A citation-based method for searching scientific literature

Christine M Kondratick, M Todd Washington, Maria Spies. Semin Cell Dev Biol 2021
Times Cited: 9







List of co-cited articles
25 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Making choices: DNA replication fork recovery mechanisms.
Christine M Kondratick, M Todd Washington, Maria Spies. Semin Cell Dev Biol 2020
7
100

Replication fork reversal in eukaryotes: from dead end to dynamic response.
Kai J Neelsen, Massimo Lopes. Nat Rev Mol Cell Biol 2015
296
33

Rad51-mediated replication fork reversal is a global response to genotoxic treatments in human cells.
Ralph Zellweger, Damian Dalcher, Karun Mutreja, Matteo Berti, Jonas A Schmid, Raquel Herrador, Alessandro Vindigni, Massimo Lopes. J Cell Biol 2015
398
33


PCNA tool belts and polymerase bridges form during translesion synthesis.
Elizabeth M Boehm, Maria Spies, M Todd Washington. Nucleic Acids Res 2016
37
22

Control of DNA Damage Bypass by Ubiquitylation of PCNA.
Brittany M Ripley, Melissa S Gildenberg, M Todd Washington. Genes (Basel) 2020
23
22

Chronic p53-independent p21 expression causes genomic instability by deregulating replication licensing.
Panagiotis Galanos, Konstantinos Vougas, David Walter, Alexander Polyzos, Apolinar Maya-Mendoza, Emma J Haagensen, Antonis Kokkalis, Fani-Marlen Roumelioti, Sarantis Gagos, Maria Tzetis,[...]. Nat Cell Biol 2016
170
22

Causes and consequences of replication stress.
Michelle K Zeman, Karlene A Cimprich. Nat Cell Biol 2014
22

ATM and ATR substrate analysis reveals extensive protein networks responsive to DNA damage.
Shuhei Matsuoka, Bryan A Ballif, Agata Smogorzewska, E Robert McDonald, Kristen E Hurov, Ji Luo, Corey E Bakalarski, Zhenming Zhao, Nicole Solimini, Yaniv Lerenthal,[...]. Science 2007
22



RADX controls RAD51 filament dynamics to regulate replication fork stability.
Madison B Adolph, Taha M Mohamed, Swati Balakrishnan, Chaoyou Xue, Florian Morati, Mauro Modesti, Eric C Greene, Walter J Chazin, David Cortez. Mol Cell 2021
8
25

Single-Strand Annealing in Cancer.
Janusz Blasiak. Int J Mol Sci 2021
7
28

53BP1 fosters fidelity of homology-directed DNA repair.
Fena Ochs, Kumar Somyajit, Matthias Altmeyer, Maj-Britt Rask, Jiri Lukas, Claudia Lukas. Nat Struct Mol Biol 2016
150
22

53BP1 nuclear bodies enforce replication timing at under-replicated DNA to limit heritable DNA damage.
Julian Spies, Claudia Lukas, Kumar Somyajit, Maj-Britt Rask, Jiri Lukas, Kai John Neelsen. Nat Cell Biol 2019
50
22

DNA double-strand break repair-pathway choice in somatic mammalian cells.
Ralph Scully, Arvind Panday, Rajula Elango, Nicholas A Willis. Nat Rev Mol Cell Biol 2019
464
22

Recombination and restart at blocked replication forks.
Ralph Scully, Rajula Elango, Arvind Panday, Nicholas A Willis. Curr Opin Genet Dev 2021
8
25

Replication fork reversal triggers fork degradation in BRCA2-defective cells.
Sofija Mijic, Ralph Zellweger, Nagaraja Chappidi, Matteo Berti, Kurt Jacobs, Karun Mutreja, Sebastian Ursich, Arnab Ray Chaudhuri, Andre Nussenzweig, Pavel Janscak,[...]. Nat Commun 2017
190
22

A genetic study of x-ray sensitive mutants in yeast.
J C Game, R K Mortimer. Mutat Res 1974
406
22

Restoration of Replication Fork Stability in BRCA1- and BRCA2-Deficient Cells by Inactivation of SNF2-Family Fork Remodelers.
Angelo Taglialatela, Silvia Alvarez, Giuseppe Leuzzi, Vincenzo Sannino, Lepakshi Ranjha, Jen-Wei Huang, Chioma Madubata, Roopesh Anand, Brynn Levy, Raul Rabadan,[...]. Mol Cell 2017
194
22

The Safe Path at the Fork: Ensuring Replication-Associated DNA Double-Strand Breaks are Repaired by Homologous Recombination.
Jac A Nickoloff, Neelam Sharma, Lynn Taylor, Sage J Allen, Robert Hromas. Front Genet 2021
6
33

MRE11 and EXO1 nucleases degrade reversed forks and elicit MUS81-dependent fork rescue in BRCA2-deficient cells.
Delphine Lemaçon, Jessica Jackson, Annabel Quinet, Joshua R Brickner, Shan Li, Stephanie Yazinski, Zhongsheng You, Grzegorz Ira, Lee Zou, Nima Mosammaparast,[...]. Nat Commun 2017
206
22

Checkpoint Responses to DNA Double-Strand Breaks.
David P Waterman, James E Haber, Marcus B Smolka. Annu Rev Biochem 2020
40
22

Replication Fork Slowing and Reversal upon DNA Damage Require PCNA Polyubiquitination and ZRANB3 DNA Translocase Activity.
Marko Vujanovic, Jana Krietsch, Maria Chiara Raso, Nastassja Terraneo, Ralph Zellweger, Jonas A Schmid, Angelo Taglialatela, Jen-Wei Huang, Cory L Holland, Katharina Zwicky,[...]. Mol Cell 2017
130
22

The Mgs1/WRNIP1 ATPase is required to prevent a recombination salvage pathway at damaged replication forks.
Alberto Jiménez-Martín, Irene Saugar, Chinnu Rose Joseph, Alexandra Mayer, Carl P Lehmann, Barnabas Szakal, Dana Branzei, José Antonio Tercero. Sci Adv 2020
8
25

Probing cellular protein complexes using single-molecule pull-down.
Ankur Jain, Ruijie Liu, Biswarathan Ramani, Edwin Arauz, Yuji Ishitsuka, Kaushik Ragunathan, Jeehae Park, Jie Chen, Yang K Xiang, Taekjip Ha. Nature 2011
266
11

Initial state of DNA-Dye complex sets the stage for protein induced fluorescence modulation.
Fahad Rashid, Vlad-Stefan Raducanu, Manal S Zaher, Muhammad Tehseen, Satoshi Habuchi, Samir M Hamdan. Nat Commun 2019
26
11



Ordered and dynamic assembly of single spliceosomes.
Aaron A Hoskins, Larry J Friedman, Sarah S Gallagher, Daniel J Crawford, Eric G Anderson, Richard Wombacher, Nicholas Ramirez, Virginia W Cornish, Jeff Gelles, Melissa J Moore. Science 2011
204
11

A practical guide to single-molecule FRET.
Rahul Roy, Sungchul Hohng, Taekjip Ha. Nat Methods 2008
11

The involvement of nucleotide excision repair proteins in the removal of oxidative DNA damage.
Namrata Kumar, Sripriya Raja, Bennett Van Houten. Nucleic Acids Res 2020
42
11

Reliable State Identification and State Transition Detection in Fluorescence Intensity-Based Single-Molecule Förster Resonance Energy-Transfer Data.
Mélodie C A S Hadzic, Richard Börner, Sebastian L B König, Danny Kowerko, Roland K O Sigel. J Phys Chem B 2018
18
11

High-throughput platform for real-time monitoring of biological processes by multicolor single-molecule fluorescence.
Jin Chen, Ravindra V Dalal, Alexey N Petrov, Albert Tsai, Seán E O'Leary, Karen Chapin, Janice Cheng, Mark Ewan, Pei-Lin Hsiung, Paul Lundquist,[...]. Proc Natl Acad Sci U S A 2014
78
11


Analysis of single-molecule FRET trajectories using hidden Markov modeling.
Sean A McKinney, Chirlmin Joo, Taekjip Ha. Biophys J 2006
508
11


Functional dynamics in replication protein A DNA binding and protein recruitment domains.
Chris A Brosey, Sarah E Soss, Sonja Brooks, Chunli Yan, Ivaylo Ivanov, Kavita Dorai, Walter J Chazin. Structure 2015
22
11

Quantitative transcription factor binding kinetics at the single-molecule level.
Yufang Wang, Ling Guo, Ido Golding, Edward C Cox, N P Ong. Biophys J 2009
43
11

Bridging conformational dynamics and function using single-molecule spectroscopy.
Sua Myong, Benjamin C Stevens, Taekjip Ha. Structure 2006
41
11

The complete structure of the human TFIIH core complex.
Basil J Greber, Daniel B Toso, Jie Fang, Eva Nogales. Elife 2019
58
11

Learning rates and states from biophysical time series: a Bayesian approach to model selection and single-molecule FRET data.
Jonathan E Bronson, Jingyi Fei, Jake M Hofman, Ruben L Gonzalez, Chris H Wiggins. Biophys J 2009
238
11

Physiological and Pathological Roles of RAD52 at DNA Replication Forks.
Eva Malacaria, Masayoshi Honda, Annapaola Franchitto, Maria Spies, Pietro Pichierri. Cancers (Basel) 2020
12
11


Molecular basis for damage recognition and verification by XPC-RAD23B and TFIIH in nucleotide excision repair.
Hong Mu, Nicholas E Geacintov, Suse Broyde, Jung-Eun Yeo, Orlando D Schärer. DNA Repair (Amst) 2018
39
11

Nucleotide excision repair in eukaryotes.
Orlando D Schärer. Cold Spring Harb Perspect Biol 2013
444
11

Global analysis of protein expression in yeast.
Sina Ghaemmaghami, Won-Ki Huh, Kiowa Bower, Russell W Howson, Archana Belle, Noah Dephoure, Erin K O'Shea, Jonathan S Weissman. Nature 2003
11

An updated perspective on the polymerase division of labor during eukaryotic DNA replication.
Thomas A Guilliam, Joseph T P Yeeles. Crit Rev Biochem Mol Biol 2020
16
11

Life under the Microscope: Single-Molecule Fluorescence Highlights the RNA World.
Sujay Ray, Julia R Widom, Nils G Walter. Chem Rev 2018
30
11



Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.