A citation-based method for searching scientific literature

Tetsuya Takano, Scott H Soderling. Neurosci Res 2021
Times Cited: 4







List of co-cited articles
2 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Efficient proximity labeling in living cells and organisms with TurboID.
Tess C Branon, Justin A Bosch, Ariana D Sanchez, Namrata D Udeshi, Tanya Svinkina, Steven A Carr, Jessica L Feldman, Norbert Perrimon, Alice Y Ting. Nat Biotechnol 2018
507
50

Comparative study of human and mouse postsynaptic proteomes finds high compositional conservation and abundance differences for key synaptic proteins.
Alex Bayés, Mark O Collins, Mike D R Croning, Louie N van de Lagemaat, Jyoti S Choudhary, Seth G N Grant. PLoS One 2012
129
50

Records of RNA locations in living yeast revealed through covalent marks.
Hugo C Medina-Munoz, Christopher P Lapointe, Douglas F Porter, Marvin Wickens. Proc Natl Acad Sci U S A 2020
6
25

DamID as a versatile tool for understanding gene regulation.
Gabriel N Aughey, Seth W Cheetham, Tony D Southall. Development 2019
21
25

DamID, a new tool for studying plant chromatin profiling in vivo, and its use to identify putative LHP1 target loci.
Sophie Germann, Trine Juul-Jensen, Bruno Letarnec, Valérie Gaudin. Plant J 2006
40
25

Chromophore-Assisted Proximity Labeling of DNA Reveals Chromosomal Organization in Living Cells.
Tao Ding, Liyuan Zhu, Yuxin Fang, Yangluorong Liu, Wei Tang, Peng Zou. Angew Chem Int Ed Engl 2020
5
25

Biochemical visualization of cell surface molecular clustering in living cells.
Norihiro Kotani, Jianguo Gu, Tomoya Isaji, Keiko Udaka, Naoyuki Taniguchi, Koichi Honke. Proc Natl Acad Sci U S A 2008
94
25

Directed evolution of APEX2 for electron microscopy and proximity labeling.
Stephanie S Lam, Jeffrey D Martell, Kimberli J Kamer, Thomas J Deerinck, Mark H Ellisman, Vamsi K Mootha, Alice Y Ting. Nat Methods 2015
610
25



Direct Proximity Tagging of Small Molecule Protein Targets Using an Engineered NEDD8 Ligase.
Zachary B Hill, Samuel B Pollock, Min Zhuang, James A Wells. J Am Chem Soc 2016
25
25


Proximity labeling: an emerging tool for probing in planta molecular interactions.
Xinxin Yang, Zhiyan Wen, Dingliang Zhang, Zhen Li, Dawei Li, Ugrappa Nagalakshmi, Savithramma P Dinesh-Kumar, Yongliang Zhang. Plant Commun 2020
12
25

Spatially resolved cell polarity proteomics of a human epiblast model.
Sicong Wang, Chien-Wei Lin, Amber E Carleton, Chari L Cortez, Craig Johnson, Linnea E Taniguchi, Nikola Sekulovski, Ryan F Townshend, Venkatesha Basrur, Alexey I Nesvizhskii,[...]. Sci Adv 2021
10
25

Mapping spatial transcriptome with light-activated proximity-dependent RNA labeling.
Pengchong Wang, Wei Tang, Zeyao Li, Zhongyu Zou, Ying Zhou, Ran Li, Tianyu Xiong, Jianbin Wang, Peng Zou. Nat Chem Biol 2019
35
25

Spatiotemporal profiling of cytosolic signaling complexes in living cells by selective proximity proteomics.
Mi Ke, Xiao Yuan, An He, Peiyuan Yu, Wendong Chen, Yu Shi, Tony Hunter, Peng Zou, Ruijun Tian. Nat Commun 2021
18
25

Tissue-Specific Transcription Footprinting Using RNA PoI DamID (RAPID) in Caenorhabditis elegans.
Georgina Gómez-Saldivar, Jaime Osuna-Luque, Jennifer I Semple, Dominique A Glauser, Sophie Jarriault, Peter Meister. Genetics 2020
7
25

Discovery of proteins associated with a predefined genomic locus via dCas9-APEX-mediated proximity labeling.
Samuel A Myers, Jason Wright, Ryan Peckner, Brian T Kalish, Feng Zhang, Steven A Carr. Nat Methods 2018
93
25

Proximity labeling proteomics reveals critical regulators for inner nuclear membrane protein degradation in plants.
Aobo Huang, Yu Tang, Xuetao Shi, Min Jia, Jinheng Zhu, Xiaohan Yan, Huiqin Chen, Yangnan Gu. Nat Commun 2020
25
25

Split-BioID: a proximity biotinylation assay for dimerization-dependent protein interactions.
Sofie De Munter, Janina Görnemann, Rita Derua, Bart Lesage, Junbin Qian, Ewald Heroes, Etienne Waelkens, Aleyde Van Eynde, Monique Beullens, Mathieu Bollen. FEBS Lett 2017
63
25

Monitoring T cell-dendritic cell interactions in vivo by intercellular enzymatic labelling.
Giulia Pasqual, Aleksey Chudnovskiy, Jeroen M J Tas, Marianna Agudelo, Lawrence D Schweitzer, Ang Cui, Nir Hacohen, Gabriel D Victora. Nature 2018
86
25

Cell-type and subcellular compartment-specific APEX2 proximity labeling reveals activity-dependent nuclear proteome dynamics in the striatum.
V Dumrongprechachan, R B Salisbury, G Soto, M Kumar, M L MacDonald, Y Kozorovitskiy. Nat Commun 2021
10
25

Proteomic mapping of mitochondria in living cells via spatially restricted enzymatic tagging.
Hyun-Woo Rhee, Peng Zou, Namrata D Udeshi, Jeffrey D Martell, Vamsi K Mootha, Steven A Carr, Alice Y Ting. Science 2013
700
25

Detection of in vivo protein-DNA interactions using DamID in mammalian cells.
Maartje J Vogel, Daniel Peric-Hupkes, Bas van Steensel. Nat Protoc 2007
211
25

ChromID identifies the protein interactome at chromatin marks.
Rodrigo Villaseñor, Ramon Pfaendler, Christina Ambrosi, Stefan Butz, Sara Giuliani, Elana Bryan, Thomas W Sheahan, Annika L Gable, Nina Schmolka, Massimiliano Manzo,[...]. Nat Biotechnol 2020
49
25

Identification of a Small Probe That Can Be Conjugated to Proteins by Proximity Labeling.
Weiping Sun, Yinbo Huo, Yuxuan Mei, Qingtong Zhou, Suwen Zhao, Min Zhuang. ACS Chem Biol 2020
5
25

Time-resolved proteomics profiling of the ciliary Hedgehog response.
Elena A May, Marian Kalocsay, Inès Galtier D'Auriac, Patrick S Schuster, Steven P Gygi, Maxence V Nachury, David U Mick. J Cell Biol 2021
14
25

Proximity-CLIP provides a snapshot of protein-occupied RNA elements in subcellular compartments.
Daniel Benhalevy, Dimitrios G Anastasakis, Markus Hafner. Nat Methods 2018
45
25


Mechanism of adrenergic CaV1.2 stimulation revealed by proximity proteomics.
Guoxia Liu, Arianne Papa, Alexander N Katchman, Sergey I Zakharov, Daniel Roybal, Jessica A Hennessey, Jared Kushner, Lin Yang, Bi-Xing Chen, Alexander Kushnir,[...]. Nature 2020
87
25

The evolving capabilities of enzyme-mediated proximity labeling.
Ying Zhou, Peng Zou. Curr Opin Chem Biol 2021
10
25


Cell type-selective secretome profiling in vivo.
Wei Wei, Nicholas M Riley, Andrew C Yang, Joon T Kim, Stephanie M Terrell, Veronica L Li, Marta Garcia-Contreras, Carolyn R Bertozzi, Jonathan Z Long. Nat Chem Biol 2021
34
25

Live-cell mapping of organelle-associated RNAs via proximity biotinylation combined with protein-RNA crosslinking.
Pornchai Kaewsapsak, David Michael Shechner, William Mallard, John L Rinn, Alice Y Ting. Elife 2017
94
25

Organelle proteomics experimental designs and analysis.
Laurent Gatto, Juan Antonio Vizcaíno, Henning Hermjakob, Wolfgang Huber, Kathryn S Lilley. Proteomics 2010
38
25

Dicer associates with chromatin to repress genome activity in Schizosaccharomyces pombe.
Katrina J Woolcock, Dimos Gaidatzis, Tanel Punga, Marc Bühler. Nat Struct Mol Biol 2011
67
25

Mapping the proximity interaction network of the Rho-family GTPases reveals signalling pathways and regulatory mechanisms.
Halil Bagci, Neera Sriskandarajah, Amélie Robert, Jonathan Boulais, Islam E Elkholi, Viviane Tran, Zhen-Yuan Lin, Marie-Pier Thibault, Nadia Dubé, Denis Faubert,[...]. Nat Cell Biol 2020
65
25

In vivo proximity labeling identifies cardiomyocyte protein networks during zebrafish heart regeneration.
Mira I Pronobis, Susan Zheng, Sumeet Pal Singh, Joseph A Goldman, Kenneth D Poss. Elife 2021
9
25

DamID in C. elegans reveals longevity-associated targets of DAF-16/FoxO.
Eugene Schuster, Joshua J McElwee, Jennifer M A Tullet, Ryan Doonan, Filip Matthijssens, John S Reece-Hoyes, Ian A Hope, Jacques R Vanfleteren, Janet M Thornton, David Gems. Mol Syst Biol 2010
90
25

A proteomics approach to the cell-surface interactome using the enzyme-mediated activation of radical sources reaction.
Songlin Jiang, Norihiro Kotani, Tomoko Ohnishi, Arisa Miyagawa-Yamguchi, Masayuki Tsuda, Ryusuke Yamashita, Yoshihito Ishiura, Koichi Honke. Proteomics 2012
47
25

Proximity Proteomics Has Potential for Extracellular Vesicle Identification.
Hisako Kaneda, Yui Ida, Ryusuke Kuwahara, Izumi Sato, Takanari Nakano, Haruhiko Tokuda, Tsuyoshi Sato, Takayuki Murakoshi, Koichi Honke, Norihiro Kotani. J Proteome Res 2021
2
50

Photoactivatable protein labeling by singlet oxygen mediated reactions.
Tsz-Leung To, Katalin F Medzihradszky, Alma L Burlingame, William F DeGrado, Hyunil Jo, Xiaokun Shu. Bioorg Med Chem Lett 2016
19
25

Split-TurboID enables contact-dependent proximity labeling in cells.
Kelvin F Cho, Tess C Branon, Sanjana Rajeev, Tanya Svinkina, Namrata D Udeshi, Themis Thoudam, Chulhwan Kwak, Hyun-Woo Rhee, In-Kyu Lee, Steven A Carr,[...]. Proc Natl Acad Sci U S A 2020
90
25

Improved Analysis of RNA Localization by Spatially Restricted Oxidation of RNA-Protein Complexes.
Ying Li, Mahima B Aggarwal, Ke Ke, Kim Nguyen, Robert C Spitale. Biochemistry 2018
22
25

From Affinity to Proximity Techniques to Investigate Protein Complexes in Plants.
Sandra M Kerbler, Roberto Natale, Alisdair R Fernie, Youjun Zhang. Int J Mol Sci 2021
3
33

Engineered ascorbate peroxidase as a genetically encoded reporter for electron microscopy.
Jeffrey D Martell, Thomas J Deerinck, Yasemin Sancak, Thomas L Poulos, Vamsi K Mootha, Gina E Sosinsky, Mark H Ellisman, Alice Y Ting. Nat Biotechnol 2012
408
25

Expanding APEX2 Substrates for Proximity-Dependent Labeling of Nucleic Acids and Proteins in Living Cells.
Ying Zhou, Gang Wang, Pengchong Wang, Zeyao Li, Tieqiang Yue, Jianbin Wang, Peng Zou. Angew Chem Int Ed Engl 2019
32
25

Identification of Endogenous Kinase Substrates by Proximity Labeling Combined with Kinase Perturbation and Phosphorylation Motifs.
Tomoya Niinae, Koshi Imami, Naoyuki Sugiyama, Yasushi Ishihama. Mol Cell Proteomics 2021
7
25

Proximity Dependent Biotinylation: Key Enzymes and Adaptation to Proteomics Approaches.
Payman Samavarchi-Tehrani, Reuben Samson, Anne-Claude Gingras. Mol Cell Proteomics 2020
70
25

Proteomics of protein trafficking by in vivo tissue-specific labeling.
Ilia A Droujinine, Amanda S Meyer, Dan Wang, Namrata D Udeshi, Yanhui Hu, David Rocco, Jill A McMahon, Rui Yang, JinJin Guo, Luye Mu,[...]. Nat Commun 2021
21
25


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.