A citation-based method for searching scientific literature

Hans O Kalkman, Martin Hersberger, Suzanne Walitza, Gregor E Berger. Int J Mol Sci 2021
Times Cited: 2







List of co-cited articles
articles co-cited >1



Times Cited
  Times     Co-cited
Similarity



Comparative analysis reveals unexpected genome features of newly isolated Thraustochytrids strains: on ecological function and PUFAs biosynthesis.
Zhiquan Song, Jason E Stajich, Yunxuan Xie, Xianhua Liu, Yaodong He, Jinfeng Chen, Glenn R Hicks, Guangyi Wang. BMC Genomics 2018
11
50

Dynamic flux balance analysis of biomass and lipid production by Antarctic thraustochytrid Oblongichytrium sp. RT2316-13.
Carolina Shene, Paris Paredes, Liset Flores, Allison Leyton, Juan A Asenjo, Yusuf Chisti. Biotechnol Bioeng 2020
4
50



Gene finding in novel genomes.
Ian Korf. BMC Bioinformatics 2004
50

Increase of eicosapentaenoic acid in thraustochytrids through thraustochytrid ubiquitin promoter-driven expression of a fatty acid {delta}5 desaturase gene.
Takumi Kobayashi, Keishi Sakaguchi, Takanori Matsuda, Eriko Abe, Yoichiro Hama, Masahiro Hayashi, Daiske Honda, Yuji Okita, Shinichi Sugimoto, Nozomu Okino,[...]. Appl Environ Microbiol 2011
24
50

A novel hybrid gene prediction method employing protein multiple sequence alignments.
Oliver Keller, Martin Kollmar, Mario Stanke, Stephan Waack. Bioinformatics 2011
222
50

Fast gapped-read alignment with Bowtie 2.
Ben Langmead, Steven L Salzberg. Nat Methods 2012
50

CD-Search: protein domain annotations on the fly.
Aron Marchler-Bauer, Stephen H Bryant. Nucleic Acids Res 2004
50


Phylogeny.fr: robust phylogenetic analysis for the non-specialist.
A Dereeper, V Guignon, G Blanc, S Audic, S Buffet, F Chevenet, J-F Dufayard, S Guindon, V Lefort, M Lescot,[...]. Nucleic Acids Res 2008
50

Genome Sequencing and Analysis of Thraustochytriidae sp. SZU445 Provides Novel Insights into the Polyunsaturated Fatty Acid Biosynthesis Pathway.
Xingyu Zhu, Shuangfei Li, Liangxu Liu, Siting Li, Yanqing Luo, Chuhan Lv, Boyu Wang, Christopher H K Cheng, Huapu Chen, Xuewei Yang. Mar Drugs 2020
6
50


Emerging Mechanisms of Cardiovascular Protection for the Omega-3 Fatty Acid Eicosapentaenoic Acid.
R Preston Mason, Peter Libby, Deepak L Bhatt. Arterioscler Thromb Vasc Biol 2020
78
50

ABySS 2.0: resource-efficient assembly of large genomes using a Bloom filter.
Shaun D Jackman, Benjamin P Vandervalk, Hamid Mohamadi, Justin Chu, Sarah Yeo, S Austin Hammond, Golnaz Jahesh, Hamza Khan, Lauren Coombe, Rene L Warren,[...]. Genome Res 2017
209
50

Illustrating and Enhancing the Biosynthesis of Astaxanthin and Docosahexaenoic Acid in Aurantiochytrium sp. SK4.
Jingrun Ye, Mengmeng Liu, Mingxia He, Ying Ye, Junchao Huang. Mar Drugs 2019
16
50

Taxonomy, ecology and biotechnological applications of thraustochytrids: A review.
Loris Fossier Marchan, Kim J Lee Chang, Peter D Nichols, Wilfrid J Mitchell, Jane L Polglase, Tony Gutierrez. Biotechnol Adv 2018
41
50

Bioactivity and protective effects of natural carotenoids.
Wilhelm Stahl, Helmut Sies. Biochim Biophys Acta 2005
317
50


RNAmmer: consistent and rapid annotation of ribosomal RNA genes.
Karin Lagesen, Peter Hallin, Einar Andreas Rødland, Hans-Henrik Staerfeldt, Torbjørn Rognes, David W Ussery. Nucleic Acids Res 2007
50

Cloning of the astaxanthin synthase gene from Xanthophyllomyces dendrorhous (Phaffia rhodozyma) and its assignment as a beta-carotene 3-hydroxylase/4-ketolase.
Kazuyuki Ojima, Jürgen Breitenbach, Hans Visser, Yutaka Setoguchi, Kazuyuki Tabata, Tatsuo Hoshino, Johan van den Berg, Gerhard Sandmann. Mol Genet Genomics 2006
80
50

Odd-chain polyunsaturated fatty acids in thraustochytrids.
Kim Jye Lee Chang, Maged P Mansour, Graeme A Dunstan, Susan I Blackburn, Anthony Koutoulis, Peter D Nichols. Phytochemistry 2011
19
50


Enhanced production of carotenoids using a Thraustochytrid microalgal strain containing high levels of docosahexaenoic acid-rich oil.
Hansung Park, Minsoo Kwak, JeongWoo Seo, JeongHyun Ju, SunYeon Heo, SeungMoon Park, WonKyung Hong. Bioprocess Biosyst Eng 2018
13
50

Utilization of Shochu distillery wastewater for production of polyunsaturated fatty acids and xanthophylls using thraustochytrid.
Takashi Yamasaki, Tsunehiro Aki, Masami Shinozaki, Masahiro Taguchi, Seiji Kawamoto, Kazuhisa Ono. J Biosci Bioeng 2006
43
50

Automated generation of heuristics for biological sequence comparison.
Guy St C Slater, Ewan Birney. BMC Bioinformatics 2005
50

Genome Sequence of Schizochytrium sp. CCTCC M209059, an Effective Producer of Docosahexaenoic Acid-Rich Lipids.
Xiao-Jun Ji, Kai-Qiang Mo, Lu-Jing Ren, Gan-Lu Li, Jian-Zhong Huang, He Huang. Genome Announc 2015
20
50

Production of polyunsaturated fatty acids by polyketide synthases in both prokaryotes and eukaryotes.
J G Metz, P Roessler, D Facciotti, C Levering, F Dittrich, M Lassner, R Valentine, K Lardizabal, F Domergue, A Yamada,[...]. Science 2001
385
50

Draft genome sequence of the docosahexaenoic acid producing thraustochytrid Aurantiochytrium sp. T66.
Bin Liu, Helga Ertesvåg, Inga Marie Aasen, Olav Vadstein, Trygve Brautaset, Tonje Marita Bjerkan Heggeset. Genom Data 2016
19
50

Identification by HPLC-MS of carotenoids of the Thraustochytrium CHN-1 strain isolated from the Seto Inland Sea.
Marvelisa L Carmona, Takeshi Naganuma, Yukiho Yamaoka. Biosci Biotechnol Biochem 2003
22
50

Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments.
Brian J Haas, Steven L Salzberg, Wei Zhu, Mihaela Pertea, Jonathan E Allen, Joshua Orvis, Owen White, C Robin Buell, Jennifer R Wortman. Genome Biol 2008
947
50

TigrScan and GlimmerHMM: two open source ab initio eukaryotic gene-finders.
W H Majoros, M Pertea, S L Salzberg. Bioinformatics 2004
587
50


QUAST: quality assessment tool for genome assemblies.
Alexey Gurevich, Vladislav Saveliev, Nikolay Vyahhi, Glenn Tesler. Bioinformatics 2013
50

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs.
Felipe A Simão, Robert M Waterhouse, Panagiotis Ioannidis, Evgenia V Kriventseva, Evgeny M Zdobnov. Bioinformatics 2015
50

A rapid method of total lipid extraction and purification.
E G BLIGH, W J DYER. Can J Biochem Physiol 1959
50

Temperature Differentially Affects Gene Expression in Antarctic Thraustochytrid Oblongichytrium sp. RT2316-13.
Paris Paredes, Giovanni Larama, Liset Flores, Allison Leyton, Carmen Gloria Ili, Juan A Asenjo, Yusuf Chisti, Carolina Shene. Mar Drugs 2020
2
50

A Possible Trifunctional β-Carotene Synthase Gene Identified in the Draft Genome of Aurantiochytrium sp. Strain KH105.
Hiroaki Iwasaka, Ryo Koyanagi, Ryota Satoh, Akiko Nagano, Kenshi Watanabe, Kanako Hisata, Noriyuki Satoh, Tsunehiro Aki. Genes (Basel) 2018
11
50

ploidyNGS: visually exploring ploidy with Next Generation Sequencing data.
Renato Augusto Corrêa Dos Santos, Gustavo Henrique Goldman, Diego Mauricio Riaño-Pachón. Bioinformatics 2017
19
50

Sequencing, De Novo Assembly, and Annotation of the Complete Genome of a New Thraustochytrid Species, Strain CCAP_4062/3.
Khawla Seddiki, François Godart, Riccardo Aiese Cigliano, Walter Sanseverino, Mohamed Barakat, Philippe Ortet, Fabrice Rébeillé, Eric Maréchal, Olivier Cagnac, Alberto Amato. Genome Announc 2018
11
50

Daily and seasonal mitochondrial protection: Unraveling common possible mechanisms involving vitamin D and melatonin.
Feres José Mocayar Marón, León Ferder, Russel J Reiter, Walter Manucha. J Steroid Biochem Mol Biol 2020
19
50


A prenatal supplement with methylfolate for the treatment and prevention of depression in women trying to conceive and during pregnancy.
Marlene P Freeman, Gina M Savella, Taylor R Church, Lina Góez-Mogollón, Alexandra Z Sosinsky, Olivia B Noe, Anjali Kaimal, Lee S Cohen. Ann Clin Psychiatry 2019
4
50


S-Adenosyl Methionine and Transmethylation Pathways in Neuropsychiatric Diseases Throughout Life.
Jin Gao, Catherine M Cahill, Xudong Huang, Joshua L Roffman, Stefania Lamon-Fava, Maurizio Fava, David Mischoulon, Jack T Rogers. Neurotherapeutics 2018
23
50


Current Prospects of Nutraceuticals: A Review.
Vedant Sachdeva, Arpita Roy, Navneeta Bharadvaja. Curr Pharm Biotechnol 2020
18
50


DSM-5 Criteria and Depression Severity: Implications for Clinical Practice.
Julio C Tolentino, Sergio L Schmidt. Front Psychiatry 2018
35
50


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.