A citation-based method for searching scientific literature


List of co-cited articles
4 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Functional interpretation of single cell similarity maps.
David DeTomaso, Matthew G Jones, Meena Subramaniam, Tal Ashuach, Chun J Ye, Nir Yosef. Nat Commun 2019
48
75

STAR: ultrafast universal RNA-seq aligner.
Alexander Dobin, Carrie A Davis, Felix Schlesinger, Jorg Drenkow, Chris Zaleski, Sonali Jha, Philippe Batut, Mark Chaisson, Thomas R Gingeras. Bioinformatics 2013
50

Deep generative modeling for single-cell transcriptomics.
Romain Lopez, Jeffrey Regier, Michael B Cole, Michael I Jordan, Nir Yosef. Nat Methods 2018
305
50

Visualization and analysis of gene expression in tissue sections by spatial transcriptomics.
Patrik L Ståhl, Fredrik Salmén, Sanja Vickovic, Anna Lundmark, José Fernández Navarro, Jens Magnusson, Stefania Giacomello, Michaela Asp, Jakub O Westholm, Mikael Huss,[...]. Science 2016
722
50


Regulation of coactivator complex assembly and function by protein arginine methylation and demethylimination.
Young-Ho Lee, Scott A Coonrod, W Lee Kraus, Mary Anne Jelinek, Michael R Stallcup. Proc Natl Acad Sci U S A 2005
171
25

Transcription factor AP1 potentiates chromatin accessibility and glucocorticoid receptor binding.
Simon C Biddie, Sam John, Pete J Sabo, Robert E Thurman, Thomas A Johnson, R Louis Schiltz, Tina B Miranda, Myong-Hee Sung, Saskia Trump, Stafford L Lightman,[...]. Mol Cell 2011
304
25

AS03-adjuvanted H5N1 vaccine promotes antibody diversity and affinity maturation, NAI titers, cross-clade H5N1 neutralization, but not H1N1 cross-subtype neutralization.
Surender Khurana, Elizabeth M Coyle, Jody Manischewitz, Lisa R King, Jin Gao, Ronald N Germain, Pamela L Schwartzberg, John S Tsang, Hana Golding. NPJ Vaccines 2018
32
25

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data.
Mark D Robinson, Davis J McCarthy, Gordon K Smyth. Bioinformatics 2010
25

Discovery of a selective catalytic p300/CBP inhibitor that targets lineage-specific tumours.
Loren M Lasko, Clarissa G Jakob, Rohinton P Edalji, Wei Qiu, Debra Montgomery, Enrico L Digiammarino, T Matt Hansen, Roberto M Risi, Robin Frey, Vlasios Manaves,[...]. Nature 2017
275
25

YAP Aggravates Inflammatory Bowel Disease by Regulating M1/M2 Macrophage Polarization and Gut Microbial Homeostasis.
Xin Zhou, Weiyun Li, Shuang Wang, Panli Zhang, Qiong Wang, Jun Xiao, Chi Zhang, Xin Zheng, Xiaoyan Xu, Shengjie Xue,[...]. Cell Rep 2019
79
25

Moz and retinoic acid coordinately regulate H3K9 acetylation, Hox gene expression, and segment identity.
Anne K Voss, Caitlin Collin, Mathew P Dixon, Tim Thomas. Dev Cell 2009
100
25

CD14+CD16+ monocytes are the main target of Zika virus infection in peripheral blood mononuclear cells in a paediatric study in Nicaragua.
Daniela Michlmayr, Paulina Andrade, Karla Gonzalez, Angel Balmaseda, Eva Harris. Nat Microbiol 2017
102
25

AP-1 Contributes to Chromatin Accessibility to Promote Sarcomere Disassembly and Cardiomyocyte Protrusion During Zebrafish Heart Regeneration.
Arica Beisaw, Carsten Kuenne, Stefan Guenther, Julia Dallmann, Chi-Chung Wu, Mette Bentsen, Mario Looso, Didier Y R Stainier. Circ Res 2020
27
25

Systems vaccinology: Enabling rational vaccine design with systems biological approaches.
Thomas Hagan, Helder I Nakaya, Shankar Subramaniam, Bali Pulendran. Vaccine 2015
70
25

The molecular hallmarks of epigenetic control.
C David Allis, Thomas Jenuwein. Nat Rev Genet 2016
25

Regulation of Inflammation- and Infection-Driven Hematopoiesis.
Steffen Boettcher, Markus G Manz. Trends Immunol 2017
110
25

Adjuvanting a subunit COVID-19 vaccine to induce protective immunity.
Prabhu S Arunachalam, Alexandra C Walls, Nadia Golden, Caroline Atyeo, Stephanie Fischinger, Chunfeng Li, Pyone Aye, Mary Jane Navarro, Lilin Lai, Venkata Viswanadh Edara,[...]. Nature 2021
75
25

The AP-1 Transcription Factor c-Jun Promotes Arthritis by Regulating Cyclooxygenase-2 and Arginase-1 Expression in Macrophages.
Nicole Hannemann, Jutta Jordan, Sushmita Paul, Stephen Reid, Hanns-Wolf Baenkler, Sophia Sonnewald, Tobias Bäuerle, Julio Vera, Georg Schett, Aline Bozec. J Immunol 2017
34
25


A lipopolysaccharide-specific enhancer complex involving Ets, Elk-1, Sp1, and CREB binding protein and p300 is recruited to the tumor necrosis factor alpha promoter in vivo.
E Y Tsai, J V Falvo, A V Tsytsykova, A K Barczak, A M Reimold, L H Glimcher, M J Fenton, D C Gordon, I F Dunn, A E Goldfeld. Mol Cell Biol 2000
218
25

Global analyses of human immune variation reveal baseline predictors of postvaccination responses.
John S Tsang, Pamela L Schwartzberg, Yuri Kotliarov, Angelique Biancotto, Zhi Xie, Ronald N Germain, Ena Wang, Matthew J Olnes, Manikandan Narayanan, Hana Golding,[...]. Cell 2014
265
25

Modulation of Myelopoiesis Progenitors Is an Integral Component of Trained Immunity.
Ioannis Mitroulis, Klara Ruppova, Baomei Wang, Lan-Sun Chen, Michal Grzybek, Tatyana Grinenko, Anne Eugster, Maria Troullinaki, Alessandra Palladini, Ioannis Kourtzelis,[...]. Cell 2018
410
25


The IRF family transcription factors in immunity and oncogenesis.
Tomohiko Tamura, Hideyuki Yanai, David Savitsky, Tadatsugu Taniguchi. Annu Rev Immunol 2008
826
25

Systems vaccinology.
Bali Pulendran, Shuzhao Li, Helder I Nakaya. Immunity 2010
243
25

Control of proinflammatory gene programs by regulated trimethylation and demethylation of histone H4K20.
Joshua D Stender, Gabriel Pascual, Wen Liu, Minna U Kaikkonen, Kevin Do, Nathanael J Spann, Michael Boutros, Norbert Perrimon, Michael G Rosenfeld, Christopher K Glass. Mol Cell 2012
134
25

Single-cell analysis reveals that stochasticity and paracrine signaling control interferon-alpha production by plasmacytoid dendritic cells.
Florian Wimmers, Nikita Subedi, Nicole van Buuringen, Daan Heister, Judith Vivié, Inge Beeren-Reinieren, Rob Woestenenk, Harry Dolstra, Aigars Piruska, Joannes F M Jacobs,[...]. Nat Commun 2018
53
25

MST1 promotes apoptosis through phosphorylation of histone H2AX.
Weihong Wen, Feng Zhu, Jishuai Zhang, Young-Sam Keum, Tatyana Zykova, Ke Yao, Cong Peng, Duo Zheng, Yong-Yeon Cho, Wei-ya Ma,[...]. J Biol Chem 2010
49
25


Integrated single-cell analysis of multicellular immune dynamics during hyperacute HIV-1 infection.
Samuel W Kazer, Toby P Aicher, Daniel M Muema, Shaina L Carroll, Jose Ordovas-Montanes, Vincent N Miao, Ang A Tu, Carly G K Ziegler, Sarah K Nyquist, Emily B Wong,[...]. Nat Med 2020
30
25

Defining trained immunity and its role in health and disease.
Mihai G Netea, Jorge Domínguez-Andrés, Luis B Barreiro, Triantafyllos Chavakis, Maziar Divangahi, Elaine Fuchs, Leo A B Joosten, Jos W M van der Meer, Musa M Mhlanga, Willem J M Mulder,[...]. Nat Rev Immunol 2020
510
25

Emerging concepts in the science of vaccine adjuvants.
Bali Pulendran, Prabhu S Arunachalam, Derek T O'Hagan. Nat Rev Drug Discov 2021
79
25

Integrated Single-Cell Analysis Maps the Continuous Regulatory Landscape of Human Hematopoietic Differentiation.
Jason D Buenrostro, M Ryan Corces, Caleb A Lareau, Beijing Wu, Alicia N Schep, Martin J Aryee, Ravindra Majeti, Howard Y Chang, William J Greenleaf. Cell 2018
226
25

JUNB is a key transcriptional modulator of macrophage activation.
Mary F Fontana, Alyssa Baccarella, Nidhi Pancholi, Miles A Pufall, De'Broski R Herbert, Charles C Kim. J Immunol 2015
46
25

Single-Cell Chromatin Modification Profiling Reveals Increased Epigenetic Variations with Aging.
Peggie Cheung, Francesco Vallania, Hayley C Warsinske, Michele Donato, Steven Schaffert, Sarah E Chang, Mai Dvorak, Cornelia L Dekker, Mark M Davis, Paul J Utz,[...]. Cell 2018
138
25

Massively parallel single-cell chromatin landscapes of human immune cell development and intratumoral T cell exhaustion.
Ansuman T Satpathy, Jeffrey M Granja, Kathryn E Yost, Yanyan Qi, Francesca Meschi, Geoffrey P McDermott, Brett N Olsen, Maxwell R Mumbach, Sarah E Pierce, M Ryan Corces,[...]. Nat Biotechnol 2019
199
25

Developmental and Functional Heterogeneity of Monocytes.
Martin Guilliams, Alexander Mildner, Simon Yona. Immunity 2018
278
25

Expression and activity of citrullinating peptidylarginine deiminase enzymes in monocytes and macrophages.
E R Vossenaar, T R D Radstake, A van der Heijden, M A M van Mansum, C Dieteren, D-J de Rooij, P Barrera, A J W Zendman, W J van Venrooij. Ann Rheum Dis 2004
298
25

Development and evaluation of AS03, an Adjuvant System containing α-tocopherol and squalene in an oil-in-water emulsion.
Nathalie Garçon, David W Vaughn, Arnaud M Didierlaurent. Expert Rev Vaccines 2012
177
25

Aging-dependent alterations in gene expression and a mitochondrial signature of responsiveness to human influenza vaccination.
Juilee Thakar, Subhasis Mohanty, A Phillip West, Samit R Joshi, Ikuyo Ueda, Jean Wilson, Hailong Meng, Tamara P Blevins, Sui Tsang, Mark Trentalange,[...]. Aging (Albany NY) 2015
39
25

Cytoscape: a software environment for integrated models of biomolecular interaction networks.
Paul Shannon, Andrew Markiel, Owen Ozier, Nitin S Baliga, Jonathan T Wang, Daniel Ramage, Nada Amin, Benno Schwikowski, Trey Ideker. Genome Res 2003
25

IRF1 Maintains Optimal Constitutive Expression of Antiviral Genes and Regulates the Early Antiviral Response.
Debasis Panda, Erisa Gjinaj, Mahesh Bachu, Erica Squire, Hilary Novatt, Keiko Ozato, Ronald L Rabin. Front Immunol 2019
27
25

DNA Methylation Dynamics of Human Hematopoietic Stem Cell Differentiation.
Matthias Farlik, Florian Halbritter, Fabian Müller, Fizzah A Choudry, Peter Ebert, Johanna Klughammer, Samantha Farrow, Antonella Santoro, Valerio Ciaurro, Anthony Mathur,[...]. Cell Stem Cell 2016
125
25

Severe COVID-19 Is Marked by a Dysregulated Myeloid Cell Compartment.
Jonas Schulte-Schrepping, Nico Reusch, Daniela Paclik, Kevin Baßler, Stephan Schlickeiser, Bowen Zhang, Benjamin Krämer, Tobias Krammer, Sophia Brumhard, Lorenzo Bonaguro,[...]. Cell 2020
501
25

Effector CD8 T cells dedifferentiate into long-lived memory cells.
Ben Youngblood, J Scott Hale, Haydn T Kissick, Eunseon Ahn, Xiaojin Xu, Andreas Wieland, Koichi Araki, Erin E West, Hazem E Ghoneim, Yiping Fan,[...]. Nature 2017
234
25

BCG Educates Hematopoietic Stem Cells to Generate Protective Innate Immunity against Tuberculosis.
Eva Kaufmann, Joaquin Sanz, Jonathan L Dunn, Nargis Khan, Laura E Mendonça, Alain Pacis, Fanny Tzelepis, Erwan Pernet, Anne Dumaine, Jean-Christophe Grenier,[...]. Cell 2018
448
25

Origin and differentiation of human memory CD8 T cells after vaccination.
Rama S Akondy, Mark Fitch, Srilatha Edupuganti, Shu Yang, Haydn T Kissick, Kelvin W Li, Ben A Youngblood, Hossam A Abdelsamed, Donald J McGuire, Kristen W Cohen,[...]. Nature 2017
238
25

Systems Analysis of Immunity to Influenza Vaccination across Multiple Years and in Diverse Populations Reveals Shared Molecular Signatures.
Helder I Nakaya, Thomas Hagan, Sai S Duraisingham, Eva K Lee, Marcin Kwissa, Nadine Rouphael, Daniela Frasca, Merril Gersten, Aneesh K Mehta, Renaud Gaujoux,[...]. Immunity 2015
152
25

Exploration, normalization, and summaries of high density oligonucleotide array probe level data.
Rafael A Irizarry, Bridget Hobbs, Francois Collin, Yasmin D Beazer-Barclay, Kristen J Antonellis, Uwe Scherf, Terence P Speed. Biostatistics 2003
25


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.