A citation-based method for searching scientific literature

O G Maksimenko, D V Fursenko, E V Belova, P G Georgiev. Acta Naturae 2021
Times Cited: 3







List of co-cited articles
25 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Architectural proteins Pita, Zw5,and ZIPIC contain homodimerization domain and support specific long-range interactions in Drosophila.
Nikolay Zolotarev, Anna Fedotova, Olga Kyrchanova, Artem Bonchuk, Aleksey A Penin, Andrey S Lando, Irina A Eliseeva, Ivan V Kulakovskiy, Oksana Maksimenko, Pavel Georgiev. Nucleic Acids Res 2016
33
100


The insulator functions of the Drosophila polydactyl C2H2 zinc finger protein CTCF: Necessity versus sufficiency.
Olga Kyrchanova, Oksana Maksimenko, Airat Ibragimov, Vladimir Sokolov, Nikolay Postika, Maria Lukyanova, Paul Schedl, Pavel Georgiev. Sci Adv 2020
13
66

Chromatin binding of Gcn5 in Drosophila is largely mediated by CP190.
Tamer Ali, Marcus Krüger, Sabin Bhuju, Michael Jarek, Marek Bartkuhn, Rainer Renkawitz. Nucleic Acids Res 2017
10
66

Coordinated control of dCTCF and gypsy chromatin insulators in Drosophila.
Tatiana I Gerasimova, Elissa P Lei, Ashley M Bushey, Victor G Corces. Mol Cell 2007
104
66

Mechanisms of Enhancer-Promoter Interactions in Higher Eukaryotes.
Olga Kyrchanova, Pavel Georgiev. Int J Mol Sci 2021
6
66



A functional insulator screen identifies NURF and dREAM components to be required for enhancer-blocking.
Dorte Bohla, Martin Herold, Imke Panzer, Melanie K Buxa, Tamer Ali, Jeroen Demmers, Marcus Krüger, Maren Scharfe, Michael Jarek, Marek Bartkuhn,[...]. PLoS One 2014
26
66

Two new insulator proteins, Pita and ZIPIC, target CP190 to chromatin.
Oksana Maksimenko, Marek Bartkuhn, Viacheslav Stakhov, Martin Herold, Nickolay Zolotarev, Theresa Jox, Melanie K Buxa, Ramona Kirsch, Artem Bonchuk, Anna Fedotova,[...]. Genome Res 2015
63
66

Mechanism and functional role of the interaction between CP190 and the architectural protein Pita in Drosophila melanogaster.
Marat Sabirov, Olga Kyrchanova, Galina V Pokholkova, Artem Bonchuk, Natalia Klimenko, Elena Belova, Igor F Zhimulev, Oksana Maksimenko, Pavel Georgiev. Epigenetics Chromatin 2021
2
100

Different enhancer classes in Drosophila bind distinct architectural proteins and mediate unique chromatin interactions and 3D architecture.
Caelin Cubeñas-Potts, M Jordan Rowley, Xiaowen Lyu, Ge Li, Elissa P Lei, Victor G Corces. Nucleic Acids Res 2017
67
66


Chromatin immunoprecipitation indirect peaks highlight long-range interactions of insulator proteins and Pol II pausing.
Jun Liang, Laurent Lacroix, Adrien Gamot, Suresh Cuddapah, Sophie Queille, Priscillia Lhoumaud, Pierre Lepetit, Pascal G P Martin, Jutta Vogelmann, Franck Court,[...]. Mol Cell 2014
60
66

N-terminal domain of the architectural protein CTCF has similar structural organization and ability to self-association in bilaterian organisms.
Artem Bonchuk, Sofia Kamalyan, Sofia Mariasina, Konstantin Boyko, Vladimir Popov, Oksana Maksimenko, Pavel Georgiev. Sci Rep 2020
9
66

Chromatin insulator factors involved in long-range DNA interactions and their role in the folding of the Drosophila genome.
Jutta Vogelmann, Antoine Le Gall, Stephanie Dejardin, Frederic Allemand, Adrien Gamot, Gilles Labesse, Olivier Cuvier, Nicolas Nègre, Martin Cohen-Gonsaud, Emmanuel Margeat,[...]. PLoS Genet 2014
60
66

Proximity-dependent biotin labelling reveals CP190 as an EcR/Usp molecular partner.
Marina Yu Mazina, Rustam H Ziganshin, Mikhail D Magnitov, Anton K Golovnin, Nadezhda E Vorobyeva. Sci Rep 2020
9
66

Ectopically tethered CP190 induces large-scale chromatin decondensation.
Sajad H Ahanger, Katharina Günther, Oliver Weth, Marek Bartkuhn, Ramesh R Bhonde, Yogesh S Shouche, Rainer Renkawitz. Sci Rep 2014
14
66

Opbp is a new architectural/insulator protein required for ribosomal gene expression.
Nikolay Zolotarev, Oksana Maksimenko, Olga Kyrchanova, Elena Sokolinskaya, Igor Osadchiy, Charles Girardot, Artem Bonchuk, Lucia Ciglar, Eileen E M Furlong, Pavel Georgiev. Nucleic Acids Res 2017
15
66

Functional role of dimerization and CP190 interacting domains of CTCF protein in Drosophila melanogaster.
Artem Bonchuk, Oksana Maksimenko, Olga Kyrchanova, Tatyana Ivlieva, Vladic Mogila, Girish Deshpande, Daniel Wolle, Paul Schedl, Pavel Georgiev. BMC Biol 2015
42
66

Interactions between BTB domain of CP190 and two adjacent regions in Su(Hw) are required for the insulator complex formation.
Larisa Melnikova, Margarita Kostyuchenko, Varvara Molodina, Alexander Parshikov, Pavel Georgiev, Anton Golovnin. Chromosoma 2018
9
66

Active promoters and insulators are marked by the centrosomal protein 190.
Marek Bartkuhn, Tobias Straub, Martin Herold, Mareike Herrmann, Christina Rathke, Harald Saumweber, Gregor D Gilfillan, Peter B Becker, Rainer Renkawitz. EMBO J 2009
114
66

The chromatin insulator CTCF and the emergence of metazoan diversity.
Peter Heger, Birger Marin, Marek Bartkuhn, Einhard Schierenberg, Thomas Wiehe. Proc Natl Acad Sci U S A 2012
99
66

Small Drosophila zinc finger C2H2 protein with an N-terminal zinc finger-associated domain demonstrates the architecture functions.
Oksana Maksimenko, Olga Kyrchanova, Natalia Klimenko, Nikolay Zolotarev, Anna Elizarova, Artem Bonchuk, Pavel Georgiev. Biochim Biophys Acta Gene Regul Mech 2020
7
66

Sequence and structural analysis of BTB domain proteins.
Peter J Stogios, Gregory S Downs, Jimmy J S Jauhal, Sukhjeen K Nandra, Gilbert G Privé. Genome Biol 2005
436
66

Functional dissection of the developmentally restricted BEN domain chromatin boundary factor Insensitive.
Anna Fedotova, Chaevia Clendinen, Artem Bonchuk, Vladic Mogila, Tsutomu Aoki, Pavel Georgiev, Paul Schedl. Epigenetics Chromatin 2019
7
33

The Role of Insulation in Patterning Gene Expression.
Isa Özdemir, Maria Cristina Gambetta. Genes (Basel) 2019
8
33

Distinct Roles of Chromatin Insulator Proteins in Control of the Drosophila Bithorax Complex.
Mikhail Savitsky, Maria Kim, Oksana Kravchuk, Yuri B Schwartz. Genetics 2016
16
33

Clustered CTCF binding is an evolutionary mechanism to maintain topologically associating domains.
Elissavet Kentepozidou, Sarah J Aitken, Christine Feig, Klara Stefflova, Ximena Ibarra-Soria, Duncan T Odom, Maša Roller, Paul Flicek. Genome Biol 2020
29
33

Genome wide ChIP-chip analyses reveal important roles for CTCF in Drosophila genome organization.
Sheryl T Smith, Priyankara Wickramasinghe, Andrew Olson, Dmitri Loukinov, Lan Lin, Joy Deng, Yanping Xiong, John Rux, Ravi Sachidanandam, Hao Sun,[...]. Dev Biol 2009
55
33

ChIPpeakAnno: a Bioconductor package to annotate ChIP-seq and ChIP-chip data.
Lihua J Zhu, Claude Gazin, Nathan D Lawson, Hervé Pagès, Simon M Lin, David S Lapointe, Michael R Green. BMC Bioinformatics 2010
484
33

Emerging Evidence of Chromosome Folding by Loop Extrusion.
Geoffrey Fudenberg, Nezar Abdennur, Maxim Imakaev, Anton Goloborodko, Leonid A Mirny. Cold Spring Harb Symp Quant Biol 2017
101
33

Enhancer long-range contacts: The multi-adaptor protein LDB1 is the tie that binds.
Guoyou Liu, Ann Dean. Biochim Biophys Acta Gene Regul Mech 2019
16
33

Regulation of chromatin organization and inducible gene expression by a Drosophila insulator.
Ashley M Wood, Kevin Van Bortle, Edward Ramos, Naomi Takenaka, Margaret Rohrbaugh, Brian C Jones, Keith C Jones, Victor G Corces. Mol Cell 2011
79
33

The open for business model of the bithorax complex in Drosophila.
Robert K Maeda, François Karch. Chromosoma 2015
40
33

Three-dimensional folding and functional organization principles of the Drosophila genome.
Tom Sexton, Eitan Yaffe, Ephraim Kenigsberg, Frédéric Bantignies, Benjamin Leblanc, Michael Hoichman, Hugues Parrinello, Amos Tanay, Giacomo Cavalli. Cell 2012
33

Selective interactions of boundaries with upstream region of Abd-B promoter in Drosophila bithorax complex and role of dCTCF in this process.
Olga Kyrchanova, Tatiana Ivlieva, Stepan Toshchakov, Alexander Parshikov, Oksana Maksimenko, Pavel Georgiev. Nucleic Acids Res 2011
33
33

Common and distinct DNA-binding and regulatory activities of the BEN-solo transcription factor family.
Qi Dai, Aiming Ren, Jakub O Westholm, Hong Duan, Dinshaw J Patel, Eric C Lai. Genes Dev 2015
23
33


Deep and wide digging for binding motifs in ChIP-Seq data.
I V Kulakovskiy, V A Boeva, A V Favorov, V J Makeev. Bioinformatics 2010
99
33


Optimized CRISPR/Cas tools for efficient germline and somatic genome engineering in Drosophila.
Fillip Port, Hui-Min Chen, Tzumin Lee, Simon L Bullock. Proc Natl Acad Sci U S A 2014
481
33

The structural basis for cohesin-CTCF-anchored loops.
Yan Li, Judith H I Haarhuis, Ángela Sedeño Cacciatore, Roel Oldenkamp, Marjon S van Ruiten, Laureen Willems, Hans Teunissen, Kyle W Muir, Elzo de Wit, Benjamin D Rowland,[...]. Nature 2020
77
33

deepTools: a flexible platform for exploring deep-sequencing data.
Fidel Ramírez, Friederike Dündar, Sarah Diehl, Björn A Grüning, Thomas Manke. Nucleic Acids Res 2014
961
33

RNAi-independent role for Argonaute2 in CTCF/CP190 chromatin insulator function.
Nellie Moshkovich, Parul Nisha, Patrick J Boyle, Brandi A Thompson, Ryan K Dale, Elissa P Lei. Genes Dev 2011
86
33


CTCF is conserved from Drosophila to humans and confers enhancer blocking of the Fab-8 insulator.
Hanlim Moon, Galina Filippova, Dmitry Loukinov, Elena Pugacheva, Qi Chen, Sheryl T Smith, Adam Munhall, Britta Grewe, Marek Bartkuhn, Rüdiger Arnold,[...]. EMBO Rep 2005
183
33

The ABC of the BX-C: the bithorax complex explained.
Robert K Maeda, François Karch. Development 2006
125
33


Ibf1 and Ibf2 are novel CP190-interacting proteins required for insulator function.
Sergi Cuartero, Ujué Fresán, Oscar Reina, Evarist Planet, M Lluisa Espinàs. EMBO J 2014
40
33


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.