A citation-based method for searching scientific literature

George C Linderman. Methods Mol Biol 2021
Times Cited: 1







List of co-cited articles
articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Comprehensive analysis of gene expression in human retina and supporting tissues.
Mingyao Li, Cheng Jia, Krista L Kazmierkiewicz, Anita S Bowman, Lifeng Tian, Yichuan Liu, Neel A Gupta, Harini V Gudiseva, Stephanie S Yee, Mijin Kim,[...]. Hum Mol Genet 2014
84
100


Conserved microRNA pathway regulates developmental timing of retinal neurogenesis.
Anna La Torre, Sean Georgi, Thomas A Reh. Proc Natl Acad Sci U S A 2013
146
100

DANPOS: dynamic analysis of nucleosome position and occupancy by sequencing.
Kaifu Chen, Yuanxin Xi, Xuewen Pan, Zhaoyu Li, Klaus Kaestner, Jessica Tyler, Sharon Dent, Xiangwei He, Wei Li. Genome Res 2013
197
100

The Three-Dimensional Organization of Mammalian Genomes.
Miao Yu, Bing Ren. Annu Rev Cell Dev Biol 2017
153
100

Transcription factor SOX9 plays a key role in the regulation of visual cycle gene expression in the retinal pigment epithelium.
Tomohiro Masuda, Karl Wahlin, Jun Wan, Jianfei Hu, Julien Maruotti, Xue Yang, Jared Iacovelli, Natalie Wolkow, Ralf Kist, Joshua L Dunaief,[...]. J Biol Chem 2014
31
100

Characterization of cell fate probabilities in single-cell data with Palantir.
Manu Setty, Vaidotas Kiseliovas, Jacob Levine, Adam Gayoso, Linas Mazutis, Dana Pe'er. Nat Biotechnol 2019
94
100

Casz1 controls higher-order nuclear organization in rod photoreceptors.
Pierre Mattar, Milanka Stevanovic, Ivana Nad, Michel Cayouette. Proc Natl Acad Sci U S A 2018
18
100

SMARCA4 regulates gene expression and higher-order chromatin structure in proliferating mammary epithelial cells.
A Rasim Barutcu, Bryan R Lajoie, Andrew J Fritz, Rachel P McCord, Jeffrey A Nickerson, Andre J van Wijnen, Jane B Lian, Janet L Stein, Job Dekker, Gary S Stein,[...]. Genome Res 2016
58
100

The miR-17/106-p38 axis is a key regulator of the neurogenic-to-gliogenic transition in developing neural stem/progenitor cells.
Hayato Naka-Kaneda, Shiho Nakamura, Mana Igarashi, Hisashi Aoi, Hiroaki Kanki, Jun Tsuyama, Shuichi Tsutsumi, Hiroyuki Aburatani, Takuya Shimazaki, Hideyuki Okano. Proc Natl Acad Sci U S A 2014
41
100

Molecular signatures of retinal ganglion cells revealed through single cell profiling.
Lauren A Laboissonniere, Jillian J Goetz, Gregory M Martin, Ran Bi, Terry J S Lund, Laura Ellson, Madison R Lynch, Bailey Mooney, Hannah Wickham, Peng Liu,[...]. Sci Rep 2019
24
100

MicroRNAs MiR-17, MiR-20a, and MiR-106b act in concert to modulate E2F activity on cell cycle arrest during neuronal lineage differentiation of USSC.
Hans-Ingo Trompeter, Hassane Abbad, Katharina M Iwaniuk, Markus Hafner, Neil Renwick, Thomas Tuschl, Jessica Schira, Hans Werner Müller, Peter Wernet. PLoS One 2011
102
100

Excessive HDAC activation is critical for neurodegeneration in the rd1 mouse.
J Sancho-Pelluz, M V Alavi, A Sahaboglu, S Kustermann, P Farinelli, S Azadi, T van Veen, F J Romero, F Paquet-Durand, P Ekström. Cell Death Dis 2010
78
100

The retina as a window to the brain-from eye research to CNS disorders.
Anat London, Inbal Benhar, Michal Schwartz. Nat Rev Neurol 2013
465
100

Reproducible inference of transcription factor footprints in ATAC-seq and DNase-seq datasets using protocol-specific bias modeling.
Aslıhan Karabacak Calviello, Antje Hirsekorn, Ricardo Wurmus, Dilmurat Yusuf, Uwe Ohler. Genome Biol 2019
32
100

RNA velocity of single cells.
Gioele La Manno, Ruslan Soldatov, Amit Zeisel, Emelie Braun, Hannah Hochgerner, Viktor Petukhov, Katja Lidschreiber, Maria E Kastriti, Peter Lönnerberg, Alessandro Furlan,[...]. Nature 2018
883
100

Regulatory sequence analysis tools.
Jacques van Helden. Nucleic Acids Res 2003
341
100

Transcriptional regulation of Nfix by NFIB drives astrocytic maturation within the developing spinal cord.
Elise Matuzelski, Jens Bunt, Danyon Harkins, Jonathan W C Lim, Richard M Gronostajski, Linda J Richards, Lachlan Harris, Michael Piper. Dev Biol 2017
27
100

The physics and biology of animal reflectors.
M F Land. Prog Biophys Mol Biol 1972
244
100

MEF2D drives photoreceptor development through a genome-wide competition for tissue-specific enhancers.
Milena M Andzelm, Timothy J Cherry, David A Harmin, Annabel C Boeke, Charlotte Lee, Martin Hemberg, Basil Pawlyk, Athar N Malik, Steven W Flavell, Michael A Sandberg,[...]. Neuron 2015
46
100

Two transcription factors, Pou4f2 and Isl1, are sufficient to specify the retinal ganglion cell fate.
Fuguo Wu, Tadeusz J Kaczynski, Santhosh Sethuramanujam, Renzhong Li, Varsha Jain, Malcolm Slaughter, Xiuqian Mu. Proc Natl Acad Sci U S A 2015
55
100

A bioengineered retinal pigment epithelial monolayer for advanced, dry age-related macular degeneration.
Amir H Kashani, Jane S Lebkowski, Firas M Rahhal, Robert L Avery, Hani Salehi-Had, Wei Dang, Chih-Min Lin, Debbie Mitra, Danhong Zhu, Biju B Thomas,[...]. Sci Transl Med 2018
146
100

The Ensembl Variant Effect Predictor.
William McLaren, Laurent Gil, Sarah E Hunt, Harpreet Singh Riat, Graham R S Ritchie, Anja Thormann, Paul Flicek, Fiona Cunningham. Genome Biol 2016
100

JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework.
Aziz Khan, Oriol Fornes, Arnaud Stigliani, Marius Gheorghe, Jaime A Castro-Mondragon, Robin van der Lee, Adrien Bessy, Jeanne Chèneby, Shubhada R Kulkarni, Ge Tan,[...]. Nucleic Acids Res 2018
679
100

Sox9 is critical for suppression of neurogenesis but not initiation of gliogenesis in the cerebellum.
Keng Ioi Vong, Crystal Kit Ying Leung, Richard R Behringer, Kin Ming Kwan. Mol Brain 2015
27
100

King-Devick Test identifies real-time concussion and asymptomatic concussion in youth athletes.
Priya S Dhawan, Danielle Leong, Lisa Tapsell, Amaal J Starling, Steven L Galetta, Laura J Balcer, Trenton L Overall, Jennifer S Adler, Rashmi B Halker-Singh, Bert B Vargas,[...]. Neurol Clin Pract 2017
11
100

Imaging intracellular fluorescent proteins at nanometer resolution.
Eric Betzig, George H Patterson, Rachid Sougrat, O Wolf Lindwasser, Scott Olenych, Juan S Bonifacino, Michael W Davidson, Jennifer Lippincott-Schwartz, Harald F Hess. Science 2006
100

ISL1 and BRN3B co-regulate the differentiation of murine retinal ganglion cells.
Ling Pan, Min Deng, Xiaoling Xie, Lin Gan. Development 2008
132
100

The Regenerating Adult Zebrafish Retina Recapitulates Developmental Fate Specification Programs.
Manuela Lahne, Margaret Brecker, Stuart E Jones, David R Hyde. Front Cell Dev Biol 2021
7
100

Lhx2 Is an Essential Factor for Retinal Gliogenesis and Notch Signaling.
Jimmy de Melo, Cristina Zibetti, Brian S Clark, Woochang Hwang, Ana L Miranda-Angulo, Jiang Qian, Seth Blackshaw. J Neurosci 2016
42
100

Multiple intrinsic factors act in concert with Lhx2 to direct retinal gliogenesis.
Jimmy de Melo, Brian S Clark, Seth Blackshaw. Sci Rep 2016
17
100

Identification of alternative topological domains in chromatin.
Darya Filippova, Rob Patro, Geet Duggal, Carl Kingsford. Algorithms Mol Biol 2014
110
100

Turning the fate of reprogramming cells from retinal disorder to regeneration by Pax6 in newts.
Martin Miguel Casco-Robles, Md Rafiqul Islam, Wataru Inami, Hibiki Vincent Tanaka, Ailidana Kunahong, Hirofumi Yasumuro, Shiori Hanzawa, Roman Martin Casco-Robles, Fubito Toyama, Fumiaki Maruo,[...]. Sci Rep 2016
14
100

Enhancer redundancy provides phenotypic robustness in mammalian development.
Marco Osterwalder, Iros Barozzi, Virginie Tissières, Yoko Fukuda-Yuzawa, Brandon J Mannion, Sarah Y Afzal, Elizabeth A Lee, Yiwen Zhu, Ingrid Plajzer-Frick, Catherine S Pickle,[...]. Nature 2018
243
100

High-Spatial-Resolution Multi-Omics Sequencing via Deterministic Barcoding in Tissue.
Yang Liu, Mingyu Yang, Yanxiang Deng, Graham Su, Archibald Enninful, Cindy C Guo, Toma Tebaldi, Di Zhang, Dongjoo Kim, Zhiliang Bai,[...]. Cell 2020
81
100

A Single-Cell Transcriptomic Atlas of Human Neocortical Development during Mid-gestation.
Damon Polioudakis, Luis de la Torre-Ubieta, Justin Langerman, Andrew G Elkins, Xu Shi, Jason L Stein, Celine K Vuong, Susanne Nichterwitz, Melinda Gevorgian, Carli K Opland,[...]. Neuron 2019
121
100

How variable clones build an invariant retina.
Jie He, Gen Zhang, Alexandra D Almeida, Michel Cayouette, Benjamin D Simons, William A Harris. Neuron 2012
141
100


Mapping genome-wide transcription-factor binding sites using DAP-seq.
Anna Bartlett, Ronan C O'Malley, Shao-Shan Carol Huang, Mary Galli, Joseph R Nery, Andrea Gallavotti, Joseph R Ecker. Nat Protoc 2017
115
100


PRC2 Facilitates the Regulatory Topology Required for Poised Enhancer Function during Pluripotent Stem Cell Differentiation.
Sara Cruz-Molina, Patricia Respuela, Christina Tebartz, Petros Kolovos, Milos Nikolic, Raquel Fueyo, Wilfred F J van Ijcken, Frank Grosveld, Peter Frommolt, Hisham Bazzi,[...]. Cell Stem Cell 2017
103
100

A regulatory loop involving PAX6, MITF, and WNT signaling controls retinal pigment epithelium development.
Kapil Bharti, Melanie Gasper, Jingxing Ou, Martha Brucato, Katharina Clore-Gronenborn, James Pickel, Heinz Arnheiter. PLoS Genet 2012
89
100

Nfib Promotes Metastasis through a Widespread Increase in Chromatin Accessibility.
Sarah K Denny, Dian Yang, Chen-Hua Chuang, Jennifer J Brady, Jing Shan Lim, Barbara M Grüner, Shin-Heng Chiou, Alicia N Schep, Jessika Baral, Cécile Hamard,[...]. Cell 2016
184
100

Molecular Anatomy of the Developing Human Retina.
Akina Hoshino, Rinki Ratnapriya, Matthew J Brooks, Vijender Chaitankar, Matthew S Wilken, Chi Zhang, Margaret R Starostik, Linn Gieser, Anna La Torre, Mario Nishio,[...]. Dev Cell 2017
103
100


Single cell transcriptome profiling of retinal ganglion cells identifies cellular subtypes.
Bruce A Rheaume, Amyeo Jereen, Mohan Bolisetty, Muhammad S Sajid, Yue Yang, Kathleen Renna, Lili Sun, Paul Robson, Ephraim F Trakhtenberg. Nat Commun 2018
169
100

A single-cell atlas of chromatin accessibility in the human genome.
Kai Zhang, James D Hocker, Michael Miller, Xiaomeng Hou, Joshua Chiou, Olivier B Poirion, Yunjiang Qiu, Yang E Li, Kyle J Gaulton, Allen Wang,[...]. Cell 2021
4
100

Single-Cell Profiles of Retinal Ganglion Cells Differing in Resilience to Injury Reveal Neuroprotective Genes.
Nicholas M Tran, Karthik Shekhar, Irene E Whitney, Anne Jacobi, Inbal Benhar, Guosong Hong, Wenjun Yan, Xian Adiconis, McKinzie E Arnold, Jung Min Lee,[...]. Neuron 2019
138
100

Optical plasticity of mammalian cells.
Kaushikaram Subramanian, Heike Petzold, Benjamin Seelbinder, Lena Hersemann, Ina Nüsslein, Moritz Kreysing. J Biophotonics 2021
1
100

Up-regulation of miR-325-3p suppresses pineal aralkylamine N-acetyltransferase (Aanat) after neonatal hypoxia-ischemia brain injury in rats.
Yuanyuan Yang, Bin Sun, Jian Huang, Lixiao Xu, Jian Pan, Chen Fang, Mei Li, Gen Li, Yanfang Tao, Xiaofeng Yang,[...]. Brain Res 2017
33
100


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.