A citation-based method for searching scientific literature

Xian Hao, Jyotsana J Parmar, Benoît Lelandais, Andrey Aristov, Wei Ouyang, Christian Weber, Christophe Zimmer. Genome Biol 2021
Times Cited: 2







List of co-cited articles
1 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Super-resolution chromatin tracing reveals domains and cooperative interactions in single cells.
Bogdan Bintu, Leslie J Mateo, Jun-Han Su, Nicholas A Sinnott-Armstrong, Mirae Parker, Seon Kinrot, Kei Yamaya, Alistair N Boettiger, Xiaowei Zhuang. Science 2018
374
100

Emerging strategies to target the dysfunctional cohesin complex in cancer.
Konstantinos Mintzas, Michael Heuser. Expert Opin Ther Targets 2019
9
50

Histone H3K27ac separates active from poised enhancers and predicts developmental state.
Menno P Creyghton, Albert W Cheng, G Grant Welstead, Tristan Kooistra, Bryce W Carey, Eveline J Steine, Jacob Hanna, Michael A Lodato, Garrett M Frampton, Phillip A Sharp,[...]. Proc Natl Acad Sci U S A 2010
50


Regulation of 3D chromatin organization by CTCF.
Jian-Feng Xiang, Victor G Corces. Curr Opin Genet Dev 2021
14
50

Motif-driven interactions between RNA and PRC2 are rheostats that regulate transcription elongation.
Michael Rosenberg, Roy Blum, Barry Kesner, Eric Aeby, Jean-Michel Garant, Attila Szanto, Jeannie T Lee. Nat Struct Mol Biol 2021
7
50

The polycomb-group gene Ezh2 is required for early mouse development.
D O'Carroll, S Erhardt, M Pagani, S C Barton, M A Surani, T Jenuwein. Mol Cell Biol 2001
645
50

HiC-DC+ enables systematic 3D interaction calls and differential analysis for Hi-C and HiChIP.
Merve Sahin, Wilfred Wong, Yingqian Zhan, Kinsey Van Deynze, Richard Koche, Christina S Leslie. Nat Commun 2021
4
50

HiC-Pro: an optimized and flexible pipeline for Hi-C data processing.
Nicolas Servant, Nelle Varoquaux, Bryan R Lajoie, Eric Viara, Chong-Jian Chen, Jean-Philippe Vert, Edith Heard, Job Dekker, Emmanuel Barillot. Genome Biol 2015
745
50

Single-cell Hi-C for genome-wide detection of chromatin interactions that occur simultaneously in a single cell.
Takashi Nagano, Yaniv Lubling, Eitan Yaffe, Steven W Wingett, Wendy Dean, Amos Tanay, Peter Fraser. Nat Protoc 2015
88
50

Chromatin structure dynamics during the mitosis-to-G1 phase transition.
Haoyue Zhang, Daniel J Emerson, Thomas G Gilgenast, Katelyn R Titus, Yemin Lan, Peng Huang, Di Zhang, Hongxin Wang, Cheryl A Keller, Belinda Giardine,[...]. Nature 2019
75
50

Novel insights into extrachromosomal DNA: redefining the onco-drivers of tumor progression.
Xiang Gu, Jie Yu, Peiwei Chai, Shengfang Ge, Xianqun Fan. J Exp Clin Cancer Res 2020
11
50

ChIA-PIPE: A fully automated pipeline for comprehensive ChIA-PET data analysis and visualization.
Byoungkoo Lee, Jiahui Wang, Liuyang Cai, Minji Kim, Sandeep Namburi, Harianto Tjong, Yuliang Feng, Ping Wang, Zhonghui Tang, Ahmed Abbas,[...]. Sci Adv 2020
5
50

Taking cohesin and condensin in context.
Kobe C Yuen, Jennifer L Gerton. PLoS Genet 2018
19
50

A high-resolution map of the three-dimensional chromatin interactome in human cells.
Fulai Jin, Yan Li, Jesse R Dixon, Siddarth Selvaraj, Zhen Ye, Ah Young Lee, Chia-An Yen, Anthony D Schmitt, Celso A Espinoza, Bing Ren. Nature 2013
748
50

The epigenetic factor BORIS (CTCFL) controls the androgen receptor regulatory network in ovarian cancer.
Marisol Salgado-Albarrán, Rodrigo González-Barrios, Lissania Guerra-Calderas, Nicolás Alcaraz, Thalía Estefanía Sánchez-Correa, Clementina Castro-Hernández, Yesennia Sánchez-Pérez, Elena Aréchaga-Ocampo, Alejandro García-Carrancá, David Cantú de León,[...]. Oncogenesis 2019
11
50

Polycomb group-mediated histone H2A monoubiquitination in epigenome regulation and nuclear processes.
Haithem Barbour, Salima Daou, Michael Hendzel, El Bachir Affar. Nat Commun 2020
19
50

Higher-Order Inter-chromosomal Hubs Shape 3D Genome Organization in the Nucleus.
Sofia A Quinodoz, Noah Ollikainen, Barbara Tabak, Ali Palla, Jan Marten Schmidt, Elizabeth Detmar, Mason M Lai, Alexander A Shishkin, Prashant Bhat, Yodai Takei,[...]. Cell 2018
336
50

ARID2 Chromatin Remodeler in Hepatocellular Carcinoma.
Robin Loesch, Linda Chenane, Sabine Colnot. Cells 2020
4
50

Massive reshaping of genome-nuclear lamina interactions during oncogene-induced senescence.
Christelle Lenain, Carolyn A de Graaf, Ludo Pagie, Nils L Visser, Marcel de Haas, Sandra S de Vries, Daniel Peric-Hupkes, Bas van Steensel, Daniel S Peeper. Genome Res 2017
42
50


CTCF and CTCFL in cancer.
Roxanne E Debaugny, Jane A Skok. Curr Opin Genet Dev 2020
13
50

Proteogenomics and Hi-C reveal transcriptional dysregulation in high hyperdiploid childhood acute lymphoblastic leukemia.
Minjun Yang, Mattias Vesterlund, Ioannis Siavelis, Larissa H Moura-Castro, Anders Castor, Thoas Fioretos, Rozbeh Jafari, Henrik Lilljebjörn, Duncan T Odom, Linda Olsson,[...]. Nat Commun 2019
30
50

EZH2 as a mediator of treatment resistance in melanoma.
Jessamy C Tiffen, Stuart J Gallagher, Hsin-Yi Tseng, Fabian V Filipp, Barbara Fazekas de St. Groth, Peter Hersey. Pigment Cell Melanoma Res 2016
20
50

EZH2-Targeted Therapies in Cancer: Hype or a Reality.
Marie-Lisa Eich, Mohammad Athar, James E Ferguson, Sooryanarayana Varambally. Cancer Res 2020
45
50

How chromatin-binding modules interpret histone modifications: lessons from professional pocket pickers.
Sean D Taverna, Haitao Li, Alexander J Ruthenburg, C David Allis, Dinshaw J Patel. Nat Struct Mol Biol 2007
50

3D chromatin architecture and epigenetic regulation in cancer stem cells.
Yuliang Feng, Xingguo Liu, Siim Pauklin. Protein Cell 2021
7
50

Lamina Associated Domains and Gene Regulation in Development and Cancer.
Silke J A Lochs, Samy Kefalopoulou, Jop Kind. Cells 2019
25
50

The enhancer RNA ARIEL activates the oncogenic transcriptional program in T-cell acute lymphoblastic leukemia.
Shi Hao Tan, Wei Zhong Leong, Phuong Cao Thi Ngoc, Tze King Tan, Fatima Carla Bertulfo, Mei Chee Lim, Omer An, Zhenhua Li, Allen Eng Juh Yeoh, Melissa J Fullwood,[...]. Blood 2019
28
50

Naturally occurring anti-cancer agents targeting EZH2.
Fahimeh Shahabipour, Michele Caraglia, Muhammed Majeed, Giuseppe Derosa, Pamela Maffioli, Amirhossein Sahebkar. Cancer Lett 2017
40
50



Accurate loop calling for 3D genomic data with cLoops.
Yaqiang Cao, Zhaoxiong Chen, Xingwei Chen, Daosheng Ai, Guoyu Chen, Joseph McDermott, Yi Huang, Xiaoxiao Guo, Jing-Dong J Han. Bioinformatics 2020
24
50

Phase I Study of the Novel Enhancer of Zeste Homolog 2 (EZH2) Inhibitor GSK2816126 in Patients with Advanced Hematologic and Solid Tumors.
Timothy A Yap, Jane N Winter, Lisa Giulino-Roth, Jemma Longley, Juanita Lopez, Jean-Marie Michot, John P Leonard, Vincent Ribrag, Michael T McCabe, Caretha L Creasy,[...]. Clin Cancer Res 2019
63
50

Phase separation of EML4-ALK in firing downstream signaling and promoting lung tumorigenesis.
Zhen Qin, Honghua Sun, Meiting Yue, Xinwen Pan, Liang Chen, Xinhua Feng, Xiumin Yan, Xueliang Zhu, Hongbin Ji. Cell Discov 2021
8
50

The SWI/SNF chromatin remodeling complex helps resolve R-loop-mediated transcription-replication conflicts.
Aleix Bayona-Feliu, Sonia Barroso, Sergio Muñoz, Andrés Aguilera. Nat Genet 2021
26
50

YY1 Is a Structural Regulator of Enhancer-Promoter Loops.
Abraham S Weintraub, Charles H Li, Alicia V Zamudio, Alla A Sigova, Nancy M Hannett, Daniel S Day, Brian J Abraham, Malkiel A Cohen, Behnam Nabet, Dennis L Buckley,[...]. Cell 2017
399
50

Intragenic DNA methylation and BORIS-mediated cancer-specific splicing contribute to the Warburg effect.
Smriti Singh, Sathiya Pandi Narayanan, Kajal Biswas, Amit Gupta, Neha Ahuja, Sandhya Yadav, Rajendra Kumar Panday, Atul Samaiya, Shyam K Sharan, Sanjeev Shukla. Proc Natl Acad Sci U S A 2017
36
50

Pericentromeric noncoding RNA changes DNA binding of CTCF and inflammatory gene expression in senescence and cancer.
Kenichi Miyata, Yoshinori Imai, Satoshi Hori, Mika Nishio, Tze Mun Loo, Ryo Okada, Liying Yang, Tomoyoshi Nakadai, Reo Maruyama, Risa Fujii,[...]. Proc Natl Acad Sci U S A 2021
6
50

The Polycomb complex PRC2 and its mark in life.
Raphaël Margueron, Danny Reinberg. Nature 2011
50

ncRNA- and Pc2 methylation-dependent gene relocation between nuclear structures mediates gene activation programs.
Liuqing Yang, Chunru Lin, Wen Liu, Jie Zhang, Kenneth A Ohgi, Jonathan D Grinstein, Pieter C Dorrestein, Michael G Rosenfeld. Cell 2011
458
50

Oncogenic extrachromosomal DNA functions as mobile enhancers to globally amplify chromosomal transcription.
Yanfen Zhu, Amit D Gujar, Chee-Hong Wong, Harianto Tjong, Chew Yee Ngan, Liang Gong, Yi-An Chen, Hoon Kim, Jihe Liu, Meihong Li,[...]. Cancer Cell 2021
32
50

Protein Phase Separation: A New Phase in Cell Biology.
Steven Boeynaems, Simon Alberti, Nicolas L Fawzi, Tanja Mittag, Magdalini Polymenidou, Frederic Rousseau, Joost Schymkowitz, James Shorter, Benjamin Wolozin, Ludo Van Den Bosch,[...]. Trends Cell Biol 2018
769
50

BORIS, a novel male germ-line-specific protein associated with epigenetic reprogramming events, shares the same 11-zinc-finger domain with CTCF, the insulator protein involved in reading imprinting marks in the soma.
Dmitri I Loukinov, Elena Pugacheva, Sergei Vatolin, Svetlana D Pack, Hanlim Moon, Igor Chernukhin, Poonam Mannan, Erik Larsson, Chandrasekhar Kanduri, Alexander A Vostrov,[...]. Proc Natl Acad Sci U S A 2002
262
50

Fluorescence in situ hybridization: past, present and future.
Jeffrey M Levsky, Robert H Singer. J Cell Sci 2003
293
50

Dynamic Reorganization of Extremely Long-Range Promoter-Promoter Interactions between Two States of Pluripotency.
Onkar Joshi, Shuang-Yin Wang, Tatyana Kuznetsova, Yaser Atlasi, Tianran Peng, Pierre J Fabre, Ehsan Habibi, Jani Shaik, Sadia Saeed, Lusy Handoko,[...]. Cell Stem Cell 2015
118
50

Revisiting 3D chromatin architecture in cancer development and progression.
Yuliang Feng, Siim Pauklin. Nucleic Acids Res 2020
9
50

The mutational landscape of chromatin regulatory factors across 4,623 tumor samples.
Abel Gonzalez-Perez, Alba Jene-Sanz, Nuria Lopez-Bigas. Genome Biol 2013
73
50

3D Chromosome Regulatory Landscape of Human Pluripotent Cells.
Xiong Ji, Daniel B Dadon, Benjamin E Powell, Zi Peng Fan, Diego Borges-Rivera, Sigal Shachar, Abraham S Weintraub, Denes Hnisz, Gianluca Pegoraro, Tong Ihn Lee,[...]. Cell Stem Cell 2016
237
50

Mapping the Global Chromatin Connectivity Network for Sox2 Function in Neural Stem Cell Maintenance.
Jessica A Bertolini, Rebecca Favaro, Yanfen Zhu, Miriam Pagin, Chew Yee Ngan, Chee Hong Wong, Harianto Tjong, Marit W Vermunt, Ben Martynoga, Cristiana Barone,[...]. Cell Stem Cell 2019
38
50


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.