A citation-based method for searching scientific literature

Alexandre T Vessoni, Tianpeng Zhang, Annabel Quinet, Ho-Chang Jeong, Michael Munroe, Matthew Wood, Enzo Tedone, Alessandro Vindigni, Jerry W Shay, Roger A Greenberg, Luis F Z Batista. J Cell Biol 2021
Times Cited: 1







List of co-cited articles
articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


LINE drive. retrotransposition and genome instability.
Haig H Kazazian, John L Goodier. Cell 2002
148
100

iPS cells produce viable mice through tetraploid complementation.
Xiao-yang Zhao, Wei Li, Zhuo Lv, Lei Liu, Man Tong, Tang Hai, Jie Hao, Chang-long Guo, Qing-wen Ma, Liu Wang,[...]. Nature 2009
519
100

Conservation and innovation in the DUX4-family gene network.
Jennifer L Whiddon, Ashlee T Langford, Chao-Jen Wong, Jun Wen Zhong, Stephen J Tapscott. Nat Genet 2017
119
100

DNA repair, genome stability, and aging.
David B Lombard, Katrin F Chua, Raul Mostoslavsky, Sonia Franco, Monica Gostissa, Frederick W Alt. Cell 2005
602
100

BRCA1-BARD1 promotes RAD51-mediated homologous DNA pairing.
Weixing Zhao, Justin B Steinfeld, Fengshan Liang, Xiaoyong Chen, David G Maranon, Chu Jian Ma, Youngho Kwon, Timsi Rao, Weibin Wang, Chen Sheng,[...]. Nature 2017
122
100

Tet Enzymes Regulate Telomere Maintenance and Chromosomal Stability of Mouse ESCs.
Jiao Yang, Renpeng Guo, Hua Wang, Xiaoying Ye, Zhongcheng Zhou, Jiameng Dan, Haiying Wang, Peng Gong, Wei Deng, Yu Yin,[...]. Cell Rep 2016
43
100

Deterministic Restriction on Pluripotent State Dissolution by Cell-Cycle Pathways.
Kevin Andrew Uy Gonzales, Hongqing Liang, Yee-Siang Lim, Yun-Shen Chan, Jia-Chi Yeo, Cheng-Peow Tan, Bin Gao, Beilin Le, Zi-Ying Tan, Kok-Yao Low,[...]. Cell 2015
111
100

Primate-specific endogenous retrovirus-driven transcription defines naive-like stem cells.
Jichang Wang, Gangcai Xie, Manvendra Singh, Avazeh T Ghanbarian, Tamás Raskó, Attila Szvetnik, Huiqiang Cai, Daniel Besser, Alessandro Prigione, Nina V Fuchs,[...]. Nature 2014
218
100

DUX-family transcription factors regulate zygotic genome activation in placental mammals.
Alberto De Iaco, Evarist Planet, Andrea Coluccio, Sonia Verp, Julien Duc, Didier Trono. Nat Genet 2017
190
100

Transposable elements have rewired the core regulatory network of human embryonic stem cells.
Galih Kunarso, Na-Yu Chia, Justin Jeyakani, Catalina Hwang, Xinyi Lu, Yun-Shen Chan, Huck-Hui Ng, Guillaume Bourque. Nat Genet 2010
456
100

KAP1 controls endogenous retroviruses in embryonic stem cells.
Helen M Rowe, Johan Jakobsson, Daniel Mesnard, Jacques Rougemont, Séverine Reynard, Tugce Aktas, Pierre V Maillard, Hillary Layard-Liesching, Sonia Verp, Julien Marquis,[...]. Nature 2010
435
100

Tracing the derivation of embryonic stem cells from the inner cell mass by single-cell RNA-Seq analysis.
Fuchou Tang, Catalin Barbacioru, Siqin Bao, Caroline Lee, Ellen Nordman, Xiaohui Wang, Kaiqin Lao, M Azim Surani. Cell Stem Cell 2010
358
100

Alternative lengthening of telomeres: models, mechanisms and implications.
Anthony J Cesare, Roger R Reddel. Nat Rev Genet 2010
562
100

TRF2-independent chromosome end protection during pluripotency.
Phil Ruis, David Van Ly, Valerie Borel, Georgia R Kafer, Afshan McCarthy, Steven Howell, Robert Blassberg, Ambrosius P Snijders, James Briscoe, Kathy K Niakan,[...]. Nature 2021
6
100

Transient Dux expression facilitates nuclear transfer and induced pluripotent stem cell reprogramming.
Lei Yang, Xuefei Liu, Lishuang Song, Anqi Di, Guanghua Su, Chunling Bai, Zhuying Wei, Guangpeng Li. EMBO Rep 2020
7
100

Klf4 reverts developmentally programmed restriction of ground state pluripotency.
Ge Guo, Jian Yang, Jennifer Nichols, John Simon Hall, Isobel Eyres, William Mansfield, Austin Smith. Development 2009
527
100

Telomere length measurements using digital fluorescence microscopy.
S S Poon, U M Martens, R K Ward, P M Lansdorp. Cytometry 1999
156
100

SETDB1 prevents TET2-dependent activation of IAP retroelements in naïve embryonic stem cells.
Özgen Deniz, Lorenzo de la Rica, Kevin C L Cheng, Dominik Spensberger, Miguel R Branco. Genome Biol 2018
16
100

Dynamic regulation of 5-hydroxymethylcytosine in mouse ES cells and during differentiation.
Gabriella Ficz, Miguel R Branco, Stefanie Seisenberger, Fátima Santos, Felix Krueger, Timothy A Hore, C Joana Marques, Simon Andrews, Wolf Reik. Nature 2011
780
100

CNVkit: Genome-Wide Copy Number Detection and Visualization from Targeted DNA Sequencing.
Eric Talevich, A Hunter Shain, Thomas Botton, Boris C Bastian. PLoS Comput Biol 2016
480
100

Mammalian telomeres resemble fragile sites and require TRF1 for efficient replication.
Agnel Sfeir, Settapong T Kosiyatrakul, Dirk Hockemeyer, Sheila L MacRae, Jan Karlseder, Carl L Schildkraut, Titia de Lange. Cell 2009
636
100


TRF2-mediated telomere protection is dispensable in pluripotent stem cells.
Marta Markiewicz-Potoczny, Anastasia Lobanova, Anisha M Loeb, Oktay Kirak, Teresa Olbrich, Sergio Ruiz, Eros Lazzerini Denchi. Nature 2021
7
100

The impact of retrotransposons on human genome evolution.
Richard Cordaux, Mark A Batzer. Nat Rev Genet 2009
921
100

Intrinsic retroviral reactivation in human preimplantation embryos and pluripotent cells.
Edward J Grow, Ryan A Flynn, Shawn L Chavez, Nicholas L Bayless, Mark Wossidlo, Daniel J Wesche, Lance Martin, Carol B Ware, Catherine A Blish, Howard Y Chang,[...]. Nature 2015
262
100

Dynamic stem cell states: naive to primed pluripotency in rodents and humans.
Leehee Weinberger, Muneef Ayyash, Noa Novershtern, Jacob H Hanna. Nat Rev Mol Cell Biol 2016
275
100

Chromatin Accessibility Landscape in Human Early Embryos and Its Association with Evolution.
Lei Gao, Keliang Wu, Zhenbo Liu, Xuelong Yao, Shenli Yuan, Wenrong Tao, Lizhi Yi, Guanling Yu, Zhenzhen Hou, Dongdong Fan,[...]. Cell 2018
66
100

Ex uno plures: molecular designs for embryonic pluripotency.
Kyle M Loh, Bing Lim, Lay Teng Ang. Physiol Rev 2015
17
100

Telomeres acquire embryonic stem cell characteristics in induced pluripotent stem cells.
Rosa M Marion, Katerina Strati, Han Li, Agueda Tejera, Stefan Schoeftner, Sagrario Ortega, Manuel Serrano, Maria A Blasco. Cell Stem Cell 2009
334
100

The retrovirus HERVH is a long noncoding RNA required for human embryonic stem cell identity.
Xinyi Lu, Friedrich Sachs, LeeAnn Ramsay, Pierre-Étienne Jacques, Jonathan Göke, Guillaume Bourque, Huck-Hui Ng. Nat Struct Mol Biol 2014
189
100

Dynamic transcription of distinct classes of endogenous retroviral elements marks specific populations of early human embryonic cells.
Jonathan Göke, Xinyi Lu, Yun-Shen Chan, Huck-Hui Ng, Lam-Ha Ly, Friedrich Sachs, Iwona Szczerbinska. Cell Stem Cell 2015
141
100

An ultra-low-input native ChIP-seq protocol for genome-wide profiling of rare cell populations.
Julie Brind'Amour, Sheng Liu, Matthew Hudson, Carol Chen, Mohammad M Karimi, Matthew C Lorincz. Nat Commun 2015
161
100

Reconstitution of the mouse germ cell specification pathway in culture by pluripotent stem cells.
Katsuhiko Hayashi, Hiroshi Ohta, Kazuki Kurimoto, Shinya Aramaki, Mitinori Saitou. Cell 2011
684
100


The cell cycle in stem cell proliferation, pluripotency and differentiation.
Lijun Liu, Wojciech Michowski, Aleksandra Kolodziejczyk, Piotr Sicinski. Nat Cell Biol 2019
41
100

Feeders facilitate telomere maintenance and chromosomal stability of embryonic stem cells.
Renpeng Guo, Xiaoying Ye, Jiao Yang, Zhongcheng Zhou, Chenglei Tian, Hua Wang, Haiying Wang, Haifeng Fu, Chun Liu, Ming Zeng,[...]. Nat Commun 2018
13
100

LINE-1 activation after fertilization regulates global chromatin accessibility in the early mouse embryo.
Joanna W Jachowicz, Xinyang Bing, Julien Pontabry, Ana Bošković, Oliver J Rando, Maria-Elena Torres-Padilla. Nat Genet 2017
101
100

Intragenic DNA methylation prevents spurious transcription initiation.
Francesco Neri, Stefania Rapelli, Anna Krepelova, Danny Incarnato, Caterina Parlato, Giulia Basile, Mara Maldotti, Francesca Anselmi, Salvatore Oliviero. Nature 2017
262
100

Prolonged Mek1/2 suppression impairs the developmental potential of embryonic stem cells.
Jiho Choi, Aaron J Huebner, Kendell Clement, Ryan M Walsh, Andrej Savol, Kaixuan Lin, Hongcang Gu, Bruno Di Stefano, Justin Brumbaugh, Sang-Yong Kim,[...]. Nature 2017
104
100

Zscan4 regulates telomere elongation and genomic stability in ES cells.
Michal Zalzman, Geppino Falco, Lioudmila V Sharova, Akira Nishiyama, Marshall Thomas, Sung-Lim Lee, Carole A Stagg, Hien G Hoang, Hsih-Te Yang, Fred E Indig,[...]. Nature 2010
239
100

Cooperative Binding of Transcription Factors Orchestrates Reprogramming.
Constantinos Chronis, Petko Fiziev, Bernadett Papp, Stefan Butz, Giancarlo Bonora, Shan Sabri, Jason Ernst, Kathrin Plath. Cell 2017
211
100

Rif1 maintains telomere length homeostasis of ESCs by mediating heterochromatin silencing.
Jiameng Dan, Yifei Liu, Na Liu, Maria Chiourea, Maja Okuka, Tao Wu, Xiaoying Ye, Chunlin Mou, Lei Wang, Lingling Wang,[...]. Dev Cell 2014
61
100

DNA repair in murine embryonic stem cells and differentiated cells.
Elisia D Tichy, Peter J Stambrook. Exp Cell Res 2008
95
100

Germline regulatory element of Oct-4 specific for the totipotent cycle of embryonal cells.
Y I Yeom, G Fuhrmann, C E Ovitt, A Brehm, K Ohbo, M Gross, K Hübner, H R Schöler. Development 1996
662
100

DNA methyltransferases control telomere length and telomere recombination in mammalian cells.
Susana Gonzalo, Isabel Jaco, Mario F Fraga, Taiping Chen, En Li, Manel Esteller, María A Blasco. Nat Cell Biol 2006
418
100

Analysis pipelines for cancer genome sequencing in mice.
Sebastian Lange, Thomas Engleitner, Sebastian Mueller, Roman Maresch, Maximilian Zwiebel, Laura González-Silva, Günter Schneider, Ruby Banerjee, Fengtang Yang, George S Vassiliou,[...]. Nat Protoc 2020
8
100

A LINE1-Nucleolin Partnership Regulates Early Development and ESC Identity.
Michelle Percharde, Chih-Jen Lin, Yafei Yin, Juan Guan, Gabriel A Peixoto, Aydan Bulut-Karslioglu, Steffen Biechele, Bo Huang, Xiaohua Shen, Miguel Ramalho-Santos. Cell 2018
144
100

New cell lines from mouse epiblast share defining features with human embryonic stem cells.
Paul J Tesar, Josh G Chenoweth, Frances A Brook, Timothy J Davies, Edward P Evans, David L Mack, Richard L Gardner, Ronald D G McKay. Nature 2007
100

FGF signaling inhibition in ESCs drives rapid genome-wide demethylation to the epigenetic ground state of pluripotency.
Gabriella Ficz, Timothy A Hore, Fátima Santos, Heather J Lee, Wendy Dean, Julia Arand, Felix Krueger, David Oxley, Yu-Lee Paul, Jörn Walter,[...]. Cell Stem Cell 2013
265
100

Derivation of pluripotent epiblast stem cells from mammalian embryos.
I Gabrielle M Brons, Lucy E Smithers, Matthew W B Trotter, Peter Rugg-Gunn, Bowen Sun, Susana M Chuva de Sousa Lopes, Sarah K Howlett, Amanda Clarkson, Lars Ahrlund-Richter, Roger A Pedersen,[...]. Nature 2007
100


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.