A citation-based method for searching scientific literature

James W Opzoomer, Jessica A Timms, Kevin Blighe, Thanos P Mourikis, Nicolas Chapuis, Richard Bekoe, Sedigeh Kareemaghay, Paola Nocerino, Benedetta Apollonio, Alan G Ramsay, Mahvash Tavassoli, Claire Harrison, Francesca Ciccarelli, Peter Parker, Michaela Fontenay, Paul R Barber, James N Arnold, Shahram Kordasti. Elife 2021
Times Cited: 1







List of co-cited articles
articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


FlowSOM: Using self-organizing maps for visualization and interpretation of cytometry data.
Sofie Van Gassen, Britt Callebaut, Mary J Van Helden, Bart N Lambrecht, Piet Demeester, Tom Dhaene, Yvan Saeys. Cytometry A 2015
494
100

Leukocyte complexity predicts breast cancer survival and functionally regulates response to chemotherapy.
David G DeNardo, Donal J Brennan, Elton Rexhepaj, Brian Ruffell, Stephen L Shiao, Stephen F Madden, William M Gallagher, Nikhil Wadhwani, Scott D Keil, Sharfaa A Junaid,[...]. Cancer Discov 2011
100

Macrophages are exploited from an innate wound healing response to facilitate cancer metastasis.
Tamara Muliaditan, Jonathan Caron, Mary Okesola, James W Opzoomer, Paris Kosti, Mirella Georgouli, Peter Gordon, Sharanpreet Lall, Desislava M Kuzeva, Luisa Pedro,[...]. Nat Commun 2018
34
100

CCL2 recruits inflammatory monocytes to facilitate breast-tumour metastasis.
Bin-Zhi Qian, Jiufeng Li, Hui Zhang, Takanori Kitamura, Jinghang Zhang, Liam R Campion, Elizabeth A Kaiser, Linda A Snyder, Jeffrey W Pollard. Nature 2011
100


LYVE-1-positive macrophages are present in normal murine eyes.
Heping Xu, Mei Chen, Delyth M Reid, John V Forrester. Invest Ophthalmol Vis Sci 2007
86
100


An abundant tissue macrophage population in the adult murine heart with a distinct alternatively-activated macrophage profile.
Alexander R Pinto, Rosa Paolicelli, Ekaterina Salimova, Janko Gospocic, Esfir Slonimsky, Daniel Bilbao-Cortes, James W Godwin, Nadia A Rosenthal. PLoS One 2012
188
100

Tumoral immune suppression by macrophages expressing fibroblast activation protein-α and heme oxygenase-1.
James N Arnold, Lukasz Magiera, Matthew Kraman, Douglas T Fearon. Cancer Immunol Res 2014
78
100

The shedded ectodomain of Lyve-1 expressed on M2-like tumor-associated macrophages inhibits melanoma cell proliferation.
Claudia Dollt, Kathrin Becker, Julia Michel, Susanne Melchers, Cleo-Aron Weis, Kai Schledzewski, Andreas Krewer, Loreen Kloss, Christoffer Gebhardt, Jochen Utikal,[...]. Oncotarget 2017
12
100

Trimmomatic: a flexible trimmer for Illumina sequence data.
Anthony M Bolger, Marc Lohse, Bjoern Usadel. Bioinformatics 2014
100

Direct visualization of macrophage-assisted tumor cell intravasation in mammary tumors.
Jeffrey B Wyckoff, Yarong Wang, Elaine Y Lin, Jiu-feng Li, Sumanta Goswami, E Richard Stanley, Jeffrey E Segall, Jeffrey W Pollard, John Condeelis. Cancer Res 2007
696
100

Ki67 is a Graded Rather than a Binary Marker of Proliferation versus Quiescence.
Iain Miller, Mingwei Min, Chen Yang, Chengzhe Tian, Sara Gookin, Dylan Carter, Sabrina L Spencer. Cell Rep 2018
134
100

Comprehensive Integration of Single-Cell Data.
Tim Stuart, Andrew Butler, Paul Hoffman, Christoph Hafemeister, Efthymia Papalexi, William M Mauck, Yuhan Hao, Marlon Stoeckius, Peter Smibert, Rahul Satija. Cell 2019
100

Spatially and functionally distinct subclasses of breast cancer-associated fibroblasts revealed by single cell RNA sequencing.
Michael Bartoschek, Nikolay Oskolkov, Matteo Bocci, John Lövrot, Christer Larsson, Mikael Sommarin, Chris D Madsen, David Lindgren, Gyula Pekar, Göran Karlsson,[...]. Nat Commun 2018
207
100

Regulation of fibrogenic/fibrolytic genes by platelet-derived growth factor C, a novel growth factor, in human dermal fibroblasts.
Masatoshi Jinnin, Hironobu Ihn, Yoshihiro Mimura, Yoshihide Asano, Kenichi Yamane, Kunihiko Tamaki. J Cell Physiol 2005
52
100



Dimensionality reduction for visualizing single-cell data using UMAP.
Etienne Becht, Leland McInnes, John Healy, Charles-Antoine Dutertre, Immanuel W H Kwok, Lai Guan Ng, Florent Ginhoux, Evan W Newell. Nat Biotechnol 2018
918
100

Complex heatmaps reveal patterns and correlations in multidimensional genomic data.
Zuguang Gu, Roland Eils, Matthias Schlesner. Bioinformatics 2016
100

Targeting CXCL12 from FAP-expressing carcinoma-associated fibroblasts synergizes with anti-PD-L1 immunotherapy in pancreatic cancer.
Christine Feig, James O Jones, Matthew Kraman, Richard J B Wells, Andrew Deonarine, Derek S Chan, Claire M Connell, Edward W Roberts, Qi Zhao, Otavia L Caballero,[...]. Proc Natl Acad Sci U S A 2013
898
100


Two distinct interstitial macrophage populations coexist across tissues in specific subtissular niches.
Svetoslav Chakarov, Hwee Ying Lim, Leonard Tan, Sheau Yng Lim, Peter See, Josephine Lum, Xiao-Meng Zhang, Shihui Foo, Satoshi Nakamizo, Kaibo Duan,[...]. Science 2019
238
100

A distinct macrophage population mediates metastatic breast cancer cell extravasation, establishment and growth.
Binzhi Qian, Yan Deng, Jae Hong Im, Ruth J Muschel, Yiyu Zou, Jiufeng Li, Richard A Lang, Jeffrey W Pollard. PLoS One 2009
429
100

Myofibroblast proliferation and heterogeneity are supported by macrophages during skin repair.
Brett A Shook, Renee R Wasko, Guillermo C Rivera-Gonzalez, Emilio Salazar-Gatzimas, Francesc López-Giráldez, Biraja C Dash, Andrés R Muñoz-Rojas, Krystal D Aultman, Rachel K Zwick, Vivian Lei,[...]. Science 2018
136
100

PDGF-C mediates the angiogenic and tumorigenic properties of fibroblasts associated with tumors refractory to anti-VEGF treatment.
Yongping Crawford, Ian Kasman, Lanlan Yu, Cuiling Zhong, Xiumin Wu, Zora Modrusan, Josh Kaminker, Napoleone Ferrara. Cancer Cell 2009
407
100

Software for computing and annotating genomic ranges.
Michael Lawrence, Wolfgang Huber, Hervé Pagès, Patrick Aboyoun, Marc Carlson, Robert Gentleman, Martin T Morgan, Vincent J Carey. PLoS Comput Biol 2013
100

Pericytes: developmental, physiological, and pathological perspectives, problems, and promises.
Annika Armulik, Guillem Genové, Christer Betsholtz. Dev Cell 2011
100

Peripheral lymph nodes contain migratory and resident innate lymphoid cell populations.
Emma E Dutton, Dominika W Gajdasik, Claire Willis, Remi Fiancette, Emma L Bishop, Ana Camelo, Matthew A Sleeman, Margherita Coccia, Arnaud M Didierlaurent, Michio Tomura,[...]. Sci Immunol 2019
30
100

Hyaluronan Receptor LYVE-1-Expressing Macrophages Maintain Arterial Tone through Hyaluronan-Mediated Regulation of Smooth Muscle Cell Collagen.
Hwee Ying Lim, Sheau Yng Lim, Chek Kun Tan, Chung Hwee Thiam, Chi Ching Goh, Daniel Carbajo, Samantha Hui Shang Chew, Peter See, Svetoslav Chakarov, Xiao Nong Wang,[...]. Immunity 2018
38
100

Angiogenic role of LYVE-1-positive macrophages in adipose tissue.
Chung-Hyun Cho, Young Jun Koh, Jinah Han, Hoon-Ki Sung, Hyuek Jong Lee, Tohru Morisada, Reto A Schwendener, Rolf A Brekken, Guson Kang, Yuichi Oike,[...]. Circ Res 2007
183
100

Tumor-Residing Batf3 Dendritic Cells Are Required for Effector T Cell Trafficking and Adoptive T Cell Therapy.
Stefani Spranger, Daisy Dai, Brendan Horton, Thomas F Gajewski. Cancer Cell 2017
545
100

Specific targeting of CD163+ TAMs mobilizes inflammatory monocytes and promotes T cell-mediated tumor regression.
Anders Etzerodt, Kyriaki Tsalkitzi, Maciej Maniecki, William Damsky, Marcello Delfini, Elodie Baudoin, Morgane Moulin, Marcus Bosenberg, Jonas Heilskov Graversen, Nathalie Auphan-Anezin,[...]. J Exp Med 2019
69
100

Human Tumor-Associated Macrophage and Monocyte Transcriptional Landscapes Reveal Cancer-Specific Reprogramming, Biomarkers, and Therapeutic Targets.
Luca Cassetta, Stamatina Fragkogianni, Andrew H Sims, Agnieszka Swierczak, Lesley M Forrester, Hui Zhang, Daniel Y H Soong, Tiziana Cotechini, Pavana Anur, Elaine Y Lin,[...]. Cancer Cell 2019
252
100

destiny: diffusion maps for large-scale single-cell data in R.
Philipp Angerer, Laleh Haghverdi, Maren Büttner, Fabian J Theis, Carsten Marr, Florian Buettner. Bioinformatics 2016
217
100

CellPhoneDB: inferring cell-cell communication from combined expression of multi-subunit ligand-receptor complexes.
Mirjana Efremova, Miquel Vento-Tormo, Sarah A Teichmann, Roser Vento-Tormo. Nat Protoc 2020
308
100

Platelet-derived growth factor C (PDGF-C), a novel growth factor that binds to PDGF alpha and beta receptor.
D G Gilbertson, M E Duff, J W West, J D Kelly, P O Sheppard, P D Hofstrand, Z Gao, K Shoemaker, T R Bukowski, M Moore,[...]. J Biol Chem 2001
207
100

The Multifaceted Role of Perivascular Macrophages in Tumors.
Claire E Lewis, Allison S Harney, Jeffrey W Pollard. Cancer Cell 2016
36
100

Tie2 identifies a hematopoietic lineage of proangiogenic monocytes required for tumor vessel formation and a mesenchymal population of pericyte progenitors.
Michele De Palma, Mary Anna Venneri, Rossella Galli, Lucia Sergi Sergi, Letterio S Politi, Maurilio Sampaolesi, Luigi Naldini. Cancer Cell 2005
940
100

Slingshot: cell lineage and pseudotime inference for single-cell transcriptomics.
Kelly Street, Davide Risso, Russell B Fletcher, Diya Das, John Ngai, Nir Yosef, Elizabeth Purdom, Sandrine Dudoit. BMC Genomics 2018
374
100

Fibroblast Heterogeneity and Immunosuppressive Environment in Human Breast Cancer.
Ana Costa, Yann Kieffer, Alix Scholer-Dahirel, Floriane Pelon, Brigitte Bourachot, Melissa Cardon, Philemon Sirven, Ilaria Magagna, Laetitia Fuhrmann, Charles Bernard,[...]. Cancer Cell 2018
453
100

Circuit Design Features of a Stable Two-Cell System.
Xu Zhou, Ruth A Franklin, Miri Adler, Jeremy B Jacox, Will Bailis, Justin A Shyer, Richard A Flavell, Avi Mayo, Uri Alon, Ruslan Medzhitov. Cell 2018
105
100

M-1/M-2 macrophages and the Th1/Th2 paradigm.
C D Mills, K Kincaid, J M Alt, M J Heilman, A M Hill. J Immunol 2000
100

Critical Role for CD103(+)/CD141(+) Dendritic Cells Bearing CCR7 for Tumor Antigen Trafficking and Priming of T Cell Immunity in Melanoma.
Edward W Roberts, Miranda L Broz, Mikhail Binnewies, Mark B Headley, Amanda E Nelson, Denise M Wolf, Tsuneyasu Kaisho, Dusan Bogunovic, Nina Bhardwaj, Matthew F Krummel. Cancer Cell 2016
368
100

Single-Cell Mapping of Human Brain Cancer Reveals Tumor-Specific Instruction of Tissue-Invading Leukocytes.
Ekaterina Friebel, Konstantina Kapolou, Susanne Unger, Nicolás Gonzalo Núñez, Sebastian Utz, Elisabeth Jane Rushing, Luca Regli, Michael Weller, Melanie Greter, Sonia Tugues,[...]. Cell 2020
108
100

STAR: ultrafast universal RNA-seq aligner.
Alexander Dobin, Carrie A Davis, Felix Schlesinger, Jorg Drenkow, Chris Zaleski, Sonali Jha, Philippe Batut, Mark Chaisson, Thomas R Gingeras. Bioinformatics 2013
100

Tumor-associated macrophages: from mechanisms to therapy.
Roy Noy, Jeffrey W Pollard. Immunity 2014
100

Real-Time Imaging Reveals Local, Transient Vascular Permeability, and Tumor Cell Intravasation Stimulated by TIE2hi Macrophage-Derived VEGFA.
Allison S Harney, Esther N Arwert, David Entenberg, Yarong Wang, Peng Guo, Bin-Zhi Qian, Maja H Oktay, Jeffrey W Pollard, Joan G Jones, John S Condeelis. Cancer Discov 2015
285
100

Single-cell reconstruction of the early maternal-fetal interface in humans.
Roser Vento-Tormo, Mirjana Efremova, Rachel A Botting, Margherita Y Turco, Miquel Vento-Tormo, Kerstin B Meyer, Jong-Eun Park, Emily Stephenson, Krzysztof Polański, Angela Goncalves,[...]. Nature 2018
570
100

The cellular and molecular origin of tumor-associated macrophages.
Ruth A Franklin, Will Liao, Abira Sarkar, Myoungjoo V Kim, Michael R Bivona, Kang Liu, Eric G Pamer, Ming O Li. Science 2014
681
100


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.