A citation-based method for searching scientific literature

Nigel S Michki, Ye Li, Kayvon Sanjasaz, Yimeng Zhao, Fred Y Shen, Logan A Walker, Wenjia Cao, Cheng-Yu Lee, Dawen Cai. Cell Rep 2021
Times Cited: 2







List of co-cited articles
articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Cell adhesion molecules: signalling functions at the synapse.
Matthew B Dalva, Andrew C McClelland, Matthew S Kayser. Nat Rev Neurosci 2007
391
50

Deep homology and the origins of evolutionary novelty.
Neil Shubin, Cliff Tabin, Sean Carroll. Nature 2009
383
50

Enhancing droplet-based single-nucleus RNA-seq resolution using the semi-supervised machine learning classifier DIEM.
Marcus Alvarez, Elior Rahmani, Brandon Jew, Kristina M Garske, Zong Miao, Jihane N Benhammou, Chun Jimmie Ye, Joseph R Pisegna, Kirsi H Pietiläinen, Eran Halperin,[...]. Sci Rep 2020
11
50

Wiring economy and volume exclusion determine neuronal placement in the Drosophila brain.
Marta Rivera-Alba, Shiv N Vitaladevuni, Yuriy Mishchenko, Zhiyuan Lu, Shin-Ya Takemura, Lou Scheffer, Ian A Meinertzhagen, Dmitri B Chklovskii, Gonzalo G de Polavieja. Curr Biol 2011
99
50

Identification of genomic enhancers through spatial integration of single-cell transcriptomics and epigenomics.
Carmen Bravo González-Blas, Xiao-Jiang Quan, Ramon Duran-Romaña, Ibrahim Ihsan Taskiran, Duygu Koldere, Kristofer Davie, Valerie Christiaens, Samira Makhzami, Gert Hulselmans, Maxime de Waegeneer,[...]. Mol Syst Biol 2020
15
50

Control of Synaptic Specificity by Establishing a Relative Preference for Synaptic Partners.
Chundi Xu, Emma Theisen, Ryan Maloney, Jing Peng, Ivan Santiago, Clarence Yapp, Zachary Werkhoven, Elijah Rumbaut, Bryan Shum, Dorota Tarnogorska,[...]. Neuron 2019
15
50

Transcriptional Programs of Circuit Assembly in the Drosophila Visual System.
Yerbol Z Kurmangaliyev, Juyoun Yoo, Javier Valdes-Aleman, Piero Sanfilippo, S Lawrence Zipursky. Neuron 2020
13
50


Foxg1 suppresses early cortical cell fate.
Carina Hanashima, Suzanne C Li, Lijian Shen, Eseng Lai, Gord Fishell. Science 2004
269
50

Common temporal identity factors regulate neuronal diversity in fly ventral nerve cord and mouse retina.
Nikolaos Konstantinides, Anthony M Rossi, Claude Desplan. Neuron 2015
12
50

A Single-Cell Transcriptome Atlas of the Aging Drosophila Brain.
Kristofer Davie, Jasper Janssens, Duygu Koldere, Maxime De Waegeneer, Uli Pech, Łukasz Kreft, Sara Aibar, Samira Makhzami, Valerie Christiaens, Carmen Bravo González-Blas,[...]. Cell 2018
230
50

Foxg1 coordinates the switch from nonradially to radially migrating glutamatergic subtypes in the neocortex through spatiotemporal repression.
Takuma Kumamoto, Ken-ichi Toma, Gunadi, William L McKenna, Takeya Kasukawa, Sol Katzman, Bin Chen, Carina Hanashima. Cell Rep 2013
55
50


Neuro-evo-devo in the single cell sequencing era.
Nikos Konstantinides, Sophie Degabriel, Claude Desplan. Curr Opin Syst Biol 2018
3
50

A benchmark of batch-effect correction methods for single-cell RNA sequencing data.
Hoa Thi Nhu Tran, Kok Siong Ang, Marion Chevrier, Xiaomeng Zhang, Nicole Yee Shin Lee, Michelle Goh, Jinmiao Chen. Genome Biol 2020
149
50

Spatial regulation of an E3 ubiquitin ligase directs selective synapse elimination.
Mei Ding, Dan Chao, George Wang, Kang Shen. Science 2007
80
50

Visual projection neurons in the Drosophila lobula link feature detection to distinct behavioral programs.
Ming Wu, Aljoscha Nern, W Ryan Williamson, Mai M Morimoto, Michael B Reiser, Gwyneth M Card, Gerald M Rubin. Elife 2016
98
50


Phenotypic Convergence: Distinct Transcription Factors Regulate Common Terminal Features.
Nikolaos Konstantinides, Katarina Kapuralin, Chaimaa Fadil, Luendreo Barboza, Rahul Satija, Claude Desplan. Cell 2018
73
50



Activity regulates brain development in the fly.
Orkun Akin, S Lawrence Zipursky. Curr Opin Genet Dev 2020
6
50

Integration of temporal and spatial patterning generates neural diversity.
Ted Erclik, Xin Li, Maximilien Courgeon, Claire Bertet, Zhenqing Chen, Ryan Baumert, June Ng, Clara Koo, Urfa Arain, Rudy Behnia,[...]. Nature 2017
59
50

Neuronal identity control by terminal selectors in worms, flies, and chordates.
Oliver Hobert, Paschalis Kratsios. Curr Opin Neurobiol 2019
41
50

Cell-type-Specific Patterned Stimulus-Independent Neuronal Activity in the Drosophila Visual System during Synapse Formation.
Orkun Akin, Bryce T Bajar, Mehmet F Keles, Mark A Frye, S Lawrence Zipursky. Neuron 2019
17
50

From Louvain to Leiden: guaranteeing well-connected communities.
V A Traag, L Waltman, N J van Eck. Sci Rep 2019
300
50

Neuron-Subtype-Specific Expression, Interaction Affinities, and Specificity Determinants of DIP/Dpr Cell Recognition Proteins.
Filip Cosmanescu, Phinikoula S Katsamba, Alina P Sergeeva, Goran Ahlsen, Saurabh D Patel, Joshua J Brewer, Liming Tan, Shuwa Xu, Qi Xiao, Sonal Nagarkar-Jaiswal,[...]. Neuron 2018
29
50

Comparisons between the ON- and OFF-edge motion pathways in the Drosophila brain.
Kazunori Shinomiya, Gary Huang, Zhiyuan Lu, Toufiq Parag, C Shan Xu, Roxanne Aniceto, Namra Ansari, Natasha Cheatham, Shirley Lauchie, Erika Neace,[...]. Elife 2019
36
50

Modular transcriptional programs separately define axon and dendrite connectivity.
Yerbol Z Kurmangaliyev, Juyoun Yoo, Samuel A LoCascio, S Lawrence Zipursky. Elife 2019
14
50

A conserved regulatory logic controls temporal identity in mouse neural progenitors.
Pierre Mattar, Johan Ericson, Seth Blackshaw, Michel Cayouette. Neuron 2015
71
50

A comparison of single-cell trajectory inference methods.
Wouter Saelens, Robrecht Cannoodt, Helena Todorov, Yvan Saeys. Nat Biotechnol 2019
319
50


PARC: ultrafast and accurate clustering of phenotypic data of millions of single cells.
Shobana V Stassen, Dickson M D Siu, Kelvin C M Lee, Joshua W K Ho, Hayden K H So, Kevin K Tsia. Bioinformatics 2020
12
50


A visual motion detection circuit suggested by Drosophila connectomics.
Shin-ya Takemura, Arjun Bharioke, Zhiyuan Lu, Aljoscha Nern, Shiv Vitaladevuni, Patricia K Rivlin, William T Katz, Donald J Olbris, Stephen M Plaza, Philip Winston,[...]. Nature 2013
339
50


Benchmarking single cell RNA-sequencing analysis pipelines using mixture control experiments.
Luyi Tian, Xueyi Dong, Saskia Freytag, Kim-Anh Lê Cao, Shian Su, Abolfazl JalalAbadi, Daniela Amann-Zalcenstein, Tom S Weber, Azadeh Seidi, Jafar S Jabbari,[...]. Nat Methods 2019
89
50

Simultaneous single-cell profiling of lineages and cell types in the vertebrate brain.
Bushra Raj, Daniel E Wagner, Aaron McKenna, Shristi Pandey, Allon M Klein, Jay Shendure, James A Gagnon, Alexander F Schier. Nat Biotechnol 2018
234
50

Fossils, genes and the evolution of animal limbs.
N Shubin, C Tabin, S Carroll. Nature 1997
416
50

Neuronal specification in space and time.
Isabel Holguera, Claude Desplan. Science 2018
57
50


Proneural factors Ascl1 and Neurog2 contribute to neuronal subtype identities by establishing distinct chromatin landscapes.
Begüm Aydin, Akshay Kakumanu, Mary Rossillo, Mireia Moreno-Estellés, Görkem Garipler, Niels Ringstad, Nuria Flames, Shaun Mahony, Esteban O Mazzoni. Nat Neurosci 2019
30
50

Single-Cell Transcriptomes Reveal Diverse Regulatory Strategies for Olfactory Receptor Expression and Axon Targeting.
Hongjie Li, Tongchao Li, Felix Horns, Jiefu Li, Qijing Xie, Chuanyun Xu, Bing Wu, Justus M Kebschull, Colleen N McLaughlin, Sai Saroja Kolluru,[...]. Curr Biol 2020
11
50

Serial Synapse Formation through Filopodial Competition for Synaptic Seeding Factors.
M Neset Özel, Abhishek Kulkarni, Amr Hasan, Josephine Brummer, Marian Moldenhauer, Ilsa-Maria Daumann, Heike Wolfenberg, Vincent J Dercksen, F Ridvan Kiral, Martin Weiser,[...]. Dev Cell 2019
12
50

Ig Superfamily Ligand and Receptor Pairs Expressed in Synaptic Partners in Drosophila.
Liming Tan, Kelvin Xi Zhang, Matthew Y Pecot, Sonal Nagarkar-Jaiswal, Pei-Tseng Lee, Shin-Ya Takemura, Jason M McEwen, Aljoscha Nern, Shuwa Xu, Wael Tadros,[...]. Cell 2015
88
50

Comparative Connectomics Reveals How Partner Identity, Location, and Activity Specify Synaptic Connectivity in Drosophila.
Javier Valdes-Aleman, Richard D Fetter, Emily C Sales, Emily L Heckman, Lalanti Venkatasubramanian, Chris Q Doe, Matthias Landgraf, Albert Cardona, Marta Zlatic. Neuron 2021
8
50

A survey of 6,300 genomic fragments for cis-regulatory activity in the imaginal discs of Drosophila melanogaster.
Aurélie Jory, Carlos Estella, Matt W Giorgianni, Matthew Slattery, Todd R Laverty, Gerald M Rubin, Richard S Mann. Cell Rep 2012
79
50

Decontamination of ambient RNA in single-cell RNA-seq with DecontX.
Shiyi Yang, Sean E Corbett, Yusuke Koga, Zhe Wang, W Evan Johnson, Masanao Yajima, Joshua D Campbell. Genome Biol 2020
27
50

Ikaros confers early temporal competence to mouse retinal progenitor cells.
Jimmy Elliott, Christine Jolicoeur, Vasanth Ramamurthy, Michel Cayouette. Neuron 2008
126
50

Temporal progression of Drosophila medulla neuroblasts generates the transcription factor combination to control T1 neuron morphogenesis.
Vamsikrishna G Naidu, Yu Zhang, Scott Lowe, Alokananda Ray, Hailun Zhu, Xin Li. Dev Biol 2020
4
50


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.