A citation-based method for searching scientific literature

Matthew P Russon, Kirsten M Westerhouse, Elizabeth J Tran. Biol Chem 2020
Times Cited: 2







List of co-cited articles
articles co-cited >1



Times Cited
  Times     Co-cited
Similarity



The DHX36-specific-motif (DSM) enhances specificity by accelerating recruitment of DNA G-quadruplex structures.
Bruce Chang-Gu, Devin Bradburn, Philip M Yangyuoru, Rick Russell. Biol Chem 2020
1
100

Regulation of RNA helicase activity: principles and examples.
Pascal Donsbach, Dagmar Klostermeier. Biol Chem 2021
2
50

Regulation of DEAH-box RNA helicases by G-patch proteins.
Katherine E Bohnsack, Ralf Ficner, Markus T Bohnsack, Stefanie Jonas. Biol Chem 2021
8
50


Mtr4 RNA helicase structures and interactions.
Keith J Olsen, Sean J Johnson. Biol Chem 2021
4
50



Targeting host DEAD-box RNA helicase DDX3X for treating viral infections.
Paul T Winnard, Farhad Vesuna, Venu Raman. Antiviral Res 2021
5
50

Reactome pathway analysis: a high-performance in-memory approach.
Antonio Fabregat, Konstantinos Sidiropoulos, Guilherme Viteri, Oscar Forner, Pablo Marin-Garcia, Vicente Arnau, Peter D'Eustachio, Lincoln Stein, Henning Hermjakob. BMC Bioinformatics 2017
237
50

Discovery of G-quadruplex-forming sequences in SARS-CoV-2.
Danyang Ji, Mario Juhas, Chi Man Tsang, Chun Kit Kwok, Yongshu Li, Yang Zhang. Brief Bioinform 2021
31
50


Global analysis of protein-RNA interactions in SARS-CoV-2-infected cells reveals key regulators of infection.
Wael Kamel, Marko Noerenberg, Berati Cerikan, Honglin Chen, Aino I Järvelin, Mohamed Kammoun, Jeffrey Y Lee, Ni Shuai, Manuel Garcia-Moreno, Anna Andrejeva,[...]. Mol Cell 2021
29
50

The reactome pathway knowledgebase.
Bijay Jassal, Lisa Matthews, Guilherme Viteri, Chuqiao Gong, Pascual Lorente, Antonio Fabregat, Konstantinos Sidiropoulos, Justin Cook, Marc Gillespie, Robin Haw,[...]. Nucleic Acids Res 2020
863
50

DEAD-box protein DDX3 associates with eIF4F to promote translation of selected mRNAs.
Ricardo Soto-Rifo, Paulina S Rubilar, Taran Limousin, Sylvain de Breyne, Didier Décimo, Théophile Ohlmann. EMBO J 2012
167
50

Critical roles of RNA helicase DDX3 and its interactions with eIF4E/PABP1 in stress granule assembly and stress response.
Jing-Wen Shih, Wei-Ting Wang, Tsung-Yuan Tsai, Chu-Yun Kuo, Hao-Kang Li, Yan-Hwa Wu Lee. Biochem J 2012
118
50

Host-Directed Antiviral Therapy.
Naveen Kumar, Shalini Sharma, Ram Kumar, Bhupendra N Tripathi, Sanjay Barua, Hinh Ly, Barry T Rouse. Clin Microbiol Rev 2020
36
50

Analysis of NRAS RNA G-quadruplex binding proteins reveals DDX3X as a novel interactor of cellular G-quadruplex containing transcripts.
Barbara Herdy, Clemens Mayer, Dhaval Varshney, Giovanni Marsico, Pierre Murat, Chris Taylor, Clive D'Santos, David Tannahill, Shankar Balasubramanian. Nucleic Acids Res 2018
62
50

STRING v11: protein-protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets.
Damian Szklarczyk, Annika L Gable, David Lyon, Alexander Junge, Stefan Wyder, Jaime Huerta-Cepas, Milan Simonovic, Nadezhda T Doncheva, John H Morris, Peer Bork,[...]. Nucleic Acids Res 2019
50

The DEAD-box helicase DDX3 supports the assembly of functional 80S ribosomes.
Rene Geissler, Ralph P Golbik, Sven-Erik Behrens. Nucleic Acids Res 2012
57
50

VMD: visual molecular dynamics.
W Humphrey, A Dalke, K Schulten. J Mol Graph 1996
50

Targeting mitochondrial translation by inhibiting DDX3: a novel radiosensitization strategy for cancer treatment.
M R Heerma van Voss, F Vesuna, G M Bol, J Afzal, S Tantravedi, Y Bergman, K Kammers, M Lehar, R Malek, M Ballew,[...]. Oncogene 2018
33
50

A SARS-CoV-2-Human Protein-Protein Interaction Map Reveals Drug Targets and Potential Drug-Repurposing.
David E Gordon, Gwendolyn M Jang, Mehdi Bouhaddou, Jiewei Xu, Kirsten Obernier, Matthew J O'Meara, Jeffrey Z Guo, Danielle L Swaney, Tia A Tummino, Ruth Hüttenhain,[...]. bioRxiv 2020
155
50

RK-33 Radiosensitizes Prostate Cancer Cells by Blocking the RNA Helicase DDX3.
Min Xie, Farhad Vesuna, Saritha Tantravedi, Guus M Bol, Marise R Heerma van Voss, Katriana Nugent, Reem Malek, Kathleen Gabrielson, Paul J van Diest, Phuoc T Tran,[...]. Cancer Res 2016
35
50

Host DDX Helicases as Possible SARS-CoV-2 Proviral Factors: A Structural Overview of Their Hijacking Through Multiple Viral Proteins.
Flavia Squeglia, Maria Romano, Alessia Ruggiero, Giovanni Maga, Rita Berisio. Front Chem 2020
9
50

N-terminal domain of SARS CoV-2 spike protein mutation associated reduction in effectivity of neutralizing antibody with vaccinated individuals.
Yogendra Singh, Neeraj Kumar Fuloria, Shivkanya Fuloria, Vetriselvan Subramaniyan, Dhanalekshmi Unnikrishnan Meenakshi, Srikumar Chakravarthi, Usha Kumari, Navneet Joshi, Gaurav Gupta. J Med Virol 2021
5
50


Two Detailed Plaque Assay Protocols for the Quantification of Infectious SARS-CoV-2.
Emelissa J Mendoza, Kathy Manguiat, Heidi Wood, Michael Drebot. Curr Protoc Microbiol 2020
69
50

Remdesivir against COVID-19 and Other Viral Diseases.
Jakob J Malin, Isabelle Suárez, Vanessa Priesner, Gerd Fätkenheuer, Jan Rybniker. Clin Microbiol Rev 2020
76
50

Waning of BNT162b2 Vaccine Protection against SARS-CoV-2 Infection in Qatar.
Hiam Chemaitelly, Patrick Tang, Mohammad R Hasan, Sawsan AlMukdad, Hadi M Yassine, Fatiha M Benslimane, Hebah A Al Khatib, Peter Coyle, Houssein H Ayoub, Zaina Al Kanaani,[...]. N Engl J Med 2021
153
50


The role of the DEAD-box RNA helicase DDX3 in mRNA metabolism.
Ricardo Soto-Rifo, Théophile Ohlmann. Wiley Interdiscip Rev RNA 2013
69
50

COVID-19, SARS and MERS: are they closely related?
N Petrosillo, G Viceconte, O Ergonul, G Ippolito, E Petersen. Clin Microbiol Infect 2020
492
50

DDX3X inhibitors, an effective way to overcome HIV-1 resistance targeting host proteins.
Annalaura Brai, Valentina Riva, Francesco Saladini, Claudio Zamperini, Claudia Immacolata Trivisani, Anna Garbelli, Carla Pennisi, Alessia Giannini, Adele Boccuto, Francesca Bugli,[...]. Eur J Med Chem 2020
9
50

RK-33 Is a Broad-Spectrum Antiviral Agent That Targets DEAD-Box RNA Helicase DDX3X.
Sundy N Y Yang, Sarah C Atkinson, Michelle D Audsley, Steven M Heaton, David A Jans, Natalie A Borg. Cells 2020
12
50

SARS coronavirus nsp1 protein induces template-dependent endonucleolytic cleavage of mRNAs: viral mRNAs are resistant to nsp1-induced RNA cleavage.
Cheng Huang, Kumari G Lokugamage, Janet M Rozovics, Krishna Narayanan, Bert L Semler, Shinji Makino. PLoS Pathog 2011
195
50

Assessment of plaque assay methods for alphaviruses.
Diana Juarez, Kanya C Long, Patricia Aguilar, Tadeusz J Kochel, Eric S Halsey. J Virol Methods 2013
20
50

DDX3X Helicase Inhibitors as a New Strategy To Fight the West Nile Virus Infection.
Annalaura Brai, Francesco Martelli, Valentina Riva, Anna Garbelli, Roberta Fazi, Claudio Zamperini, Alessandro Pollutri, Lucia Falsitta, Stefania Ronzini, Laura Maccari,[...]. J Med Chem 2019
24
50

Statistical inference from multiple iTRAQ experiments without using common reference standards.
Shelley M Herbrich, Robert N Cole, Keith P West, Kerry Schulze, James D Yager, John D Groopman, Parul Christian, Lee Wu, Robert N O'Meally, Damon H May,[...]. J Proteome Res 2013
86
50

Folding non-homologous proteins by coupling deep-learning contact maps with I-TASSER assembly simulations.
Wei Zheng, Chengxin Zhang, Yang Li, Robin Pearce, Eric W Bell, Yang Zhang. Cell Rep Methods 2021
15
50

Targeting transcriptional regulation of SARS-CoV-2 entry factors ACE2 and TMPRSS2.
Yuanyuan Qiao, Xiao-Ming Wang, Rahul Mannan, Sethuramasundaram Pitchiaya, Yuping Zhang, Jesse W Wotring, Lanbo Xiao, Dan R Robinson, Yi-Mi Wu, Jean Ching-Yi Tien,[...]. Proc Natl Acad Sci U S A 2020
63
50

Waning Immunity after the BNT162b2 Vaccine in Israel.
Yair Goldberg, Micha Mandel, Yinon M Bar-On, Omri Bodenheimer, Laurence Freedman, Eric J Haas, Ron Milo, Sharon Alroy-Preis, Nachman Ash, Amit Huppert. N Engl J Med 2021
152
50

DDX3 inhibitors show antiviral activity against positive-sense single-stranded RNA viruses but not against negative-sense single-stranded RNA viruses: The coxsackie B model.
Paola Quaranta, Giulia Lottini, Giulia Chesi, Flavia Contrafatto, Roberta Russotto, Lisa Macera, Michele Lai, Pietro Giorgio Spezia, Annalaura Brai, Maurizio Botta,[...]. Antiviral Res 2020
4
50

Comparison of Time to Clinical Improvement With vs Without Remdesivir Treatment in Hospitalized Patients With COVID-19.
Brian T Garibaldi, Kunbo Wang, Matthew L Robinson, Scott L Zeger, Karen Bandeen-Roche, Mei-Cheng Wang, G Caleb Alexander, Amita Gupta, Robert Bollinger, Yanxun Xu. JAMA Netw Open 2021
30
50

Comparative host-coronavirus protein interaction networks reveal pan-viral disease mechanisms.
David E Gordon, Joseph Hiatt, Mehdi Bouhaddou, Veronica V Rezelj, Svenja Ulferts, Hannes Braberg, Alexander S Jureka, Kirsten Obernier, Jeffrey Z Guo, Jyoti Batra,[...]. Science 2020
250
50

Remdesivir for the Treatment of Covid-19 - Final Report.
John H Beigel, Kay M Tomashek, Lori E Dodd, Aneesh K Mehta, Barry S Zingman, Andre C Kalil, Elizabeth Hohmann, Helen Y Chu, Annie Luetkemeyer, Susan Kline,[...]. N Engl J Med 2020
50

Novel, Broad Spectrum Anti-Cancer Agents Containing the Tricyclic 5:7:5-Fused Diimidazodiazepine Ring System.
Atul Kondaskar, Shilpi Kondaskar, Raj Kumar, James C Fishbein, Nidal Muvarak, Rena G Lapidus, Mariola Sadowska, Martin J Edelman, Guus M Bol, Farhad Vesuna,[...]. ACS Med Chem Lett 2010
34
50


The structure and functions of coronavirus genomic 3' and 5' ends.
Dong Yang, Julian L Leibowitz. Virus Res 2015
186
50

Effect of Remdesivir vs Standard Care on Clinical Status at 11 Days in Patients With Moderate COVID-19: A Randomized Clinical Trial.
Christoph D Spinner, Robert L Gottlieb, Gerard J Criner, José Ramón Arribas López, Anna Maria Cattelan, Alex Soriano Viladomiu, Onyema Ogbuagu, Prashant Malhotra, Kathleen M Mullane, Antonella Castagna,[...]. JAMA 2020
541
50


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.