A citation-based method for searching scientific literature

Rania Bassiouni, Lee D Gibbs, David W Craig, John D Carpten, Troy A McEachron. Mol Cell 2021
Times Cited: 3







List of co-cited articles
16 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Laser capture microscopy coupled with Smart-seq2 for precise spatial transcriptomic profiling.
Susanne Nichterwitz, Geng Chen, Julio Aguila Benitez, Marlene Yilmaz, Helena Storvall, Ming Cao, Rickard Sandberg, Qiaolin Deng, Eva Hedlund. Nat Commun 2016
123
100

Single-cell and spatial transcriptomics enables probabilistic inference of cell type topography.
Alma Andersson, Joseph Bergenstråhle, Michaela Asp, Ludvig Bergenstråhle, Aleksandra Jurek, José Fernández Navarro, Joakim Lundeberg. Commun Biol 2020
40
66

Spatially Resolved Transcriptomes-Next Generation Tools for Tissue Exploration.
Michaela Asp, Joseph Bergenstråhle, Joakim Lundeberg. Bioessays 2020
65
66

Spatial transcriptomic analysis of cryosectioned tissue samples with Geo-seq.
Jun Chen, Shengbao Suo, Patrick Pl Tam, Jing-Dong J Han, Guangdun Peng, Naihe Jing. Nat Protoc 2017
94
66


RNA imaging. Spatially resolved, highly multiplexed RNA profiling in single cells.
Kok Hao Chen, Alistair N Boettiger, Jeffrey R Moffitt, Siyuan Wang, Xiaowei Zhuang. Science 2015
714
66

Massively parallel digital transcriptional profiling of single cells.
Grace X Y Zheng, Jessica M Terry, Phillip Belgrader, Paul Ryvkin, Zachary W Bent, Ryan Wilson, Solongo B Ziraldo, Tobias D Wheeler, Geoff P McDermott, Junjie Zhu,[...]. Nat Commun 2017
66

Droplet barcoding for single-cell transcriptomics applied to embryonic stem cells.
Allon M Klein, Linas Mazutis, Ilke Akartuna, Naren Tallapragada, Adrian Veres, Victor Li, Leonid Peshkin, David A Weitz, Marc W Kirschner. Cell 2015
66

Fluorescent in situ sequencing (FISSEQ) of RNA for gene expression profiling in intact cells and tissues.
Je Hyuk Lee, Evan R Daugharthy, Jonathan Scheiman, Reza Kalhor, Thomas C Ferrante, Richard Terry, Brian M Turczyk, Joyce L Yang, Ho Suk Lee, John Aach,[...]. Nat Protoc 2015
218
66

Highly multiplexed subcellular RNA sequencing in situ.
Je Hyuk Lee, Evan R Daugharthy, Jonathan Scheiman, Reza Kalhor, Joyce L Yang, Thomas C Ferrante, Richard Terry, Sauveur S F Jeanty, Chao Li, Ryoji Amamoto,[...]. Science 2014
475
66

Visualization and analysis of gene expression in tissue sections by spatial transcriptomics.
Patrik L Ståhl, Fredrik Salmén, Sanja Vickovic, Anna Lundmark, José Fernández Navarro, Jens Magnusson, Stefania Giacomello, Michaela Asp, Jakub O Westholm, Mikael Huss,[...]. Science 2016
625
66

High-definition spatial transcriptomics for in situ tissue profiling.
Sanja Vickovic, Gökcen Eraslan, Fredrik Salmén, Johanna Klughammer, Linnea Stenbeck, Denis Schapiro, Tarmo Äijö, Richard Bonneau, Ludvig Bergenstråhle, José Fernandéz Navarro,[...]. Nat Methods 2019
208
66

Slide-seq: A scalable technology for measuring genome-wide expression at high spatial resolution.
Samuel G Rodriques, Robert R Stickels, Aleksandrina Goeva, Carly A Martin, Evan Murray, Charles R Vanderburg, Joshua Welch, Linlin M Chen, Fei Chen, Evan Z Macosko. Science 2019
440
66

Integrating single-cell transcriptomic data across different conditions, technologies, and species.
Andrew Butler, Paul Hoffman, Peter Smibert, Efthymia Papalexi, Rahul Satija. Nat Biotechnol 2018
66

Multiplex digital spatial profiling of proteins and RNA in fixed tissue.
Christopher R Merritt, Giang T Ong, Sarah E Church, Kristi Barker, Patrick Danaher, Gary Geiss, Margaret Hoang, Jaemyeong Jung, Yan Liang, Jill McKay-Fleisch,[...]. Nat Biotechnol 2020
80
66

Three-dimensional intact-tissue sequencing of single-cell transcriptional states.
Xiao Wang, William E Allen, Matthew A Wright, Emily L Sylwestrak, Nikolay Samusik, Sam Vesuna, Kathryn Evans, Cindy Liu, Charu Ramakrishnan, Jia Liu,[...]. Science 2018
326
66

All-digital histopathology by infrared-optical hybrid microscopy.
Martin Schnell, Shachi Mittal, Kianoush Falahkheirkhah, Anirudh Mittal, Kevin Yeh, Seth Kenkel, Andre Kajdacsy-Balla, P Scott Carney, Rohit Bhargava. Proc Natl Acad Sci U S A 2020
24
33

A pilot study utilizing multi-omic molecular profiling to find potential targets and select individualized treatments for patients with previously treated metastatic breast cancer.
Gayle S Jameson, Emanuel F Petricoin, Jasgit Sachdev, Lance A Liotta, David M Loesch, Stephen P Anthony, Manpreet K Chadha, Julia D Wulfkuhle, Rosa I Gallagher, Kimberley A Reeder,[...]. Breast Cancer Res Treat 2014
54
33

Multiclonal Invasion in Breast Tumors Identified by Topographic Single Cell Sequencing.
Anna K Casasent, Aislyn Schalck, Ruli Gao, Emi Sei, Annalyssa Long, William Pangburn, Tod Casasent, Funda Meric-Bernstam, Mary E Edgerton, Nicholas E Navin. Cell 2018
157
33

Functional protein pathway activation mapping of the progression of normal skin to squamous cell carcinoma.
Janine G Einspahr, Valerie Calvert, David S Alberts, Clara Curiel-Lewandrowski, James Warneke, Robert Krouse, Steven P Stratton, Lance Liotta, Caterina Longo, Giovanni Pellacani,[...]. Cancer Prev Res (Phila) 2012
68
33

Role of 18F-PET/CT in Predicting Prognosis of Patients With Breast Cancer After Neoadjuvant Chemotherapy.
Etsushi Akimoto, Takayuki Kadoya, Keiko Kajitani, Akiko Emi, Hideo Shigematsu, Masahiro Ohara, Norio Masumoto, Morihito Okada. Clin Breast Cancer 2018
8
33

In situ 10-cell RNA sequencing in tissue and tumor biopsy samples.
Shambhavi Singh, Lixin Wang, Dylan L Schaff, Matthew D Sutcliffe, Alex F Koeppel, Jungeun Kim, Suna Onengut-Gumuscu, Kwon-Sik Park, Hui Zong, Kevin A Janes. Sci Rep 2019
14
33

Implementation and evaluation of amyloidosis subtyping by laser-capture microdissection and tandem mass spectrometry.
Peter Mollee, Samuel Boros, Dorothy Loo, Jayde E Ruelcke, Vanessa A Lakis, Kim-Anh Lê Cao, Patricia Renaut, Michelle M Hill. Clin Proteomics 2016
37
33

Parameterizing cell-to-cell regulatory heterogeneities via stochastic transcriptional profiles.
Sameer S Bajikar, Christiane Fuchs, Andreas Roller, Fabian J Theis, Kevin A Janes. Proc Natl Acad Sci U S A 2014
25
33

High-Plex Predictive Marker Discovery for Melanoma Immunotherapy-Treated Patients Using Digital Spatial Profiling.
Maria I Toki, Christopher R Merritt, Pok Fai Wong, James W Smithy, Harriet M Kluger, Konstantinos N Syrigos, Giang T Ong, Sarah E Warren, Joseph M Beechem, David L Rimm. Clin Cancer Res 2019
49
33

18F-FDG PET/CT for early prediction of response to neoadjuvant lapatinib, trastuzumab, and their combination in HER2-positive breast cancer: results from Neo-ALTTO.
Geraldine Gebhart, Cristina Gámez, Eileen Holmes, Javier Robles, Camilo Garcia, Montserrat Cortés, Evandro de Azambuja, Karine Fauria, Veerle Van Dooren, Gursel Aktan,[...]. J Nucl Med 2013
91
33

Identifying single-cell molecular programs by stochastic profiling.
Kevin A Janes, Chun-Chao Wang, Karin J Holmberg, Kristin Cabral, Joan S Brugge. Nat Methods 2010
83
33



The impact of ultraviolet- and infrared-based laser microdissection technology on phosphoprotein detection in the laser microdissection-reverse phase protein array workflow.
Allison L Hunt, Mariaelena Pierobon, Elisa Baldelli, Julie Oliver, Dave Mitchell, Glenn Gist, Nicholas W Bateman, G Larry Maxwell, Emanuel F Petricoin, Thomas P Conrads. Clin Proteomics 2020
3
33

Laser Capture Microdissection of Murine Embryonic Neural Crest Cells.
Robert M Greene, Irina Smolenkova, Michele Pisano. Methods Mol Biol 2019
1
100

Elevated TNFR1 and serotonin in bone metastasis are correlated with poor survival following bone metastasis diagnosis for both carcinoma and sarcoma primary tumors.
Antonella Chiechi, Chiara Novello, Giovanna Magagnoli, Emanuel F Petricoin, Jianghong Deng, Maria S Benassi, Piero Picci, Iosif Vaisman, Virginia Espina, Lance A Liotta. Clin Cancer Res 2013
26
33

Spatially Resolved Proteome Mapping of Laser Capture Microdissected Tissue with Automated Sample Transfer to Nanodroplets.
Ying Zhu, Maowei Dou, Paul D Piehowski, Yiran Liang, Fangjun Wang, Rosalie K Chu, William B Chrisler, Jordan N Smith, Kaitlynn C Schwarz, Yufeng Shen,[...]. Mol Cell Proteomics 2018
46
33

Combining laser capture microdissection and proteomics reveals an active translation machinery controlling invadosome formation.
Zakaria Ezzoukhry, Elodie Henriet, Fabrice P Cordelières, Jean-William Dupuy, Marlène Maître, Nathan Gay, Sylvaine Di-Tommaso, Luc Mercier, Jacky G Goetz, Marion Peter,[...]. Nat Commun 2018
20
33

Immunomodulation of the Tumor Microenvironment: Turn Foe Into Friend.
Hanne Locy, Sven de Mey, Wout de Mey, Mark De Ridder, Kris Thielemans, Sarah K Maenhout. Front Immunol 2018
71
33


Spatial and molecular resolution of diffuse malignant mesothelioma heterogeneity by integrating label-free FTIR imaging, laser capture microdissection and proteomics.
Frederik Großerueschkamp, Thilo Bracht, Hanna C Diehl, Claus Kuepper, Maike Ahrens, Angela Kallenbach-Thieltges, Axel Mosig, Martin Eisenacher, Katrin Marcus, Thomas Behrens,[...]. Sci Rep 2017
33
33

Laser capture microdissection.
M R Emmert-Buck, R F Bonner, P D Smith, R F Chuaqui, Z Zhuang, S R Goldstein, R A Weiss, L A Liotta. Science 1996
33

Mapping molecular networks using proteomics: a vision for patient-tailored combination therapy.
Emanuel F Petricoin, Verena E Bichsel, Valerie S Calvert, Virginia Espina, Mary Winters, Lynn Young, Claudio Belluco, Bruce J Trock, Marc Lippman, David A Fishman,[...]. J Clin Oncol 2005
130
33

Towards personalized treatment for early stage HER2-positive breast cancer.
Kristina Goutsouliak, Jamunarani Veeraraghavan, Vidyalakshmi Sethunath, Carmine De Angelis, C Kent Osborne, Mothaffar F Rimawi, Rachel Schiff. Nat Rev Clin Oncol 2020
46
33

Experimental microdissection enables functional harmonisation of pancreatic cancer subtypes.
Carlo Maurer, Sam R Holmstrom, Jing He, Pasquale Laise, Tao Su, Aqeel Ahmed, Hanina Hibshoosh, John A Chabot, Paul E Oberstein, Antonia R Sepulveda,[...]. Gut 2019
65
33

Mechanism of action biomarkers predicting response to AKT inhibition in the I-SPY 2 breast cancer trial.
Denise M Wolf, Christina Yau, Julia Wulfkuhle, Lamorna Brown-Swigart, Rosa I Gallagher, Mark Jesus M Magbanua, Nick O'Grady, Gillian Hirst, Smita Asare, Debu Tripathy,[...]. NPJ Breast Cancer 2020
9
33



Escalation and de-escalation in HER2 positive early breast cancer.
Maria Vittoria Dieci, Grazia Vernaci, Valentina Guarneri. Curr Opin Oncol 2019
8
33

AGO Recommendations for the Diagnosis and Treatment of Patients with Locally Advanced and Metastatic Breast Cancer: Update 2020.
Nina Ditsch, Michael Untch, Cornelia Kolberg-Liedtke, Christian Jackisch, David Krug, Michael Friedrich, Wolfgang Janni, Volkmar Müller, Ute-Susann Albert, Malgorzata Banys-Paluchowski,[...]. Breast Care (Basel) 2020
19
33

Pathological complete response and long-term clinical benefit in breast cancer: the CTNeoBC pooled analysis.
Patricia Cortazar, Lijun Zhang, Michael Untch, Keyur Mehta, Joseph P Costantino, Norman Wolmark, Hervé Bonnefoi, David Cameron, Luca Gianni, Pinuccia Valagussa,[...]. Lancet 2014
33

Clinical activity of pertuzumab (rhuMAb 2C4), a HER dimerization inhibitor, in advanced ovarian cancer: potential predictive relationship with tumor HER2 activation status.
Michael S Gordon, Daniela Matei, Carol Aghajanian, Ursula A Matulonis, Molly Brewer, Gini F Fleming, John D Hainsworth, Agustin A Garcia, Mark D Pegram, Russell J Schilder,[...]. J Clin Oncol 2006
179
33

Comparative quantitative proteomic analysis of disease stratified laser captured microdissected human islets identifies proteins and pathways potentially related to type 1 diabetes.
Julius O Nyalwidhe, Wojciech J Grzesik, Tanya C Burch, Michele L Semeraro, Tayab Waseem, Ivan C Gerling, Raghavendra G Mirmira, Margaret A Morris, Jerry L Nadler. PLoS One 2017
17
33

Determination of HER2 phosphorylation at tyrosine 1221/1222 improves prediction of poor survival for breast cancer patients with hormone receptor-positive tumors.
Thomas Frogne, Anne-Vibeke Laenkholm, Maria B Lyng, Katrine Lütken Henriksen, Anne E Lykkesfeldt. Breast Cancer Res 2009
62
33


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.