A citation-based method for searching scientific literature

Satoshi Watanabe, Nikolay S Markov, Ziyan Lu, Raul Piseaux Aillon, Saul Soberanes, Constance E Runyan, Ziyou Ren, Rogan A Grant, Mariana Maciel, Hiam Abdala-Valencia, Yuliya Politanska, Kiwon Nam, Lango Sichizya, Hermon G Kihshen, Nikita Joshi, Alexandra C McQuattie-Pimentel, Katherine A Gruner, Manu Jain, Jacob I Sznajder, Richard I Morimoto, Paul A Reyfman, Cara J Gottardi, G R Scott Budinger, Alexander V Misharin. Proc Natl Acad Sci U S A 2021
Times Cited: 9







List of co-cited articles
42 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Alveolar regeneration through a Krt8+ transitional stem cell state that persists in human lung fibrosis.
Maximilian Strunz, Lukas M Simon, Meshal Ansari, Jaymin J Kathiriya, Ilias Angelidis, Christoph H Mayr, George Tsidiridis, Marius Lange, Laura F Mattner, Min Yee,[...]. Nat Commun 2020
113
55

Single-cell RNA sequencing reveals profibrotic roles of distinct epithelial and mesenchymal lineages in pulmonary fibrosis.
Arun C Habermann, Austin J Gutierrez, Linh T Bui, Stephanie L Yahn, Nichelle I Winters, Carla L Calvi, Lance Peter, Mei-I Chung, Chase J Taylor, Christopher Jetter,[...]. Sci Adv 2020
186
44

Single-cell RNA-seq reveals ectopic and aberrant lung-resident cell populations in idiopathic pulmonary fibrosis.
Taylor S Adams, Jonas C Schupp, Sergio Poli, Ehab A Ayaub, Nir Neumark, Farida Ahangari, Sarah G Chu, Benjamin A Raby, Giuseppe DeIuliis, Michael Januszyk,[...]. Sci Adv 2020
212
44

Progressive Pulmonary Fibrosis Is Caused by Elevated Mechanical Tension on Alveolar Stem Cells.
Huijuan Wu, Yuanyuan Yu, Huanwei Huang, Yucheng Hu, Siling Fu, Zheng Wang, Mengting Shi, Xi Zhao, Jie Yuan, Jiao Li,[...]. Cell 2020
113
44

Persistence of a regeneration-associated, transitional alveolar epithelial cell state in pulmonary fibrosis.
Yoshihiko Kobayashi, Aleksandra Tata, Arvind Konkimalla, Hiroaki Katsura, Rebecca F Lee, Jianhong Ou, Nicholas E Banovich, Jonathan A Kropski, Purushothama Rao Tata. Nat Cell Biol 2020
94
44

Regeneration of the lung alveolus by an evolutionarily conserved epithelial progenitor.
William J Zacharias, David B Frank, Jarod A Zepp, Michael P Morley, Farrah A Alkhaleel, Jun Kong, Su Zhou, Edward Cantu, Edward E Morrisey. Nature 2018
298
33

Partial restoration of protein synthesis rates by the small molecule ISRIB prevents neurodegeneration without pancreatic toxicity.
M Halliday, H Radford, Y Sekine, J Moreno, N Verity, J le Quesne, C A Ortori, D A Barrett, C Fromont, P M Fischer,[...]. Cell Death Dis 2015
181
33

Ineffectual Type 2-to-Type 1 Alveolar Epithelial Cell Differentiation in Idiopathic Pulmonary Fibrosis: Persistence of the KRT8hi Transitional State.
Peng Jiang, Rafael Gil de Rubio, Steven M Hrycaj, Stephen J Gurczynski, Kent A Riemondy, Bethany B Moore, M Bishr Omary, Karen M Ridge, Rachel L Zemans. Am J Respir Crit Care Med 2020
37
33

Lung transplantation for patients with severe COVID-19.
Ankit Bharat, Melissa Querrey, Nikolay S Markov, Samuel Kim, Chitaru Kurihara, Rafael Garza-Castillon, Adwaiy Manerikar, Ali Shilatifard, Rade Tomic, Yuliya Politanska,[...]. Sci Transl Med 2020
106
33

Small molecule ISRIB suppresses the integrated stress response within a defined window of activation.
Huib H Rabouw, Martijn A Langereis, Aditya A Anand, Linda J Visser, Raoul J de Groot, Peter Walter, Frank J M van Kuppeveld. Proc Natl Acad Sci U S A 2019
82
33

ISRIB Blunts the Integrated Stress Response by Allosterically Antagonising the Inhibitory Effect of Phosphorylated eIF2 on eIF2B.
Alisa F Zyryanova, Kazuhiro Kashiwagi, Claudia Rato, Heather P Harding, Ana Crespillo-Casado, Luke A Perera, Ayako Sakamoto, Madoka Nishimoto, Mayumi Yonemochi, Mikako Shirouzu,[...]. Mol Cell 2021
27
33

Single-Cell Transcriptomic Analysis of Human Lung Provides Insights into the Pathobiology of Pulmonary Fibrosis.
Paul A Reyfman, James M Walter, Nikita Joshi, Kishore R Anekalla, Alexandra C McQuattie-Pimentel, Stephen Chiu, Ramiro Fernandez, Mahzad Akbarpour, Ching-I Chen, Ziyou Ren,[...]. Am J Respir Crit Care Med 2019
445
33

Flow cytometric analysis of macrophages and dendritic cell subsets in the mouse lung.
Alexander V Misharin, Luisa Morales-Nebreda, Gökhan M Mutlu, G R Scott Budinger, Harris Perlman. Am J Respir Cell Mol Biol 2013
469
22

Blue journal conference. Aging and susceptibility to lung disease.
Victor J Thannickal, Mahadev Murthy, William E Balch, Navdeep S Chandel, Silke Meiners, Oliver Eickelberg, Moisés Selman, Annie Pardo, Eric S White, Bruce D Levy,[...]. Am J Respir Crit Care Med 2015
108
22

A spatially restricted fibrotic niche in pulmonary fibrosis is sustained by M-CSF/M-CSFR signalling in monocyte-derived alveolar macrophages.
Nikita Joshi, Satoshi Watanabe, Rohan Verma, Renea P Jablonski, Ching-I Chen, Paul Cheresh, Nikolay S Markov, Paul A Reyfman, Alexandra C McQuattie-Pimentel, Lango Sichizya,[...]. Eur Respir J 2020
82
22

Single-cell Wnt signaling niches maintain stemness of alveolar type 2 cells.
Ahmad N Nabhan, Douglas G Brownfield, Pehr B Harbury, Mark A Krasnow, Tushar J Desai. Science 2018
302
22

The small molecule ISRIB rescues the stability and activity of Vanishing White Matter Disease eIF2B mutant complexes.
Yao Liang Wong, Lauren LeBon, Rohinton Edalji, Hock Ben Lim, Chaohong Sun, Carmela Sidrauski. Elife 2018
56
22

Deletion of c-FLIP from CD11bhi Macrophages Prevents Development of Bleomycin-induced Lung Fibrosis.
Alexandra L McCubbrey, Lea Barthel, Michael P Mohning, Elizabeth F Redente, Kara J Mould, Stacey M Thomas, Sonia M Leach, Thomas Danhorn, Sophie L Gibbings, Claudia V Jakubzick,[...]. Am J Respir Cell Mol Biol 2018
76
22

Progress in Understanding and Treating Idiopathic Pulmonary Fibrosis.
Jonathan A Kropski, Timothy S Blackwell. Annu Rev Med 2019
44
22

Mice with Pulmonary Fibrosis Driven by Telomere Dysfunction.
Juan M Povedano, Paula Martinez, Juana M Flores, Francisca Mulero, Maria A Blasco. Cell Rep 2015
130
22

Incidence and prevalence of idiopathic pulmonary fibrosis.
Ganesh Raghu, Derek Weycker, John Edelsberg, Williamson Z Bradford, Gerry Oster. Am J Respir Crit Care Med 2006
835
22

Collapse of proteostasis represents an early molecular event in Caenorhabditis elegans aging.
Anat Ben-Zvi, Elizabeth A Miller, Richard I Morimoto. Proc Natl Acad Sci U S A 2009
444
22

The integrated stress response.
Karolina Pakos-Zebrucka, Izabela Koryga, Katarzyna Mnich, Mila Ljujic, Afshin Samali, Adrienne M Gorman. EMBO Rep 2016
908
22

Multiple stromal populations contribute to pulmonary fibrosis without evidence for epithelial to mesenchymal transition.
Jason R Rock, Christina E Barkauskas, Michael J Cronce, Yan Xue, Jeffrey R Harris, Jiurong Liang, Paul W Noble, Brigid L M Hogan. Proc Natl Acad Sci U S A 2011
631
22

A chaperome subnetwork safeguards proteostasis in aging and neurodegenerative disease.
Marc Brehme, Cindy Voisine, Thomas Rolland, Shinichiro Wachi, James H Soper, Yitan Zhu, Kai Orton, Adriana Villella, Dan Garza, Marc Vidal,[...]. Cell Rep 2014
288
22

Stress responses. Mutations in a translation initiation factor identify the target of a memory-enhancing compound.
Yusuke Sekine, Alisa Zyryanova, Ana Crespillo-Casado, Peter M Fischer, Heather P Harding, David Ron. Science 2015
146
22

Monocyte-derived alveolar macrophages drive lung fibrosis and persist in the lung over the life span.
Alexander V Misharin, Luisa Morales-Nebreda, Paul A Reyfman, Carla M Cuda, James M Walter, Alexandra C McQuattie-Pimentel, Ching-I Chen, Kishore R Anekalla, Nikita Joshi, Kinola J N Williams,[...]. J Exp Med 2017
434
22

Ly6Chi monocytes direct alternatively activated profibrotic macrophage regulation of lung fibrosis.
Michael A Gibbons, Alison C MacKinnon, Prakash Ramachandran, Kevin Dhaliwal, Rodger Duffin, Alexander T Phythian-Adams, Nico van Rooijen, Christopher Haslett, Sarah E Howie, A John Simpson,[...]. Am J Respir Crit Care Med 2011
281
22

eIF2B activator prevents neurological defects caused by a chronic integrated stress response.
Yao Liang Wong, Lauren LeBon, Ana M Basso, Kathy L Kohlhaas, Arthur L Nikkel, Holly M Robb, Diana L Donnelly-Roberts, Janani Prakash, Andrew M Swensen, Nimrod D Rubinstein,[...]. Elife 2019
62
22

Inhibition of the integrated stress response reverses cognitive deficits after traumatic brain injury.
Austin Chou, Karen Krukowski, Timothy Jopson, Ping Jun Zhu, Mauro Costa-Mattioli, Peter Walter, Susanna Rosi. Proc Natl Acad Sci U S A 2017
103
22

A molecular cell atlas of the human lung from single-cell RNA sequencing.
Kyle J Travaglini, Ahmad N Nabhan, Lolita Penland, Rahul Sinha, Astrid Gillich, Rene V Sit, Stephen Chang, Stephanie D Conley, Yasuo Mori, Jun Seita,[...]. Nature 2020
303
22

Proliferating SPP1/MERTK-expressing macrophages in idiopathic pulmonary fibrosis.
Christina Morse, Tracy Tabib, John Sembrat, Kristina L Buschur, Humberto Trejo Bittar, Eleanor Valenzi, Yale Jiang, Daniel J Kass, Kevin Gibson, Wei Chen,[...]. Eur Respir J 2019
160
22

Reference-based analysis of lung single-cell sequencing reveals a transitional profibrotic macrophage.
Dvir Aran, Agnieszka P Looney, Leqian Liu, Esther Wu, Valerie Fong, Austin Hsu, Suzanna Chak, Ram P Naikawadi, Paul J Wolters, Adam R Abate,[...]. Nat Immunol 2019
712
22

Integrin α6β4 identifies an adult distal lung epithelial population with regenerative potential in mice.
Harold A Chapman, Xiaopeng Li, Jonathan P Alexander, Alexis Brumwell, Walter Lorizio, Kevin Tan, Arnoud Sonnenberg, Ying Wei, Thiennu H Vu. J Clin Invest 2011
276
22


Lineage-negative progenitors mobilize to regenerate lung epithelium after major injury.
Andrew E Vaughan, Alexis N Brumwell, Ying Xi, Jeffrey E Gotts, Doug G Brownfield, Barbara Treutlein, Kevin Tan, Victor Tan, Feng Chun Liu, Mark R Looney,[...]. Nature 2015
364
22

Polyploidy in tissue homeostasis and regeneration.
Jan Inge Øvrebø, Bruce A Edgar. Development 2018
71
22


PKR is activated by cellular dsRNAs during mitosis and acts as a mitotic regulator.
Yoosik Kim, Jung Hyun Lee, Jong-Eun Park, Jun Cho, Hyerim Yi, V Narry Kim. Genes Dev 2014
78
22


Flow Cytometry Underestimates and Planimetry Overestimates Alveolar Epithelial Type 2 Cell Expansion after Lung Injury.
Nicole L Jansing, Neesirg Patel, Jazalle McClendon, Elizabeth F Redente, Peter M Henson, Rubin M Tuder, Dallas M Hyde, Jens R Nyengaard, Rachel L Zemans. Am J Respir Crit Care Med 2018
16
22


Endoplasmic reticulum stress in pulmonary fibrosis.
Ankita Burman, Harikrishna Tanjore, Timothy S Blackwell. Matrix Biol 2018
95
11

A common MUC5B promoter polymorphism and pulmonary fibrosis.
Max A Seibold, Anastasia L Wise, Marcy C Speer, Mark P Steele, Kevin K Brown, James E Loyd, Tasha E Fingerlin, Weiming Zhang, Gunnar Gudmundsson, Steve D Groshong,[...]. N Engl J Med 2011
666
11

Activating transcription factor 4.
Kurosh Ameri, Adrian L Harris. Int J Biochem Cell Biol 2008
343
11

Recruited exudative macrophages selectively produce CXCL10 after noninfectious lung injury.
Robert M Tighe, Jiurong Liang, Ningshan Liu, Yoosun Jung, Dianhua Jiang, Michael D Gunn, Paul W Noble. Am J Respir Cell Mol Biol 2011
44
11

Exacerbation of established pulmonary fibrosis in a murine model by gammaherpesvirus.
Tracy R McMillan, Bethany B Moore, Jason B Weinberg, Kevin M Vannella, W Brad Fields, Paul J Christensen, Linda F van Dyk, Galen B Toews. Am J Respir Crit Care Med 2008
84
11

Locally renewing resident synovial macrophages provide a protective barrier for the joint.
Stephan Culemann, Anika Grüneboom, José Ángel Nicolás-Ávila, Daniela Weidner, Katrin Franziska Lämmle, Tobias Rothe, Juan A Quintana, Philipp Kirchner, Branislav Krljanac, Martin Eberhardt,[...]. Nature 2019
189
11

Idiopathic Pulmonary Fibrosis.
David J Lederer, Fernando J Martinez. N Engl J Med 2018
601
11

GRP78 and CHOP modulate macrophage apoptosis and the development of bleomycin-induced pulmonary fibrosis.
Ehab A Ayaub, Philipp S Kolb, Zahraa Mohammed-Ali, Victor Tat, James Murphy, Pierre-Simon Bellaye, Chiko Shimbori, Felix J Boivin, Rocky Lai, Edward G Lynn,[...]. J Pathol 2016
62
11


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.