Input Generator for NAMD, GROMACS, AMBER, OpenMM, and CHARMM/OpenMM Simulations Using the CHARMM36 Additive Force Field.
Jumin Lee, Xi Cheng, Jason M Swails, Min Sun Yeom, Peter K Eastman, Justin A Lemkul, Shuai Wei, Joshua Buckner, Jong Cheol Jeong, Yifei Qi,[...]. J Chem Theory Comput 2016
970
100

A novel de novo HCN1 loss-of-function mutation in genetic generalized epilepsy causing increased neuronal excitability.
Mattia Bonzanni, Jacopo C DiFrancesco, Raffaella Milanesi, Giulia Campostrini, Barbara Castellotti, Annalisa Bucchi, Mirko Baruscotti, Carlo Ferrarese, Silvana Franceschetti, Laura Canafoglia,[...]. Neurobiol Dis 2018
17
100

GROMACS 4.5: a high-throughput and highly parallel open source molecular simulation toolkit.
Sander Pronk, Szilárd Páll, Roland Schulz, Per Larsson, Pär Bjelkmar, Rossen Apostolov, Michael R Shirts, Jeremy C Smith, Peter M Kasson, David van der Spoel,[...]. Bioinformatics 2013
100




Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.