A citation-based method for searching scientific literature

Yuanyuan Li, Ping Luo, Yi Lu, Fang-Xiang Wu. BMC Bioinformatics 2021
Times Cited: 2







List of co-cited articles
articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


How does the extracellular matrix direct gene expression?
M J Bissell, H G Hall, G Parry. J Theor Biol 1982
50

Decision boundary feature extraction for neural networks.
C Lee, D A Landgrebe. IEEE Trans Neural Netw 1997
6
50

Single-cell RNA-seq highlights intratumoral heterogeneity in primary glioblastoma.
Anoop P Patel, Itay Tirosh, John J Trombetta, Alex K Shalek, Shawn M Gillespie, Hiroaki Wakimoto, Daniel P Cahill, Brian V Nahed, William T Curry, Robert L Martuza,[...]. Science 2014
50

Unbiased classification of sensory neuron types by large-scale single-cell RNA sequencing.
Dmitry Usoskin, Alessandro Furlan, Saiful Islam, Hind Abdo, Peter Lönnerberg, Daohua Lou, Jens Hjerling-Leffler, Jesper Haeggström, Olga Kharchenko, Peter V Kharchenko,[...]. Nat Neurosci 2015
909
50

Single-cell RNA-seq reveals novel regulators of human embryonic stem cell differentiation to definitive endoderm.
Li-Fang Chu, Ning Leng, Jue Zhang, Zhonggang Hou, Daniel Mamott, David T Vereide, Jeea Choi, Christina Kendziorski, Ron Stewart, James A Thomson. Genome Biol 2016
129
50



SC3: consensus clustering of single-cell RNA-seq data.
Vladimir Yu Kiselev, Kristina Kirschner, Michael T Schaub, Tallulah Andrews, Andrew Yiu, Tamir Chandra, Kedar N Natarajan, Wolf Reik, Mauricio Barahona, Anthony R Green,[...]. Nat Methods 2017
482
50


Independent component analysis based gene co-expression network inference (ICAnet) to decipher functional modules for better single-cell clustering and batch integration.
Weixu Wang, Huanhuan Tan, Mingwan Sun, Yiqing Han, Wei Chen, Shengnu Qiu, Ke Zheng, Gang Wei, Ting Ni. Nucleic Acids Res 2021
2
50

RNA Sequencing of Single Human Islet Cells Reveals Type 2 Diabetes Genes.
Yurong Xin, Jinrang Kim, Haruka Okamoto, Min Ni, Yi Wei, Christina Adler, Andrew J Murphy, George D Yancopoulos, Calvin Lin, Jesper Gromada. Cell Metab 2016
224
50

Geometry-based edge clustering for graph visualization.
Weiwei Cui, Hong Zhou, Huamin Qu, Pak Chung Wong, Xiaoming Li. IEEE Trans Vis Comput Graph 2008
30
50

DeepDTA: deep drug-target binding affinity prediction.
Hakime Öztürk, Arzucan Özgür, Elif Ozkirimli. Bioinformatics 2018
135
50

The DisGeNET knowledge platform for disease genomics: 2019 update.
Janet Piñero, Juan Manuel Ramírez-Anguita, Josep Saüch-Pitarch, Francesco Ronzano, Emilio Centeno, Ferran Sanz, Laura I Furlong. Nucleic Acids Res 2020
327
50

A SARS-CoV-2 protein interaction map reveals targets for drug repurposing.
David E Gordon, Gwendolyn M Jang, Mehdi Bouhaddou, Jiewei Xu, Kirsten Obernier, Kris M White, Matthew J O'Meara, Veronica V Rezelj, Jeffrey Z Guo, Danielle L Swaney,[...]. Nature 2020
50

DAVID-WS: a stateful web service to facilitate gene/protein list analysis.
Xiaoli Jiao, Brad T Sherman, Da Wei Huang, Robert Stephens, Michael W Baseler, H Clifford Lane, Richard A Lempicki. Bioinformatics 2012
491
50

Alternative splicing as a biomarker and potential target for drug discovery.
Kai-qin Le, Bellur S Prabhakar, Wan-jin Hong, Liang-cheng Li. Acta Pharmacol Sin 2015
44
50

Pfam: The protein families database in 2021.
Jaina Mistry, Sara Chuguransky, Lowri Williams, Matloob Qureshi, Gustavo A Salazar, Erik L L Sonnhammer, Silvio C E Tosatto, Lisanna Paladin, Shriya Raj, Lorna J Richardson,[...]. Nucleic Acids Res 2021
257
50


Improved protein structure refinement guided by deep learning based accuracy estimation.
Naozumi Hiranuma, Hahnbeom Park, Minkyung Baek, Ivan Anishchenko, Justas Dauparas, David Baker. Nat Commun 2021
27
50

Pharmacology of Modulators of Alternative Splicing.
David O Bates, Jonathan C Morris, Sebastian Oltean, Lucy F Donaldson. Pharmacol Rev 2017
48
50

Circulating Exosomes Are Strongly Involved in SARS-CoV-2 Infection.
Elettra Barberis, Virginia V Vanella, Marco Falasca, Valeria Caneapero, Giuseppe Cappellano, Davide Raineri, Marco Ghirimoldi, Veronica De Giorgis, Chiara Puricelli, Rosanna Vaschetto,[...]. Front Mol Biosci 2021
23
50

Few-shot learning creates predictive models of drug response that translate from high-throughput screens to individual patients.
Jianzhu Ma, Samson H Fong, Yunan Luo, Christopher J Bakkenist, John Paul Shen, Soufiane Mourragui, Lodewyk F A Wessels, Marc Hafner, Roded Sharan, Jian Peng,[...]. Nat Cancer 2021
12
50

Accurate prediction of protein structures and interactions using a three-track neural network.
Minkyung Baek, Frank DiMaio, Ivan Anishchenko, Justas Dauparas, Sergey Ovchinnikov, Gyu Rie Lee, Jue Wang, Qian Cong, Lisa N Kinch, R Dustin Schaeffer,[...]. Science 2021
111
50

The ChEMBL database in 2017.
Anna Gaulton, Anne Hersey, Michał Nowotka, A Patrícia Bento, Jon Chambers, David Mendez, Prudence Mutowo, Francis Atkinson, Louisa J Bellis, Elena Cibrián-Uhalte,[...]. Nucleic Acids Res 2017
781
50

Alternative Splicing in Alzheimer's Disease.
Julia E Love, Eric J Hayden, Troy T Rohn. J Parkinsons Dis Alzheimers Dis 2015
34
50


TCRD and Pharos 2021: mining the human proteome for disease biology.
Timothy K Sheils, Stephen L Mathias, Keith J Kelleher, Vishal B Siramshetty, Dac-Trung Nguyen, Cristian G Bologa, Lars Juhl Jensen, Dušica Vidović, Amar Koleti, Stephan C Schürer,[...]. Nucleic Acids Res 2021
10
50

Highly accurate protein structure prediction with AlphaFold.
John Jumper, Richard Evans, Alexander Pritzel, Tim Green, Michael Figurnov, Olaf Ronneberger, Kathryn Tunyasuvunakool, Russ Bates, Augustin Žídek, Anna Potapenko,[...]. Nature 2021
400
50



The druggable genome and support for target identification and validation in drug development.
Chris Finan, Anna Gaulton, Felix A Kruger, R Thomas Lumbers, Tina Shah, Jorgen Engmann, Luana Galver, Ryan Kelley, Anneli Karlsson, Rita Santos,[...]. Sci Transl Med 2017
147
50

Reverse Screening Methods to Search for the Protein Targets of Chemopreventive Compounds.
Hongbin Huang, Guigui Zhang, Yuquan Zhou, Chenru Lin, Suling Chen, Yutong Lin, Shangkang Mai, Zunnan Huang. Front Chem 2018
40
50

The Protein Data Bank.
H M Berman, J Westbrook, Z Feng, G Gilliland, T N Bhat, H Weissig, I N Shindyalov, P E Bourne. Nucleic Acids Res 2000
50

Performance of virtual screening against GPCR homology models: Impact of template selection and treatment of binding site plasticity.
Mariama Jaiteh, Ismael Rodríguez-Espigares, Jana Selent, Jens Carlsson. PLoS Comput Biol 2020
12
50


The Drug Repurposing Hub: a next-generation drug library and information resource.
Steven M Corsello, Joshua A Bittker, Zihan Liu, Joshua Gould, Patrick McCarren, Jodi E Hirschman, Stephen E Johnston, Anita Vrcic, Bang Wong, Mariya Khan,[...]. Nat Med 2017
280
50

1
100


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.