A citation-based method for searching scientific literature

Arunabh Choudhury, Taj Mohammad, Nikhil Samarth, Afzal Hussain, Md Tabish Rehman, Asimul Islam, Mohamed F Alajmi, Shailza Singh, Md Imtaiyaz Hassan. Sci Rep 2021
Times Cited: 1







List of co-cited articles
articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Exome sequencing in amyotrophic lateral sclerosis identifies risk genes and pathways.
Elizabeth T Cirulli, Brittany N Lasseigne, Slavé Petrovski, Peter C Sapp, Patrick A Dion, Claire S Leblond, Julien Couthouis, Yi-Fan Lu, Quanli Wang, Brian J Krueger,[...]. Science 2015
556
100


Amyotrophic lateral sclerosis patient iPSC-derived astrocytes impair autophagy via non-cell autonomous mechanisms.
Martin Madill, Katya McDonagh, Jun Ma, Alice Vajda, Paul McLoughlin, Timothy O'Brien, Orla Hardiman, Sanbing Shen. Mol Brain 2017
59
100

OPLS3: A Force Field Providing Broad Coverage of Drug-like Small Molecules and Proteins.
Edward Harder, Wolfgang Damm, Jon Maple, Chuanjie Wu, Mark Reboul, Jin Yu Xiang, Lingle Wang, Dmitry Lupyan, Markus K Dahlgren, Jennifer L Knight,[...]. J Chem Theory Comput 2016
100

Investigation of deleterious effects of nsSNPs in the POT1 gene: a structural genomics-based approach to understand the mechanism of cancer development.
Mohd Amir, Vijay Kumar, Taj Mohammad, Ravins Dohare, Afzal Hussain, Md Tabish Rehman, Perwez Alam, Mohamed F Alajmi, Asimul Islam, Faizan Ahmad,[...]. J Cell Biochem 2019
18
100

Clinical features of TBK1 carriers compared with C9orf72, GRN and non-mutation carriers in a Belgian cohort.
Sara Van Mossevelde, Julie van der Zee, Ilse Gijselinck, Sebastiaan Engelborghs, Anne Sieben, Tim Van Langenhove, Jan De Bleecker, Jonathan Baets, Mathieu Vandenbulcke, Koen Van Laere,[...]. Brain 2016
58
100

NAK is an IkappaB kinase-activating kinase.
Y Tojima, A Fujimoto, M Delhase, Y Chen, S Hatakeyama, K Nakayama, Y Kaneko, Y Nimura, N Motoyama, K Ikeda,[...]. Nature 2000
286
100

FoldAmyloid: a method of prediction of amyloidogenic regions from protein sequence.
Sergiy O Garbuzynskiy, Michail Yu Lobanov, Oxana V Galzitskaya. Bioinformatics 2010
208
100

Virtual Screening Approach to Identify High-Affinity Inhibitors of Serum and Glucocorticoid-Regulated Kinase 1 among Bioactive Natural Products: Combined Molecular Docking and Simulation Studies.
Taj Mohammad, Shiza Siddiqui, Anas Shamsi, Mohamed F Alajmi, Afzal Hussain, Asimul Islam, Faizan Ahmad, Md Imtaiyaz Hassan. Molecules 2020
17
100

GPU-Accelerated Molecular Dynamics and Free Energy Methods in Amber18: Performance Enhancements and New Features.
Tai-Sung Lee, David S Cerutti, Dan Mermelstein, Charles Lin, Scott LeGrand, Timothy J Giese, Adrian Roitberg, David A Case, Ross C Walker, Darrin M York. J Chem Inf Model 2018
93
100

Identification and evaluation of bioactive natural products as potential inhibitors of human microtubule affinity-regulating kinase 4 (MARK4).
Taj Mohammad, Faez Iqbal Khan, Kevin A Lobb, Asimul Islam, Faizan Ahmad, Md Imtaiyaz Hassan. J Biomol Struct Dyn 2019
42
100

VMD: visual molecular dynamics.
W Humphrey, A Dalke, K Schulten. J Mol Graph 1996
100

Prediction of Absolute Solvation Free Energies using Molecular Dynamics Free Energy Perturbation and the OPLS Force Field.
Devleena Shivakumar, Joshua Williams, Yujie Wu, Wolfgang Damm, John Shelley, Woody Sherman. J Chem Theory Comput 2010
651
100

IKKepsilon and TBK1 are essential components of the IRF3 signaling pathway.
Katherine A Fitzgerald, Sarah M McWhirter, Kerrie L Faia, Daniel C Rowe, Eicke Latz, Douglas T Golenbock, Anthony J Coyle, Sha-Mei Liao, Tom Maniatis. Nat Immunol 2003
100

Impact of amino acid substitution in the kinase domain of Bruton tyrosine kinase and its association with X-linked agammaglobulinemia.
Taj Mohammad, Mohd Amir, Kartikay Prasad, Sagar Batra, Vijay Kumar, Afzal Hussain, Md Tabish Rehman, Mohamed F AlAjmi, Md Imtaiyaz Hassan. Int J Biol Macromol 2020
4
100



Autophagy Inhibition Dysregulates TBK1 Signaling and Promotes Pancreatic Inflammation.
Shenghong Yang, Yu Imamura, Russell W Jenkins, Israel Cañadas, Shunsuke Kitajima, Amir Aref, Arthur Brannon, Eiji Oki, Adam Castoreno, Zehua Zhu,[...]. Cancer Immunol Res 2016
46
100


TBK1 is associated with ALS and ALS-FTD in Sardinian patients.
Giuseppe Borghero, Maura Pugliatti, Francesco Marrosu, Maria Giovanna Marrosu, Maria Rita Murru, Gianluca Floris, Antonino Cannas, Patrizia Occhineri, Tea B Cau, Daniela Loi,[...]. Neurobiol Aging 2016
26
100

Exploring the sequence determinants of amyloid structure using position-specific scoring matrices.
Sebastian Maurer-Stroh, Maja Debulpaep, Nico Kuemmerer, Manuela Lopez de la Paz, Ivo Cristiano Martins, Joke Reumers, Kyle L Morris, Alastair Copland, Louise Serpell, Luis Serrano,[...]. Nat Methods 2010
390
100

Substrate recognition and transport behavior analyses of amino acid antiporter with coarse-grained models.
Shan Chang, Jian-ping Hu, Pi-yuan Lin, Xiong Jiao, Xu-hong Tian. Mol Biosyst 2010
15
100

Human TBK1: A Gatekeeper of Neuroinflammation.
Liyana Ahmad, Shen-Ying Zhang, Jean-Laurent Casanova, Vanessa Sancho-Shimizu. Trends Mol Med 2016
81
100


Automatic atom type and bond type perception in molecular mechanical calculations.
Junmei Wang, Wei Wang, Peter A Kollman, David A Case. J Mol Graph Model 2006
100


TBK1 regulates prostate cancer dormancy through mTOR inhibition.
Jin Koo Kim, Younghun Jung, Jingcheng Wang, Jeena Joseph, Anjali Mishra, Elliott E Hill, Paul H Krebsbach, Kenneth J Pienta, Yusuke Shiozawa, Russell S Taichman. Neoplasia 2013
63
100


Structural Analysis and Conformational Dynamics of STN1 Gene Mutations Involved in Coat Plus Syndrome.
Mohd Amir, Taj Mohammad, Vijay Kumar, Mohammed F Alajmi, Md Tabish Rehman, Afzal Hussain, Perwez Alam, Ravins Dohare, Asimul Islam, Faizan Ahmad,[...]. Front Mol Biosci 2019
16
100

Neuropathology and biochemistry of Aβ and its aggregates in Alzheimer's disease.
Dietmar Rudolf Thal, Jochen Walter, Takaomi C Saido, Marcus Fändrich. Acta Neuropathol 2015
103
100

IκB kinase ε (IKKε): a therapeutic target in inflammation and cancer.
Kelly Verhelst, Lynn Verstrepen, Isabelle Carpentier, Rudi Beyaert. Biochem Pharmacol 2013
68
100

Semantic and nonfluent aphasic variants, secondarily associated with amyotrophic lateral sclerosis, are predominant frontotemporal lobar degeneration phenotypes in TBK1 carriers.
Paola Caroppo, Agnès Camuzat, Anne De Septenville, Philippe Couratier, Lucette Lacomblez, Sophie Auriacombe, Olivier Flabeau, Ludmila Jornéa, Frederic Blanc, François Sellal,[...]. Alzheimers Dement (Amst) 2015
19
100

Emerging mechanisms of molecular pathology in ALS.
Owen M Peters, Mehdi Ghasemi, Robert H Brown. J Clin Invest 2015
145
100


Application of Berendsen barostat in dissipative particle dynamics for nonequilibrium dynamic simulation.
Yuqing Lin, Dingyi Pan, Jiaming Li, Lingxin Zhang, Xueming Shao. J Chem Phys 2017
17
100

Large scale analysis of the mutational landscape in β-glucuronidase: A major player of mucopolysaccharidosis type VII.
Faez Iqbal Khan, Mohd Shahbaaz, Krishna Bisetty, Abdul Waheed, William S Sly, Faizan Ahmad, Md Imtaiyaz Hassan. Gene 2016
51
100

TBK1 Provides Context-Selective Support of the Activated AKT/mTOR Pathway in Lung Cancer.
Jonathan M Cooper, Yi-Hung Ou, Elizabeth A McMillan, Rachel M Vaden, Aubhishek Zaman, Brian O Bodemann, Gurbani Makkar, Bruce A Posner, Michael A White. Cancer Res 2017
29
100

The amyloid state and its association with protein misfolding diseases.
Tuomas P J Knowles, Michele Vendruscolo, Christopher M Dobson. Nat Rev Mol Cell Biol 2014
100

Adapting proteostasis for disease intervention.
William E Balch, Richard I Morimoto, Andrew Dillin, Jeffery W Kelly. Science 2008
100

Molecular Modeling of Surfactant Micellization Using Solvent-Accessible Surface Area.
Hsieh Chen, Athanassios Z Panagiotopoulos. Langmuir 2019
10
100


Computing disease-linked SOD1 mutations: deciphering protein stability and patient-phenotype relations.
Vijay Kumar, Safikur Rahman, Hani Choudhry, Mazin A Zamzami, Mohammad Sarwar Jamal, Asimul Islam, Faizan Ahmad, Md Imtaiyaz Hassan. Sci Rep 2017
20
100

Structure prediction and functional analyses of a thermostable lipase obtained from Shewanella putrefaciens.
Faez Iqbal Khan, Bilal Nizami, Razique Anwer, Ke-Ren Gu, Krishna Bisetty, Md Imtaiyaz Hassan, Dong-Qing Wei. J Biomol Struct Dyn 2017
22
100

Structure-based identification of potential SARS-CoV-2 main protease inhibitors.
Shama Khan, Zeynab Fakhar, Afzal Hussain, Aijaz Ahmad, Deeba Shamim Jairajpuri, Mohamed F Alajmi, Md Imtaiyaz Hassan. J Biomol Struct Dyn 2020
23
100

Structural and functional impact of non-synonymous SNPs in the CST complex subunit TEN1: structural genomics approach.
Mohd Amir, Vijay Kumar, Taj Mohammad, Ravins Dohare, Md Tabish Rehman, Mohamed F Alajmi, Afzal Hussain, Faizan Ahmad, Md Imtaiyaz Hassan. Biosci Rep 2019
11
100


NEK1 variants confer susceptibility to amyotrophic lateral sclerosis.
Kevin P Kenna, Perry T C van Doormaal, Annelot M Dekker, Nicola Ticozzi, Brendan J Kenna, Frank P Diekstra, Wouter van Rheenen, Kristel R van Eijk, Ashley R Jones, Pamela Keagle,[...]. Nat Genet 2016
120
100

Molecular basis of Tank-binding kinase 1 activation by transautophosphorylation.
Xiaolei Ma, Elizabeth Helgason, Qui T Phung, Clifford L Quan, Rekha S Iyer, Michelle W Lee, Krista K Bowman, Melissa A Starovasnik, Erin C Dueber. Proc Natl Acad Sci U S A 2012
122
100

Protein stability: Determination of structure and stability of the transmembrane protein Mce4A from M. tuberculosis in membrane-like environment.
Shagufta Khan, Parvez Khan, Md Imtaiyaz Hassan, Faizan Ahmad, Asimul Islam. Int J Biol Macromol 2019
1
100



Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.