A citation-based method for searching scientific literature

John A Smolka, Lionel A Sanz, Stella R Hartono, Frédéric Chédin. J Cell Biol 2021
Times Cited: 23







List of co-cited articles
223 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


R-loop formation is a distinctive characteristic of unmethylated human CpG island promoters.
Paul A Ginno, Paul L Lott, Holly C Christensen, Ian Korf, Frédéric Chédin. Mol Cell 2012
476
52

R-Loops as Cellular Regulators and Genomic Threats.
Madzia P Crossley, Michael Bocek, Karlene A Cimprich. Mol Cell 2019
266
52


Human senataxin resolves RNA/DNA hybrids formed at transcriptional pause sites to promote Xrn2-dependent termination.
Konstantina Skourti-Stathaki, Nicholas J Proudfoot, Natalia Gromak. Mol Cell 2011
470
43

Prevalent, Dynamic, and Conserved R-Loop Structures Associate with Specific Epigenomic Signatures in Mammals.
Lionel A Sanz, Stella R Hartono, Yoong Wearn Lim, Sandra Steyaert, Aparna Rajpurkar, Paul A Ginno, Xiaoqin Xu, Frédéric Chédin. Mol Cell 2016
268
39

R-ChIP Using Inactive RNase H Reveals Dynamic Coupling of R-loops with Transcriptional Pausing at Gene Promoters.
Liang Chen, Jia-Yu Chen, Xuan Zhang, Ying Gu, Rui Xiao, Changwei Shao, Peng Tang, Hao Qian, Daji Luo, Hairi Li,[...]. Mol Cell 2017
153
39

Transcription-coupled nucleotide excision repair factors promote R-loop-induced genome instability.
Julie Sollier, Caroline Townsend Stork, María L García-Rubio, Renee D Paulsen, Andrés Aguilera, Karlene A Cimprich. Mol Cell 2014
317
39

The Affinity of the S9.6 Antibody for Double-Stranded RNAs Impacts the Accurate Mapping of R-Loops in Fission Yeast.
Stella R Hartono, Amélie Malapert, Pénélope Legros, Pascal Bernard, Frédéric Chédin, Vincent Vanoosthuyse. J Mol Biol 2018
70
34

R-loops at immunoglobulin class switch regions in the chromosomes of stimulated B cells.
Kefei Yu, Frederic Chedin, Chih-Lin Hsieh, Thomas E Wilson, Michael R Lieber. Nat Immunol 2003
525
34

Characterization of monoclonal antibody to DNA.RNA and its application to immunodetection of hybrids.
S J Boguslawski, D E Smith, M A Michalak, K E Mickelson, C O Yehle, W L Patterson, R J Carrico. J Immunol Methods 1986
263
34

S1-DRIP-seq identifies high expression and polyA tracts as major contributors to R-loop formation.
Lamia Wahba, Lorenzo Costantino, Frederick J Tan, Anjali Zimmer, Douglas Koshland. Genes Dev 2016
150
34

Ribonuclease H: the enzymes in eukaryotes.
Susana M Cerritelli, Robert J Crouch. FEBS J 2009
457
34

Human proteins that interact with RNA/DNA hybrids.
Isabel X Wang, Christopher Grunseich, Jennifer Fox, Joshua Burdick, Zhengwei Zhu, Niema Ravazian, Markus Hafner, Vivian G Cheung. Genome Res 2018
67
34

Senataxin Mutation Reveals How R-Loops Promote Transcription by Blocking DNA Methylation at Gene Promoters.
Christopher Grunseich, Isabel X Wang, Jason A Watts, Joshua T Burdick, Robert D Guber, Zhengwei Zhu, Alan Bruzel, Tyler Lanman, Kelian Chen, Alice B Schindler,[...]. Mol Cell 2018
87
30

Topoisomerase I suppresses genomic instability by preventing interference between replication and transcription.
Sandie Tuduri, Laure Crabbé, Chiara Conti, Hélène Tourrière, Heidi Holtgreve-Grez, Anna Jauch, Véronique Pantesco, John De Vos, Aubin Thomas, Charles Theillet,[...]. Nat Cell Biol 2009
343
30

R loops: from transcription byproducts to threats to genome stability.
Andrés Aguilera, Tatiana García-Muse. Mol Cell 2012
605
30

Senataxin resolves RNA:DNA hybrids forming at DNA double-strand breaks to prevent translocations.
Sarah Cohen, Nadine Puget, Yea-Lih Lin, Thomas Clouaire, Marion Aguirrebengoa, Vincent Rocher, Philippe Pasero, Yvan Canitrot, Gaëlle Legube. Nat Commun 2018
162
30

A genome-wide siRNA screen reveals diverse cellular processes and pathways that mediate genome stability.
Renee D Paulsen, Deena V Soni, Roy Wollman, Angela T Hahn, Muh-Ching Yee, Anna Guan, Jayne A Hesley, Steven C Miller, Evan F Cromwell, David E Solow-Cordero,[...]. Mol Cell 2009
385
30


Regulatory R-loops as facilitators of gene expression and genome stability.
Christof Niehrs, Brian Luke. Nat Rev Mol Cell Biol 2020
122
26

The sub-nanomolar binding of DNA-RNA hybrids by the single-chain Fv fragment of antibody S9.6.
Damilola D Phillips, David N Garboczi, Kavita Singh, Zonglin Hu, Stephen H Leppla, Clinton E Leysath. J Mol Recognit 2013
84
26

Breaking bad: R-loops and genome integrity.
Julie Sollier, Karlene A Cimprich. Trends Cell Biol 2015
204
26

R Loops: From Physiological to Pathological Roles.
Tatiana García-Muse, Andrés Aguilera. Cell 2019
189
26

Transient RNA-DNA Hybrids Are Required for Efficient Double-Strand Break Repair.
Corina Ohle, Rafael Tesorero, Géza Schermann, Nikolay Dobrev, Irmgard Sinning, Tamás Fischer. Cell 2016
227
26

Best practices for the visualization, mapping, and manipulation of R-loops.
Frédéric Chédin, Stella R Hartono, Lionel A Sanz, Vincent Vanoosthuyse. EMBO J 2021
23
26


Topoisomerase 1 prevents replication stress at R-loop-enriched transcription termination sites.
Alexy Promonet, Ismaël Padioleau, Yaqun Liu, Lionel Sanz, Anna Biernacka, Anne-Lyne Schmitz, Magdalena Skrzypczak, Amélie Sarrazin, Clément Mettling, Maga Rowicka,[...]. Nat Commun 2020
44
26

SIRT7 and the DEAD-box helicase DDX21 cooperate to resolve genomic R loops and safeguard genome stability.
Chenlin Song, Agnes Hotz-Wagenblatt, Renate Voit, Ingrid Grummt. Genes Dev 2017
98
26


Mapping Native R-Loops Genome-wide Using a Targeted Nuclease Approach.
Qingqing Yan, Emily J Shields, Roberto Bonasio, Kavitha Sarma. Cell Rep 2019
33
21

R-loop-mediated genomic instability is caused by impairment of replication fork progression.
Wenjian Gan, Zhishuang Guan, Jie Liu, Ting Gui, Keng Shen, James L Manley, Xialu Li. Genes Dev 2011
270
21

The R-loop is a common chromatin feature of the Arabidopsis genome.
Wei Xu, Hui Xu, Kuan Li, Yingxu Fan, Yang Liu, Xuerui Yang, Qianwen Sun. Nat Plants 2017
87
21


RNA-DNA hybrid (R-loop) immunoprecipitation mapping: an analytical workflow to evaluate inherent biases.
László Halász, Zsolt Karányi, Beáta Boros-Oláh, Tímea Kuik-Rózsa, Éva Sipos, Éva Nagy, Ágnes Mosolygó-L, Anett Mázló, Éva Rajnavölgyi, Gábor Halmos,[...]. Genome Res 2017
48
21

BRCA2 prevents R-loop accumulation and associates with TREX-2 mRNA export factor PCID2.
Vaibhav Bhatia, Sonia I Barroso, María L García-Rubio, Emanuela Tumini, Emilia Herrera-Moyano, Andrés Aguilera. Nature 2014
308
21

Genome-wide DNA hypomethylation and RNA:DNA hybrid accumulation in Aicardi-Goutières syndrome.
Yoong Wearn Lim, Lionel A Sanz, Xiaoqin Xu, Stella R Hartono, Frédéric Chédin. Elife 2015
100
21

GADD45A binds R-loops and recruits TET1 to CpG island promoters.
Khelifa Arab, Emil Karaulanov, Michael Musheev, Philipp Trnka, Andrea Schäfer, Ingrid Grummt, Christof Niehrs. Nat Genet 2019
92
21

A mitosis-specific and R loop-driven ATR pathway promotes faithful chromosome segregation.
Lilian Kabeche, Hai Dang Nguyen, Rémi Buisson, Lee Zou. Science 2018
135
21

R-Loops Promote Antisense Transcription across the Mammalian Genome.
Sue Mei Tan-Wong, Somdutta Dhir, Nick J Proudfoot. Mol Cell 2019
64
21

Specific recognition of RNA/DNA hybrid and enhancement of human RNase H1 activity by HBD.
Marcin Nowotny, Susana M Cerritelli, Rodolfo Ghirlando, Sergei A Gaidamakov, Robert J Crouch, Wei Yang. EMBO J 2008
64
21

The Fanconi Anemia Pathway Protects Genome Integrity from R-loops.
María L García-Rubio, Carmen Pérez-Calero, Sonia I Barroso, Emanuela Tumini, Emilia Herrera-Moyano, Iván V Rosado, Andrés Aguilera. PLoS Genet 2015
175
21

The DNA damage response acts as a safeguard against harmful DNA-RNA hybrids of different origins.
Sonia Barroso, Emilia Herrera-Moyano, Sergio Muñoz, María García-Rubio, Belén Gómez-González, Andrés Aguilera. EMBO Rep 2019
41
21

Structure of human RNase H1 complexed with an RNA/DNA hybrid: insight into HIV reverse transcription.
Marcin Nowotny, Sergei A Gaidamakov, Rodolfo Ghirlando, Susana M Cerritelli, Robert J Crouch, Wei Yang. Mol Cell 2007
223
21

Sae2/CtIP prevents R-loop accumulation in eukaryotic cells.
Nodar Makharashvili, Sucheta Arora, Yizhi Yin, Qiong Fu, Xuemei Wen, Ji-Hoon Lee, Chung-Hsuan Kao, Justin Wc Leung, Kyle M Miller, Tanya T Paull. Elife 2018
39
21

The SWI/SNF chromatin remodeling complex helps resolve R-loop-mediated transcription-replication conflicts.
Aleix Bayona-Feliu, Sonia Barroso, Sergio Muñoz, Andrés Aguilera. Nat Genet 2021
28
21

Transcription-Replication Conflict Orientation Modulates R-Loop Levels and Activates Distinct DNA Damage Responses.
Stephan Hamperl, Michael J Bocek, Joshua C Saldivar, Tomek Swigut, Karlene A Cimprich. Cell 2017
259
21


R-ChIP for genome-wide mapping of R-loops by using catalytically inactive RNASEH1.
Jia-Yu Chen, Xuan Zhang, Xiang-Dong Fu, Liang Chen. Nat Protoc 2019
26
21

Catalytically inactive, purified RNase H1: A specific and sensitive probe for RNA-DNA hybrid imaging.
Magdalena P Crossley, Joshua R Brickner, Chenlin Song, Su Mon Thin Zar, Su S Maw, Frédéric Chédin, Miaw-Sheue Tsai, Karlene A Cimprich. J Cell Biol 2021
13
38



Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.