A citation-based method for searching scientific literature

Alex Penev, Andrew Bazley, Michael Shen, Jef D Boeke, Sharon A Savage, Agnel Sfeir. Mol Cell 2021
Times Cited: 2







List of co-cited articles
articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Functional assays for replication protein A (RPA).
Sara K Binz, Anne M Dickson, Stuart J Haring, Marc S Wold. Methods Enzymol 2006
52
50


Aging stem cells. A Werner syndrome stem cell model unveils heterochromatin alterations as a driver of human aging.
Weiqi Zhang, Jingyi Li, Keiichiro Suzuki, Jing Qu, Ping Wang, Junzhi Zhou, Xiaomeng Liu, Ruotong Ren, Xiuling Xu, Alejandro Ocampo,[...]. Science 2015
258
50

Roles for Tbx3 in regulation of two-cell state and telomere elongation in mouse ES cells.
Jiameng Dan, Minshu Li, Jiao Yang, Jiaojiao Li, Maja Okuka, Xiaoying Ye, Lin Liu. Sci Rep 2013
29
50

Genome architecture: domain organization of interphase chromosomes.
Wendy A Bickmore, Bas van Steensel. Cell 2013
438
50


Histone content increases in differentiating embryonic stem cells.
Theodoros Karnavas, Luisa Pintonello, Alessandra Agresti, Marco E Bianchi. Front Physiol 2014
7
50

The heterochromatic chromosome caps in great apes impact telomere metabolism.
Clara Novo, Nausica Arnoult, Win-Yan Bordes, Luis Castro-Vega, Anne Gibaud, Bernard Dutrillaux, Silvia Bacchetti, Arturo Londoño-Vallejo. Nucleic Acids Res 2013
9
50

Tcstv1 and Tcstv3 elongate telomeres of mouse ES cells.
Qian Zhang, Jiameng Dan, Hua Wang, Renpeng Guo, Jian Mao, Haifeng Fu, Xiawei Wei, Lin Liu. Sci Rep 2016
11
50

Modes of phase separation affecting chromatin regulation.
Spiros Palikyras, Argyris Papantonis. Open Biol 2019
17
50

Hyperdynamic plasticity of chromatin proteins in pluripotent embryonic stem cells.
Eran Meshorer, Dhananjay Yellajoshula, Eric George, Peter J Scambler, David T Brown, Tom Misteli. Dev Cell 2006
726
50

Telomere length regulates TERRA levels through increased trimethylation of telomeric H3K9 and HP1α.
Nausica Arnoult, Amandine Van Beneden, Anabelle Decottignies. Nat Struct Mol Biol 2012
151
50

The inner centromere is a biomolecular condensate scaffolded by the chromosomal passenger complex.
Prasad Trivedi, Francesco Palomba, Ewa Niedzialkowska, Michelle A Digman, Enrico Gratton, P Todd Stukenberg. Nat Cell Biol 2019
24
50

Stress-Triggered Phase Separation Is an Adaptive, Evolutionarily Tuned Response.
Joshua A Riback, Christopher D Katanski, Jamie L Kear-Scott, Evgeny V Pilipenko, Alexandra E Rojek, Tobin R Sosnick, D Allan Drummond. Cell 2017
290
50

Biomolecular condensates: organizers of cellular biochemistry.
Salman F Banani, Hyun O Lee, Anthony A Hyman, Michael K Rosen. Nat Rev Mol Cell Biol 2017
50

Human embryonic stem cells have constitutively active Bax at the Golgi and are primed to undergo rapid apoptosis.
Raluca Dumitru, Vivian Gama, B Matthew Fagan, Jacquelyn J Bower, Vijay Swahari, Larysa H Pevny, Mohanish Deshmukh. Mol Cell 2012
102
50

Expression and differential regulation of human TERRA at several chromosome ends.
Marianna Feretzaki, Patricia Renck Nunes, Joachim Lingner. RNA 2019
21
50

Identification of TERRA locus unveils a telomere protection role through association to nearly all chromosomes.
Isabel López de Silanes, Osvaldo Graña, Maria Luigia De Bonis, Orlando Dominguez, David G Pisano, Maria A Blasco. Nat Commun 2014
54
50

Nuclear condensates of the Polycomb protein chromobox 2 (CBX2) assemble through phase separation.
Roubina Tatavosian, Samantha Kent, Kyle Brown, Tingting Yao, Huy Nguyen Duc, Thao Ngoc Huynh, Chao Yu Zhen, Brian Ma, Haobin Wang, Xiaojun Ren. J Biol Chem 2019
113
50

Zscan4: a novel gene expressed exclusively in late 2-cell embryos and embryonic stem cells.
Geppino Falco, Sung-Lim Lee, Ilaria Stanghellini, Uwem C Bassey, Toshio Hamatani, Minoru S H Ko. Dev Biol 2007
149
50

Mammalian telomeres resemble fragile sites and require TRF1 for efficient replication.
Agnel Sfeir, Settapong T Kosiyatrakul, Dirk Hockemeyer, Sheila L MacRae, Jan Karlseder, Carl L Schildkraut, Titia de Lange. Cell 2009
636
50

Telomeres acquire embryonic stem cell characteristics in induced pluripotent stem cells.
Rosa M Marion, Katerina Strati, Han Li, Agueda Tejera, Stefan Schoeftner, Sagrario Ortega, Manuel Serrano, Maria A Blasco. Cell Stem Cell 2009
334
50

Activation of DNA damage response signaling in mouse embryonic stem cells.
Ilya A Chuykin, Maria S Lianguzova, Tatiana V Pospelova, Valery A Pospelov. Cell Cycle 2008
59
50

Protein Phase Separation: A New Phase in Cell Biology.
Steven Boeynaems, Simon Alberti, Nicolas L Fawzi, Tanja Mittag, Magdalini Polymenidou, Frederic Rousseau, Joost Schymkowitz, James Shorter, Benjamin Wolozin, Ludo Van Den Bosch,[...]. Trends Cell Biol 2018
568
50

Biophysical Properties of HP1-Mediated Heterochromatin.
Serena Sanulli, John D Gross, Geeta J Narlikar. Cold Spring Harb Symp Quant Biol 2019
3
50

Transcription Factors Activate Genes through the Phase-Separation Capacity of Their Activation Domains.
Ann Boija, Isaac A Klein, Benjamin R Sabari, Alessandra Dall'Agnese, Eliot L Coffey, Alicia V Zamudio, Charles H Li, Krishna Shrinivas, John C Manteiga, Nancy M Hannett,[...]. Cell 2018
408
50

TERRA RNA binding to TRF2 facilitates heterochromatin formation and ORC recruitment at telomeres.
Zhong Deng, Julie Norseen, Andreas Wiedmer, Harold Riethman, Paul M Lieberman. Mol Cell 2009
345
50

ATRX interacts with H3.3 in maintaining telomere structural integrity in pluripotent embryonic stem cells.
Lee H Wong, James D McGhie, Marcus Sim, Melissa A Anderson, Soyeon Ahn, Ross D Hannan, Amee J George, Kylie A Morgan, Jeffrey R Mann, K H Andy Choo. Genome Res 2010
258
50

TERRA RNA Antagonizes ATRX and Protects Telomeres.
Hsueh-Ping Chu, Catherine Cifuentes-Rojas, Barry Kesner, Eric Aeby, Hun-Goo Lee, Chunyao Wei, Hyun Jung Oh, Myriam Boukhali, Wilhelm Haas, Jeannie T Lee. Cell 2017
99
50

High mitochondrial priming sensitizes hESCs to DNA-damage-induced apoptosis.
Julia C Liu, Xiao Guan, Jeremy A Ryan, Ana G Rivera, Caroline Mock, Vishesh Agrawal, Anthony Letai, Paul H Lerou, Galit Lahav. Cell Stem Cell 2013
91
50

Cell cycle adaptations and maintenance of genomic integrity in embryonic stem cells and induced pluripotent stem cells.
Olga Momčilović, Christopher Navara, Gerald Schatten. Results Probl Cell Differ 2011
18
50

The Daxx/Atrx Complex Protects Tandem Repetitive Elements during DNA Hypomethylation by Promoting H3K9 Trimethylation.
Quanyuan He, Hyeung Kim, Rui Huang, Weisi Lu, Mengfan Tang, Fengtao Shi, Dong Yang, Xiya Zhang, Junjiu Huang, Dan Liu,[...]. Cell Stem Cell 2015
63
50


Global chromatin compaction limits the strength of the DNA damage response.
Matilde Murga, Isabel Jaco, Yuhong Fan, Rebeca Soria, Barbara Martinez-Pastor, Myriam Cuadrado, Seung-Min Yang, Maria A Blasco, Arthur I Skoultchi, Oscar Fernandez-Capetillo. J Cell Biol 2007
179
50

Spatiotemporal analysis with a genetically encoded fluorescent RNA probe reveals TERRA function around telomeres.
Toshimichi Yamada, Hideaki Yoshimura, Rintaro Shimada, Mitsuru Hattori, Masatoshi Eguchi, Takahiro K Fujiwara, Akihiro Kusumi, Takeaki Ozawa. Sci Rep 2016
17
50

Chromatin signatures of pluripotent cell lines.
Véronique Azuara, Pascale Perry, Stephan Sauer, Mikhail Spivakov, Helle F Jørgensen, Rosalind M John, Mina Gouti, Miguel Casanova, Gary Warnes, Matthias Merkenschlager,[...]. Nat Cell Biol 2006
930
50

DNA repair in murine embryonic stem cells and differentiated cells.
Elisia D Tichy, Peter J Stambrook. Exp Cell Res 2008
95
50

53BP1 promotes non-homologous end joining of telomeres by increasing chromatin mobility.
Nadya Dimitrova, Yi-Chun M Chen, David L Spector, Titia de Lange. Nature 2008
400
50

Liquid droplet formation by HP1α suggests a role for phase separation in heterochromatin.
Adam G Larson, Daniel Elnatan, Madeline M Keenen, Michael J Trnka, Jonathan B Johnston, Alma L Burlingame, David A Agard, Sy Redding, Geeta J Narlikar. Nature 2017
619
50

Histone H3.3 incorporation provides a unique and functionally essential telomeric chromatin in embryonic stem cells.
Lee H Wong, Hua Ren, Evan Williams, James McGhie, Soyeon Ahn, Marcus Sim, Angela Tam, Elizabeth Earle, Melissa A Anderson, Jeffrey Mann,[...]. Genome Res 2009
112
50

Phase-separation mechanism for C-terminal hyperphosphorylation of RNA polymerase II.
Huasong Lu, Dan Yu, Anders S Hansen, Sourav Ganguly, Rongdiao Liu, Alec Heckert, Xavier Darzacq, Qiang Zhou. Nature 2018
199
50



Inhibition of pluripotency networks by the Rb tumor suppressor restricts reprogramming and tumorigenesis.
Michael S Kareta, Laura L Gorges, Sana Hafeez, Bérénice A Benayoun, Samuele Marro, Anne-Flore Zmoos, Matthew J Cecchini, Damek Spacek, Luis F Z Batista, Megan O'Brien,[...]. Cell Stem Cell 2015
104
50

Live-cell imaging reveals the dynamics and function of single-telomere TERRA molecules in cancer cells.
Laura Avogaro, Emmanuelle Querido, Myriam Dalachi, Michael F Jantsch, Pascal Chartrand, Emilio Cusanelli. RNA Biol 2018
11
50

Regulation of Transmembrane Signaling by Phase Separation.
Lindsay B Case, Jonathon A Ditlev, Michael K Rosen. Annu Rev Biophys 2019
56
50

Explanation for excessive DNA single-strand breaks and endogenous repair foci in pluripotent mouse embryonic stem cells.
J P Banáth, C A Bañuelos, D Klokov, S M MacPhail, P M Lansdorp, P L Olive. Exp Cell Res 2009
63
50

Mediator and RNA polymerase II clusters associate in transcription-dependent condensates.
Won-Ki Cho, Jan-Hendrik Spille, Micca Hecht, Choongman Lee, Charles Li, Valentin Grube, Ibrahim I Cisse. Science 2018
386
50

mRNA structure determines specificity of a polyQ-driven phase separation.
Erin M Langdon, Yupeng Qiu, Amirhossein Ghanbari Niaki, Grace A McLaughlin, Chase A Weidmann, Therese M Gerbich, Jean A Smith, John M Crutchley, Christina M Termini, Kevin M Weeks,[...]. Science 2018
199
50

Chromatin regulatory mechanisms in pluripotency.
Julie A Lessard, Gerald R Crabtree. Annu Rev Cell Dev Biol 2010
124
50


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.