A citation-based method for searching scientific literature

Jiazhen Shen, Dhaval Varshney, Angela Simeone, Xiaoyun Zhang, Santosh Adhikari, David Tannahill, Shankar Balasubramanian. Genome Biol 2021
Times Cited: 8







List of co-cited articles
124 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Replication of G Quadruplex DNA.
Leticia Koch Lerner, Julian E Sale. Genes (Basel) 2019
59
62

Single-molecule visualization of DNA G-quadruplex formation in live cells.
Marco Di Antonio, Aleks Ponjavic, Antanas Radzevičius, Rohan T Ranasinghe, Marco Catalano, Xiaoyun Zhang, Jiazhen Shen, Lisa-Maria Needham, Steven F Lee, David Klenerman,[...]. Nat Chem 2020
70
62

G-quadruplex structures mark human regulatory chromatin.
Robert Hänsel-Hertsch, Dario Beraldi, Stefanie V Lensing, Giovanni Marsico, Katherine Zyner, Aled Parry, Marco Di Antonio, Jeremy Pike, Hiroshi Kimura, Masashi Narita,[...]. Nat Genet 2016
353
62

DNA G-quadruplexes in the human genome: detection, functions and therapeutic potential.
Robert Hänsel-Hertsch, Marco Di Antonio, Shankar Balasubramanian. Nat Rev Mol Cell Biol 2017
380
50

Quantitative visualization of DNA G-quadruplex structures in human cells.
Giulia Biffi, David Tannahill, John McCafferty, Shankar Balasubramanian. Nat Chem 2013
50

High-throughput sequencing of DNA G-quadruplex structures in the human genome.
Vicki S Chambers, Giovanni Marsico, Jonathan M Boutell, Marco Di Antonio, Geoffrey P Smith, Shankar Balasubramanian. Nat Biotechnol 2015
537
50

Prevalence of quadruplexes in the human genome.
Julian L Huppert, Shankar Balasubramanian. Nucleic Acids Res 2005
50

Whole genome experimental maps of DNA G-quadruplexes in multiple species.
Giovanni Marsico, Vicki S Chambers, Aleksandr B Sahakyan, Patrick McCauley, Jonathan M Boutell, Marco Di Antonio, Shankar Balasubramanian. Nucleic Acids Res 2019
107
50

G-quadruplexes are transcription factor binding hubs in human chromatin.
Jochen Spiegel, Sergio Martínez Cuesta, Santosh Adhikari, Robert Hänsel-Hertsch, David Tannahill, Shankar Balasubramanian. Genome Biol 2021
14
50

The regulation and functions of DNA and RNA G-quadruplexes.
Dhaval Varshney, Jochen Spiegel, Katherine Zyner, David Tannahill, Shankar Balasubramanian. Nat Rev Mol Cell Biol 2020
178
50

Genome-wide mapping of endogenous G-quadruplex DNA structures by chromatin immunoprecipitation and high-throughput sequencing.
Robert Hänsel-Hertsch, Jochen Spiegel, Giovanni Marsico, David Tannahill, Shankar Balasubramanian. Nat Protoc 2018
80
37

Quadruplex DNA: sequence, topology and structure.
Sarah Burge, Gary N Parkinson, Pascale Hazel, Alan K Todd, Stephen Neidle. Nucleic Acids Res 2006
37

Anticancer activity of CX-3543: a direct inhibitor of rRNA biogenesis.
Denis Drygin, Adam Siddiqui-Jain, Sean O'Brien, Michael Schwaebe, Amy Lin, Josh Bliesath, Caroline B Ho, Chris Proffitt, Katy Trent, Jeffrey P Whitten,[...]. Cancer Res 2009
333
37

Small-molecule-induced DNA damage identifies alternative DNA structures in human genes.
Raphaël Rodriguez, Kyle M Miller, Josep V Forment, Charles R Bradshaw, Mehran Nikan, Sébastien Britton, Tobias Oelschlaegel, Blerta Xhemalce, Shankar Balasubramanian, Stephen P Jackson. Nat Chem Biol 2012
405
37

The Structure and Function of DNA G-Quadruplexes.
Jochen Spiegel, Santosh Adhikari, Shankar Balasubramanian. Trends Chem 2020
140
37

Visualization and selective chemical targeting of RNA G-quadruplex structures in the cytoplasm of human cells.
Giulia Biffi, Marco Di Antonio, David Tannahill, Shankar Balasubramanian. Nat Chem 2014
336
37

rG4-seq reveals widespread formation of G-quadruplex structures in the human transcriptome.
Chun Kit Kwok, Giovanni Marsico, Aleksandr B Sahakyan, Vicki S Chambers, Shankar Balasubramanian. Nat Methods 2016
168
37

CX-5461 is a DNA G-quadruplex stabilizer with selective lethality in BRCA1/2 deficient tumours.
Hong Xu, Marco Di Antonio, Steven McKinney, Veena Mathew, Brandon Ho, Nigel J O'Neil, Nancy Dos Santos, Jennifer Silvester, Vivien Wei, Jessica Garcia,[...]. Nat Commun 2017
209
37

G-quadruplexes and helicases.
Oscar Mendoza, Anne Bourdoncle, Jean-Baptiste Boulé, Robert M Brosh, Jean-Louis Mergny. Nucleic Acids Res 2016
217
37



Direct evidence for a G-quadruplex in a promoter region and its targeting with a small molecule to repress c-MYC transcription.
Adam Siddiqui-Jain, Cory L Grand, David J Bearss, Laurence H Hurley. Proc Natl Acad Sci U S A 2002
37

G-quadruplex DNA drives genomic instability and represents a targetable molecular abnormality in ATRX-deficient malignant glioma.
Yuxiang Wang, Jie Yang, Aaron T Wild, Wei H Wu, Rachna Shah, Carla Danussi, Gregory J Riggins, Kasthuri Kannan, Erik P Sulman, Timothy A Chan,[...]. Nat Commun 2019
60
37

G-Quadruplexes: More Than Just a Kink in Microbial Genomes.
Nandhini Saranathan, Perumal Vivekanandan. Trends Microbiol 2019
47
37

G-Quadruplexes at Telomeres: Friend or Foe?
Tracy M Bryan. Molecules 2020
20
37

The G4 genome.
Nancy Maizels, Lucas T Gray. PLoS Genet 2013
316
37

How to untie G-quadruplex knots and why?
Pauline Lejault, Jérémie Mitteaux, Francesco Rota Sperti, David Monchaud. Cell Chem Biol 2021
9
37

The expanding repertoire of G4 DNA structures.
Anna Varizhuk, Dmitry Ischenko, Vladimir Tsvetkov, Roman Novikov, Nikolay Kulemin, Dmitry Kaluzhny, Maria Vlasenok, Vladimir Naumov, Igor Smirnov, Galina Pozmogova. Biochimie 2017
40
25

Probing the G‑quadruplex from hsa-miR-3620-5p and inhibition of its interaction with the target sequence.
Wei Tan, Jiang Zhou, Jiangyong Gu, Ming Xu, Xiaojie Xu, Gu Yuan. Talanta 2016
19
25

Amino-Acid-Derived Naphthalenediimides as Versatile G-Quadruplex Binders.
Dora M Răsădean, Bin Sheng, Jyotirmayee Dash, G Dan Pantoş. Chemistry 2017
15
25

Towards the Development of Structure-Selective G-Quadruplex-Binding Indolo[3,2-b]quinolines.
Andrea Funke, Jonathan Dickerhoff, Klaus Weisz. Chemistry 2016
21
25

Solution structure of a G-quadruplex bound to the bisquinolinium compound Phen-DC(3).
Wan Jun Chung, Brahim Heddi, Florian Hamon, Marie-Paule Teulade-Fichou, Anh Tuân Phan. Angew Chem Int Ed Engl 2014
113
25

Structure-based design of selective and potent G quadruplex-mediated telomerase inhibitors.
M Read, R J Harrison, B Romagnoli, F A Tanious, S H Gowan, A P Reszka, W D Wilson, L R Kelland, S Neidle. Proc Natl Acad Sci U S A 2001
338
25

Small Molecule Microarrays Enable the Identification of a Selective, Quadruplex-Binding Inhibitor of MYC Expression.
Kenneth M Felsenstein, Lindsey B Saunders, John K Simmons, Elena Leon, David R Calabrese, Shuling Zhang, Aleksandra Michalowski, Peter Gareiss, Beverly A Mock, John S Schneekloth. ACS Chem Biol 2016
81
25

A Small Molecule That Represses Translation of G-Quadruplex-Containing mRNA.
Yousuke Katsuda, Shin-Ichi Sato, Lisa Asano, Yoshitaka Morimura, Tomoyuki Furuta, Hiroshi Sugiyama, Masaki Hagihara, Motonari Uesugi. J Am Chem Soc 2016
38
25

A comparison of DNA and RNA quadruplex structures and stabilities.
Astrid Joachimi, Armin Benz, Jörg S Hartig. Bioorg Med Chem 2009
129
25

Targeting G-quadruplexes in gene promoters: a novel anticancer strategy?
Shankar Balasubramanian, Laurence H Hurley, Stephen Neidle. Nat Rev Drug Discov 2011
25

Restoration of miRNA-149 Expression by TmPyP4 Induced Unfolding of Quadruplex within Its Precursor.
Arpita Ghosh, Mary Krishna Ekka, Arpita Tawani, Amit Kumar, Debojyoti Chakraborty, Souvik Maiti. Biochemistry 2019
10
25

Targeting Multiple Effector Pathways in Pancreatic Ductal Adenocarcinoma with a G-Quadruplex-Binding Small Molecule.
Chiara Marchetti, Katherine G Zyner, Stephan A Ohnmacht, Mathew Robson, Shozeb M Haider, Jennifer P Morton, Giovanni Marsico, Tam Vo, Sarah Laughlin-Toth, Ahmed A Ahmed,[...]. J Med Chem 2018
58
25

Protein hnRNP A1 and its derivative Up1 unfold quadruplex DNA in the human KRAS promoter: implications for transcription.
Manikandan Paramasivam, Alexandro Membrino, Susanna Cogoi, Hirokazu Fukuda, Hitoshi Nakagama, Luigi E Xodo. Nucleic Acids Res 2009
105
25

NMR spectroscopy of G-quadruplexes.
Michael Adrian, Brahim Heddi, Anh Tuân Phan. Methods 2012
156
25


Macrocyclic naphthalene diimides as G-quadruplex binders.
Chiara Marchetti, Anna Minarini, Vincenzo Tumiatti, Federica Moraca, Lucia Parrotta, Stefano Alcaro, Riccardo Rigo, Claudia Sissi, Mekala Gunaratnam, Stephan A Ohnmacht,[...]. Bioorg Med Chem 2015
23
25

Permanganate/S1 Nuclease Footprinting Reveals Non-B DNA Structures with Regulatory Potential across a Mammalian Genome.
Fedor Kouzine, Damian Wojtowicz, Laura Baranello, Arito Yamane, Steevenson Nelson, Wolfgang Resch, Kyong-Rim Kieffer-Kwon, Craig J Benham, Rafael Casellas, Teresa M Przytycka,[...]. Cell Syst 2017
76
25

Inhibition of human telomerase by a G-quadruplex-interactive compound.
D Sun, B Thompson, B E Cathers, M Salazar, S M Kerwin, J O Trent, T C Jenkins, S Neidle, L H Hurley. J Med Chem 1997
581
25

Fluorescent light-up acridine orange derivatives bind and stabilize KRAS-22RT G-quadruplex.
Josué Carvalho, Edgar Pereira, Julien Marquevielle, Maria P C Campello, Jean-Louis Mergny, António Paulo, Gilmar F Salgado, João A Queiroz, Carla Cruz. Biochimie 2018
24
25

Synthesis, G-quadruplex stabilisation, docking studies, and effect on cancer cells of indolo[3,2-b]quinolines with one, two, or three basic side chains.
João Lavrado, Pedro M Borralho, Stephan A Ohnmacht, Rui E Castro, Cecília M P Rodrigues, Rui Moreira, Daniel J V A dos Santos, Stephen Neidle, Alexandra Paulo. ChemMedChem 2013
25
25

KRAS oncogene repression in colon cancer cell lines by G-quadruplex binding indolo[3,2-c]quinolines.
João Lavrado, Hugo Brito, Pedro M Borralho, Stephan A Ohnmacht, Nam-Soon Kim, Clara Leitão, Sílvia Pisco, Mekala Gunaratnam, Cecília M P Rodrigues, Rui Moreira,[...]. Sci Rep 2015
47
25

Identification of G-Quadruplex-Binding Inhibitors of Myc Expression through Affinity Selection-Mass Spectrometry.
Deborah A Flusberg, Noreen F Rizvi, Victoria Kutilek, Christine Andrews, Peter Saradjian, Chad Chamberlin, Patrick Curran, Brooke Swalm, Sam Kattar, Graham F Smith,[...]. SLAS Discov 2019
9
25

Specific targeting of telomeric multimeric G-quadruplexes by a new triaryl-substituted imidazole.
Ming-Hao Hu, Shuo-Bin Chen, Bo Wang, Tian-Miao Ou, Lian-Quan Gu, Jia-Heng Tan, Zhi-Shu Huang. Nucleic Acids Res 2017
46
25


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.