A citation-based method for searching scientific literature

R Prabakaran, Puneet Rawat, Sandeep Kumar, M Michael Gromiha. J Mol Biol 2021
Times Cited: 8







List of co-cited articles
32 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Prediction of aggregation rate and aggregation-prone segments in polypeptide sequences.
Gian Gaetano Tartaglia, Andrea Cavalli, Riccardo Pellarin, Amedeo Caflisch. Protein Sci 2005
161
62

Prediction of sequence-dependent and mutational effects on the aggregation of peptides and proteins.
Ana-Maria Fernandez-Escamilla, Frederic Rousseau, Joost Schymkowitz, Luis Serrano. Nat Biotechnol 2004
50

AGGRESCAN: a server for the prediction and evaluation of "hot spots" of aggregation in polypeptides.
Oscar Conchillo-Solé, Natalia S de Groot, Francesc X Avilés, Josep Vendrell, Xavier Daura, Salvador Ventura. BMC Bioinformatics 2007
616
50


AggScore: Prediction of aggregation-prone regions in proteins based on the distribution of surface patches.
Kannan Sankar, Stanley R Krystek, Stephen M Carl, Tyler Day, Johannes K X Maier. Proteins 2018
39
37

CPAD 2.0: a repository of curated experimental data on aggregating proteins and peptides.
Puneet Rawat, R Prabakaran, R Sakthivel, A Mary Thangakani, Sandeep Kumar, M Michael Gromiha. Amyloid 2020
13
37

Exploring the sequence determinants of amyloid structure using position-specific scoring matrices.
Sebastian Maurer-Stroh, Maja Debulpaep, Nico Kuemmerer, Manuela Lopez de la Paz, Ivo Cristiano Martins, Joke Reumers, Kyle L Morris, Alastair Copland, Louise Serpell, Luis Serrano,[...]. Nat Methods 2010
424
37

GAP: towards almost 100 percent prediction for β-strand-mediated aggregating peptides with distinct morphologies.
A Mary Thangakani, Sandeep Kumar, R Nagarajan, D Velmurugan, M Michael Gromiha. Bioinformatics 2014
33
37

RFAmyloid: A Web Server for Predicting Amyloid Proteins.
Mengting Niu, Yanjuan Li, Chunyu Wang, Ke Han. Int J Mol Sci 2018
19
37

Prediction and analysis of antibody amyloidogenesis from sequences.
Chyn Liaw, Chun-Wei Tung, Shinn-Ying Ho. PLoS One 2013
17
37

Aggrescan3D (A3D) 2.0: prediction and engineering of protein solubility.
Aleksander Kuriata, Valentin Iglesias, Jordi Pujols, Mateusz Kurcinski, Sebastian Kmiecik, Salvador Ventura. Nucleic Acids Res 2019
40
37

Prediction of aggregation-prone regions in structured proteins.
Gian Gaetano Tartaglia, Amol P Pawar, Silvia Campioni, Christopher M Dobson, Fabrizio Chiti, Michele Vendruscolo. J Mol Biol 2008
333
25

Driving Forces for Nonnative Protein Aggregation and Approaches to Predict Aggregation-Prone Regions.
Gulsum Meric, Anne S Robinson, Christopher J Roberts. Annu Rev Chem Biomol Eng 2017
36
25

Solubis: a webserver to reduce protein aggregation through mutation.
Joost Van Durme, Greet De Baets, Rob Van Der Kant, Meine Ramakers, Ashok Ganesan, Hannah Wilkinson, Rodrigo Gallardo, Frederic Rousseau, Joost Schymkowitz. Protein Eng Des Sel 2016
38
25

Aggregation in protein-based biotherapeutics: computational studies and tools to identify aggregation-prone regions.
Neeraj J Agrawal, Sandeep Kumar, Xiaoling Wang, Bernhard Helk, Satish K Singh, Bernhardt L Trout. J Pharm Sci 2011
92
25

AGGRESCAN3D: Toward the Prediction of the Aggregation Propensities of Protein Structures.
Jordi Pujols, Samuel Peña-Díaz, Salvador Ventura. Methods Mol Biol 2018
10
25


Using simple artificial intelligence methods for predicting amyloidogenesis in antibodies.
Maria Pamela C David, Gisela P Concepcion, Eduardo A Padlan. BMC Bioinformatics 2010
28
25

FoldAmyloid: a method of prediction of amyloidogenic regions from protein sequence.
Sergiy O Garbuzynskiy, Michail Yu Lobanov, Oxana V Galzitskaya. Bioinformatics 2010
237
25

AbsoluRATE: An in-silico method to predict the aggregation kinetics of native proteins.
Puneet Rawat, R Prabakaran, Sandeep Kumar, M Michael Gromiha. Biochim Biophys Acta Proteins Proteom 2021
3
66

Developability index: a rapid in silico tool for the screening of antibody aggregation propensity.
Timothy M Lauer, Neeraj J Agrawal, Naresh Chennamsetty, Kamal Egodage, Bernhard Helk, Bernhardt L Trout. J Pharm Sci 2012
110
25

Design of therapeutic proteins with enhanced stability.
Naresh Chennamsetty, Vladimir Voynov, Veysel Kayser, Bernhard Helk, Bernhardt L Trout. Proc Natl Acad Sci U S A 2009
354
25

The CamSol method of rational design of protein mutants with enhanced solubility.
Pietro Sormanni, Francesco A Aprile, Michele Vendruscolo. J Mol Biol 2015
188
25


PredAmyl-MLP: Prediction of Amyloid Proteins Using Multilayer Perceptron.
Yanjuan Li, Zitong Zhang, Zhixia Teng, Xiaoyan Liu. Comput Math Methods Med 2020
6
33

Combining Structural Aggregation Propensity and Stability Predictions To Redesign Protein Solubility.
Marcos Gil-Garcia, Manuel Bañó-Polo, Nathalia Varejão, Michal Jamroz, Aleksander Kuriata, Marta Díaz-Caballero, Jara Lascorz, Bertrand Morel, Susanna Navarro, David Reverter,[...]. Mol Pharm 2018
30
25

Highly accurate protein structure prediction with AlphaFold.
John Jumper, Richard Evans, Alexander Pritzel, Tim Green, Michael Figurnov, Olaf Ronneberger, Kathryn Tunyasuvunakool, Russ Bates, Augustin Žídek, Anna Potapenko,[...]. Nature 2021
25

Accurate prediction of protein beta-aggregation with generalized statistical potentials.
Gabriele Orlando, Alexandra Silva, Sandra Macedo-Ribeiro, Daniele Raimondi, Wim Vranken. Bioinformatics 2020
12
25

AGGRESCAN3D (A3D): server for prediction of aggregation properties of protein structures.
Rafael Zambrano, Michal Jamroz, Agata Szczasiuk, Jordi Pujols, Sebastian Kmiecik, Salvador Ventura. Nucleic Acids Res 2015
130
25

A consensus method for the prediction of 'aggregation-prone' peptides in globular proteins.
Antonios C Tsolis, Nikos C Papandreou, Vassiliki A Iconomidou, Stavros J Hamodrakas. PLoS One 2013
183
25

PASTA 2.0: an improved server for protein aggregation prediction.
Ian Walsh, Flavio Seno, Silvio C E Tosatto, Antonio Trovato. Nucleic Acids Res 2014
213
25

Prediction of amyloid fibril-forming segments based on a support vector machine.
Jian Tian, Ningfeng Wu, Jun Guo, Yunliu Fan. BMC Bioinformatics 2009
64
25

Natural Products for the Treatment of Type 2 Diabetes Mellitus.
José Luis Ríos, Flavio Francini, Guillermo R Schinella. Planta Med 2015
179
12

Flavonoids for controlling starch digestion: structural requirements for inhibiting human alpha-amylase.
Elena Lo Piparo, Holger Scheib, Nathalie Frei, Gary Williamson, Martin Grigorov, Chieh Jason Chou. J Med Chem 2008
189
12

Natural product-based amyloid inhibitors.
Paul Velander, Ling Wu, Frances Henderson, Shijun Zhang, David R Bevan, Bin Xu. Biochem Pharmacol 2017
96
12

Structure and function of anhydride-modified forms of human insulin: In silico, in vitro and in vivo studies.
Maryam Chinisaz, Azadeh Ebrahim-Habibi, Ahmad-Reza Dehpour, Parichehreh Yaghmaei, Kazem Parivar, Ali Akbar Moosavi-Movahedi. Eur J Pharm Sci 2017
7
14

Artificial sweeteners: safe or unsafe?
Qurrat-ul-Ain, Sohaib Ahmed Khan. J Pak Med Assoc 2015
19
12

P-SEA: a new efficient assignment of secondary structure from C alpha trace of proteins.
G Labesse, N Colloc'h, J Pothier, J P Mornon. Comput Appl Biosci 1997
90
12

Alpha-Glucosidase and Alpha-Amylase Inhibitory Activities of Novel Abietane Diterpenes from Salvia africana-lutea.
Ninon G E R Etsassala, Jelili A Badmus, Tesfaye T Waryo, Jeanine L Marnewick, Christopher N Cupido, Ahmed A Hussein, Emmanuel I Iwuoha. Antioxidants (Basel) 2019
16
12

Drug repurposing using computational methods to identify therapeutic options for COVID-19.
Soodeh Mahdian, Azadeh Ebrahim-Habibi, Mahboobeh Zarrabi. J Diabetes Metab Disord 2020
23
12

Indole and trans-chalcone attenuate amyloid β plaque accumulation in male Wistar rat: in vivo effectiveness of two anti-amyloid scaffolds.
Parichehreh Yaghmaei, Raheleh Kheirbakhsh, Mehrooz Dezfulian, Ali Haeri-Rohani, Bagher Larijani, Azadeh Ebrahim-Habibi. Arch Ital Biol 2013
13
12

Effect of trans-chalcone on atheroma plaque formation, liver fibrosis and adiponectin gene expression in cholesterol-fed NMRI mice.
Leyla Karkhaneh, Parichehreh Yaghmaei, Kazem Parivar, Majid Sadeghizadeh, Azadeh Ebrahim-Habibi. Pharmacol Rep 2016
13
12

Modeling the effect of levothyroxine therapy on bone mass density in postmenopausal women: a different approach leads to new inference.
Babak Mohammadi, Vahid Haghpanah, Seyed Mohammad Tavangar, Bagher Larijani. Theor Biol Med Model 2007
9
12

Inhibitory Effects of Solvent-Partitioned Fractions of Two Nigerian Herbs (Spondias mombin Linn. and Mangifera indica L.) on α-Amylase and α-Glucosidase.
Oluwafemi Adeleke Ojo, Adeola Agnes Afon, Adebola Busola Ojo, Basiru Olaitan Ajiboye, Babatunji Emmanuel Oyinloye, Abidemi Paul Kappo. Antioxidants (Basel) 2018
11
12

Inhibition of alpha-glucosidase and alpha-amylase by flavonoids.
Kenjiro Tadera, Yuji Minami, Kouta Takamatsu, Tomoko Matsuoka. J Nutr Sci Vitaminol (Tokyo) 2006
425
12


IDF Diabetes Atlas: Global estimates for the prevalence of diabetes for 2015 and 2040.
K Ogurtsova, J D da Rocha Fernandes, Y Huang, U Linnenkamp, L Guariguata, N H Cho, D Cavan, J E Shaw, L E Makaroff. Diabetes Res Clin Pract 2017
12

Non-caloric sweeteners, sweetness modulators, and sweetener enhancers.
Grant E DuBois, Indra Prakash. Annu Rev Food Sci Technol 2012
81
12

Acarbose: safe and effective for lowering postprandial hyperglycaemia and improving cardiovascular outcomes.
James J DiNicolantonio, Jaikrit Bhutani, James H O'Keefe. Open Heart 2015
63
12

Small molecule probes of protein aggregation.
Lydia M Young, Alison E Ashcroft, Sheena E Radford. Curr Opin Chem Biol 2017
53
12


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.