A citation-based method for searching scientific literature

Mariana Lopes, Sandra Louzada, Margarida Gama-Carvalho, Raquel Chaves. Int J Mol Sci 2021
Times Cited: 2







List of co-cited articles
5 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity



Analysis of the largest tandemly repeated DNA families in the human genome.
Peter E Warburton, Dan Hasson, Flavia Guillem, Chloe Lescale, Xiaoping Jin, Gyorgy Abrusan. BMC Genomics 2008
93
100

A strand-specific burst in transcription of pericentric satellites is required for chromocenter formation and early mouse development.
Aline V Probst, Ikuhiro Okamoto, Miguel Casanova, Fatima El Marjou, Patricia Le Baccon, Geneviève Almouzni. Dev Cell 2010
197
100

A transcriptomic analysis of human centromeric and pericentric sequences in normal and tumor cells.
Angéline Eymery, Béatrice Horard, Michèle El Atifi-Borel, Geneviève Fourel, François Berger, Anne-Laure Vitte, Arnaud Van den Broeck, Elisabeth Brambilla, Alexandra Fournier, Mary Callanan,[...]. Nucleic Acids Res 2009
80
100

Aberrant overexpression of satellite repeats in pancreatic and other epithelial cancers.
David T Ting, Doron Lipson, Suchismita Paul, Brian W Brannigan, Sara Akhavanfard, Erik J Coffman, Gianmarco Contino, Vikram Deshpande, A John Iafrate, Stan Letovsky,[...]. Science 2011
309
100

The Sequence Alignment/Map format and SAMtools.
Heng Li, Bob Handsaker, Alec Wysoker, Tim Fennell, Jue Ruan, Nils Homer, Gabor Marth, Goncalo Abecasis, Richard Durbin. Bioinformatics 2009
50

A computational pipeline for comparative ChIP-seq analyses.
Anaïs F Bardet, Qiye He, Julia Zeitlinger, Alexander Stark. Nat Protoc 2011
73
50

An atlas of dynamic chromatin landscapes in mouse fetal development.
David U Gorkin, Iros Barozzi, Yuan Zhao, Yanxiao Zhang, Hui Huang, Ah Young Lee, Bin Li, Joshua Chiou, Andre Wildberg, Bo Ding,[...]. Nature 2020
50
50

Heterochromatin-Encoded Satellite RNAs Induce Breast Cancer.
Quan Zhu, Nien Hoong, Aaron Aslanian, Toshiro Hara, Christopher Benner, Sven Heinz, Karen H Miga, Eugene Ke, Sachin Verma, Jan Soroczynski,[...]. Mol Cell 2018
47
50

Analysis of the Expression of Repetitive DNA Elements in Osteosarcoma.
Xuan D Ho, Hoang G Nguyen, Le H Trinh, Ene Reimann, Ele Prans, Gea Kõks, Katre Maasalu, Van Q Le, Van H Nguyen, Nghi T N Le,[...]. Front Genet 2017
16
50

Epigenetic regulation in cancer progression.
Eva Baxter, Karolina Windloch, Frank Gannon, Jason S Lee. Cell Biosci 2014
70
50

Circos: an information aesthetic for comparative genomics.
Martin Krzywinski, Jacqueline Schein, Inanç Birol, Joseph Connors, Randy Gascoyne, Doug Horsman, Steven J Jones, Marco A Marra. Genome Res 2009
50


Role of H3K9me3 heterochromatin in cell identity establishment and maintenance.
Dario Nicetto, Kenneth S Zaret. Curr Opin Genet Dev 2019
50
50

HERV-K(HML-2) rec and np9 transcripts not restricted to disease but present in many normal human tissues.
Katja Schmitt, Kristina Heyne, Klaus Roemer, Eckart Meese, Jens Mayer. Mob DNA 2015
26
50

A functional survey of the enhancer activity of conserved non-coding sequences from vertebrate Iroquois cluster gene deserts.
Elisa de la Calle-Mustienes, Cármen Gloria Feijóo, Miguel Manzanares, Juan J Tena, Elisa Rodríguez-Seguel, Annalisa Letizia, Miguel L Allende, José Luis Gómez-Skarmeta. Genome Res 2005
150
50

Genomic Repeats Categorize Genes with Distinct Functions for Orchestrated Regulation.
J Yuyang Lu, Wen Shao, Lei Chang, Yafei Yin, Tong Li, Hui Zhang, Yantao Hong, Michelle Percharde, Lerui Guo, Zhongyang Wu,[...]. Cell Rep 2020
34
50


Satellite DNA Modulates Gene Expression in the Beetle Tribolium castaneum after Heat Stress.
Isidoro Feliciello, Ivana Akrap, Đurđica Ugarković. PLoS Genet 2015
37
50

Alpha satellite DNA biology: finding function in the recesses of the genome.
Shannon M McNulty, Beth A Sullivan. Chromosome Res 2018
46
50



The profile of repeat-associated histone lysine methylation states in the mouse epigenome.
Joost H A Martens, Roderick J O'Sullivan, Ulrich Braunschweig, Susanne Opravil, Martin Radolf, Peter Steinlein, Thomas Jenuwein. EMBO J 2005
485
50


Practical guidelines for the comprehensive analysis of ChIP-seq data.
Timothy Bailey, Pawel Krajewski, Istvan Ladunga, Celine Lefebvre, Qunhua Li, Tao Liu, Pedro Madrigal, Cenny Taslim, Jie Zhang. PLoS Comput Biol 2013
132
50

Cancer-associated alteration of pericentromeric heterochromatin may contribute to chromosome instability.
R B Slee, C M Steiner, B-S Herbert, G H Vance, R J Hickey, T Schwarz, S Christan, M Radovich, B P Schneider, D Schindelhauer,[...]. Oncogene 2012
68
50

Human rDNA copy number is unstable in metastatic breast cancers.
Virginia Valori, Katalin Tus, Christina Laukaitis, David T Harris, Lauren LeBeau, Keith A Maggert. Epigenetics 2020
11
50

Retrotransposon-induced heterochromatin spreading in the mouse revealed by insertional polymorphisms.
Rita Rebollo, Mohammad M Karimi, Misha Bilenky, Liane Gagnier, Katharine Miceli-Royer, Ying Zhang, Preeti Goyal, Thomas M Keane, Steven Jones, Martin Hirst,[...]. PLoS Genet 2011
88
50



RNA polymerase II-binding aptamers in human ACRO1 satellites disrupt transcription in cis.
Jennifer L Boots, Frederike von Pelchrzim, Adam Weiss, Bob Zimmermann, Theres Friesacher, Maximilian Radtke, Marek Żywicki, Doris Chen, Katarzyna Matylla-Kulińska, Bojan Zagrovic,[...]. Transcription 2020
1
100

Human gamma-satellite DNA maintains open chromatin structure and protects a transgene from epigenetic silencing.
Jung-Hyun Kim, Thomas Ebersole, Natalay Kouprina, Vladimir N Noskov, Jun-Ichirou Ohzeki, Hiroshi Masumoto, Brankica Mravinac, Beth A Sullivan, Adam Pavlicek, Sinisa Dovat,[...]. Genome Res 2009
51
50

Chromatin dynamics in the regulation of cell fate allocation during early embryogenesis.
Adam Burton, Maria-Elena Torres-Padilla. Nat Rev Mol Cell Biol 2014
119
50


Evolutionary History of Alpha Satellite DNA Repeats Dispersed within Human Genome Euchromatin.
Isidoro Feliciello, Željka Pezer, Dušan Kordiš, Branka Bruvo Mađarić, Đurđica Ugarković. Genome Biol Evol 2020
5
50

Visualizing Genomic Data Using Gviz and Bioconductor.
Florian Hahne, Robert Ivanek. Methods Mol Biol 2016
313
50

H3K9me3-Dependent Heterochromatin: Barrier to Cell Fate Changes.
Justin S Becker, Dario Nicetto, Kenneth S Zaret. Trends Genet 2016
196
50


α satellite DNA variation and function of the human centromere.
Lori L Sullivan, Kimberline Chew, Beth A Sullivan. Nucleus 2017
26
50

Chromosomal localization of human satellites 2 and 3 by a FISH method using oligonucleotides as probes.
I Tagarro, A M Fernández-Peralta, J J González-Aguilera. Hum Genet 1994
90
50

Impact of artifact removal on ChIP quality metrics in ChIP-seq and ChIP-exo data.
Thomas S Carroll, Ziwei Liang, Rafik Salama, Rory Stark, Ines de Santiago. Front Genet 2014
96
50

Fast gapped-read alignment with Bowtie 2.
Ben Langmead, Steven L Salzberg. Nat Methods 2012
50


Spreading of heterochromatin is limited to specific families of maize retrotransposons.
Steven R Eichten, Nathanael A Ellis, Irina Makarevitch, Cheng-Ting Yeh, Jonathan I Gent, Lin Guo, Karen M McGinnis, Xiaoyu Zhang, Patrick S Schnable, Matthew W Vaughn,[...]. PLoS Genet 2012
106
50

Repbase Update, a database of repetitive elements in eukaryotic genomes.
Weidong Bao, Kenji K Kojima, Oleksiy Kohany. Mob DNA 2015
50

Progressive proximal expansion of the primate X chromosome centromere.
Mary G Schueler, John M Dunn, Christine P Bird, Mark T Ross, Luigi Viggiano, Mariano Rocchi, Huntington F Willard, Eric D Green. Proc Natl Acad Sci U S A 2005
61
50

The control of gene expression and cell identity by H3K9 trimethylation.
Maria Ninova, Katalin Fejes Tóth, Alexei A Aravin. Development 2019
30
50

Heterochromatin establishment during early mammalian development is regulated by pericentromeric RNA and characterized by non-repressive H3K9me3.
Adam Burton, Vincent Brochard, Carmen Galan, Elias R Ruiz-Morales, Quirze Rovira, Diego Rodriguez-Terrones, Kai Kruse, Stéphanie Le Gras, Vishnu S Udayakumar, Hang Gyeong Chin,[...]. Nat Cell Biol 2020
20
50

Selective silencing of euchromatic L1s revealed by genome-wide screens for L1 regulators.
Nian Liu, Cameron H Lee, Tomek Swigut, Edward Grow, Bo Gu, Michael C Bassik, Joanna Wysocka. Nature 2018
108
50

Dispersion Profiles and Gene Associations of Repetitive DNAs in the Euchromatin of the Beetle Tribolium castaneum.
Josip Brajković, Željka Pezer, Branka Bruvo-Mađarić, Antonio Sermek, Isidoro Feliciello, Đurđica Ugarković. G3 (Bethesda) 2018
9
50


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.