A citation-based method for searching scientific literature

Jennifer A Karlow, Benpeng Miao, Xiaoyun Xing, Ting Wang, Bo Zhang. Commun Biol 2021
Times Cited: 1







List of co-cited articles
articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


edgeR: a Bioconductor package for differential expression analysis of digital gene expression data.
Mark D Robinson, Davis J McCarthy, Gordon K Smyth. Bioinformatics 2010
100

Genome-wide DNA methylation detection by MethylCap-seq and Infinium HumanMethylation450 BeadChips: an independent large-scale comparison.
Tim De Meyer, Pierre Bady, Geert Trooskens, Sebastian Kurscheid, Jocelyne Bloch, Johan M Kros, Johannes A Hainfellner, Roger Stupp, Mauro Delorenzi, Monika E Hegi,[...]. Sci Rep 2015
10
100

Genomic and epigenomic landscapes of adult de novo acute myeloid leukemia.
Timothy J Ley, Christopher Miller, Li Ding, Benjamin J Raphael, Andrew J Mungall, A Gordon Robertson, Katherine Hoadley, Timothy J Triche, Peter W Laird, Jack D Baty,[...]. N Engl J Med 2013
100

PD-L1-Mediated Immunosuppression in Glioblastoma Is Associated With the Infiltration and M2-Polarization of Tumor-Associated Macrophages.
Zhiyuan Zhu, Hongbo Zhang, Baodong Chen, Xing Liu, Shizhong Zhang, Zhitao Zong, Mengqi Gao. Front Immunol 2020
13
100

Immune Checkpoint Inhibitors for Lung Cancer Treatment: A Review.
Keisuke Onoi, Yusuke Chihara, Junji Uchino, Takayuki Shimamoto, Yoshie Morimoto, Masahiro Iwasaku, Yoshiko Kaneko, Tadaaki Yamada, Koichi Takayama. J Clin Med 2020
27
100

Guidelines for cell-type heterogeneity quantification based on a comparative analysis of reference-free DNA methylation deconvolution software.
Clémentine Decamps, Florian Privé, Raphael Bacher, Daniel Jost, Arthur Waguet, Eugene Andres Houseman, Eugene Lurie, Pavlo Lutsik, Aleksandar Milosavljevic, Michael Scherer,[...]. BMC Bioinformatics 2020
9
100


Germline-driven replication repair-deficient high-grade gliomas exhibit unique hypomethylation patterns.
Andrew J Dodgshun, Kohei Fukuoka, Melissa Edwards, Vanessa J Bianchi, Anirban Das, Alexandra Sexton-Oates, Valérie Larouche, Magimairajan I Vanan, Scott Lindhorst, Michal Yalon,[...]. Acta Neuropathol 2020
6
100

Higher cytolytic score correlates with an immunosuppressive tumor microenvironment and reduced survival in glioblastoma.
Alexander F Haddad, Jia-Shu Chen, Taemin Oh, Matheus P Pereira, Rushikesh S Joshi, Manish K Aghi. Sci Rep 2020
4
100

The 2007 WHO classification of tumours of the central nervous system.
David N Louis, Hiroko Ohgaki, Otmar D Wiestler, Webster K Cavenee, Peter C Burger, Anne Jouvet, Bernd W Scheithauer, Paul Kleihues. Acta Neuropathol 2007
100

Correlation of immune phenotype with IDH mutation in diffuse glioma.
Anna Sophie Berghoff, Barbara Kiesel, Georg Widhalm, Dorothee Wilhelm, Orsolya Rajky, Sebastian Kurscheid, Philip Kresl, Adelheid Wöhrer, Christine Marosi, Monika E Hegi,[...]. Neuro Oncol 2017
127
100

Functional and topographic effects on DNA methylation in IDH1/2 mutant cancers.
Ramona Bledea, Varshini Vasudevaraja, Seema Patel, James Stafford, Jonathan Serrano, Gianna Esposito, Lilian M Tredwin, Nina Goodman, Andreas Kloetgen, John G Golfinos,[...]. Sci Rep 2019
13
100

Differential DNA methylation in purified human blood cells: implications for cell lineage and studies on disease susceptibility.
Lovisa E Reinius, Nathalie Acevedo, Maaike Joerink, Göran Pershagen, Sven-Erik Dahlén, Dario Greco, Cilla Söderhäll, Annika Scheynius, Juha Kere. PLoS One 2012
637
100

Senescence-associated DNA methylation is stochastically acquired in subpopulations of mesenchymal stem cells.
Julia Franzen, Anne Zirkel, Jonathon Blake, Björn Rath, Vladimir Benes, Argyris Papantonis, Wolfgang Wagner. Aging Cell 2017
39
100

Chromatin landscapes reveal developmentally encoded transcriptional states that define human glioblastoma.
Stephen C Mack, Irtisha Singh, Xiuxing Wang, Rachel Hirsch, Quilian Wu, Rosie Villagomez, Jean A Bernatchez, Zhe Zhu, Ryan C Gimple, Leo J Y Kim,[...]. J Exp Med 2019
29
100

A comparison of reference-based algorithms for correcting cell-type heterogeneity in Epigenome-Wide Association Studies.
Andrew E Teschendorff, Charles E Breeze, Shijie C Zheng, Stephan Beck. BMC Bioinformatics 2017
109
100


Comprehensive genomic profiling of glioblastoma tumors, BTICs, and xenografts reveals stability and adaptation to growth environments.
Yaoqing Shen, Cameron J Grisdale, Sumaiya A Islam, Pinaki Bose, Jake Lever, Eric Y Zhao, Natalie Grinshtein, Yussanne Ma, Andrew J Mungall, Richard A Moore,[...]. Proc Natl Acad Sci U S A 2019
17
100

Radiomic subtyping improves disease stratification beyond key molecular, clinical, and standard imaging characteristics in patients with glioblastoma.
Philipp Kickingereder, Ulf Neuberger, David Bonekamp, Paula L Piechotta, Michael Götz, Antje Wick, Martin Sill, Annekathrin Kratz, Russell T Shinohara, David T W Jones,[...]. Neuro Oncol 2018
87
100

Comprehensive analysis of diverse low-grade neuroepithelial tumors with FGFR1 alterations reveals a distinct molecular signature of rosette-forming glioneuronal tumor.
Calixto-Hope G Lucas, Rohit Gupta, Pamela Doo, Julieann C Lee, Cathryn R Cadwell, Biswarathan Ramani, Jeffrey W Hofmann, Emily A Sloan, Bette K Kleinschmidt-DeMasters, Han S Lee,[...]. Acta Neuropathol Commun 2020
10
100

DNA methylation analysis on purified neurons and glia dissects age and Alzheimer's disease-specific changes in the human cortex.
Gilles Gasparoni, Sebastian Bultmann, Pavlo Lutsik, Theo F J Kraus, Sabrina Sordon, Julia Vlcek, Vanessa Dietinger, Martina Steinmaurer, Melanie Haider, Christopher B Mulholland,[...]. Epigenetics Chromatin 2018
71
100

Pediatric bithalamic gliomas have a distinct epigenetic signature and frequent EGFR exon 20 insertions resulting in potential sensitivity to targeted kinase inhibition.
Gourish Mondal, Julieann C Lee, Ajay Ravindranathan, Javier E Villanueva-Meyer, Quynh T Tran, Sariah J Allen, Jairo Barreto, Rohit Gupta, Pamela Doo, Jessica Van Ziffle,[...]. Acta Neuropathol 2020
11
100

Determining cell type abundance and expression from bulk tissues with digital cytometry.
Aaron M Newman, Chloé B Steen, Chih Long Liu, Andrew J Gentles, Aadel A Chaudhuri, Florian Scherer, Michael S Khodadoust, Mohammad S Esfahani, Bogdan A Luca, David Steiner,[...]. Nat Biotechnol 2019
492
100

Unique challenges for glioblastoma immunotherapy-discussions across neuro-oncology and non-neuro-oncology experts in cancer immunology. Meeting Report from the 2019 SNO Immuno-Oncology Think Tank.
Pavlina Chuntova, Frances Chow, Payal B Watchmaker, Mildred Galvez, Amy B Heimberger, Evan W Newell, Aaron Diaz, Ronald A DePinho, Ming O Li, E John Wherry,[...]. Neuro Oncol 2021
14
100

Differentiated glioblastoma cells accelerate tumor progression by shaping the tumor microenvironment via CCN1-mediated macrophage infiltration.
Atsuhito Uneda, Kazuhiko Kurozumi, Atsushi Fujimura, Kentaro Fujii, Joji Ishida, Yosuke Shimazu, Yoshihiro Otani, Yusuke Tomita, Yasuhiko Hattori, Yuji Matsumoto,[...]. Acta Neuropathol Commun 2021
4
100

Distribution of EGFR amplification, combined chromosome 7 gain and chromosome 10 loss, and TERT promoter mutation in brain tumors and their potential for the reclassification of IDHwt astrocytoma to glioblastoma.
Damian Stichel, Azadeh Ebrahimi, David Reuss, Daniel Schrimpf, Takahiro Ono, Mitsuaki Shirahata, Guido Reifenberger, Michael Weller, Daniel Hänggi, Wolfgang Wick,[...]. Acta Neuropathol 2018
80
100

5-Hydroxymethylcytosine localizes to enhancer elements and is associated with survival in glioblastoma patients.
Kevin C Johnson, E Andres Houseman, Jessica E King, Katharine M von Herrmann, Camilo E Fadul, Brock C Christensen. Nat Commun 2016
63
100

Rac1b and reactive oxygen species mediate MMP-3-induced EMT and genomic instability.
Derek C Radisky, Dinah D Levy, Laurie E Littlepage, Hong Liu, Celeste M Nelson, Jimmie E Fata, Devin Leake, Elizabeth L Godden, Donna G Albertson, M Angela Nieto,[...]. Nature 2005
892
100

Infant High-Grade Gliomas Comprise Multiple Subgroups Characterized by Novel Targetable Gene Fusions and Favorable Outcomes.
Matthew Clarke, Alan Mackay, Britta Ismer, Jessica C Pickles, Ruth G Tatevossian, Scott Newman, Tejus A Bale, Iris Stoler, Elisa Izquierdo, Sara Temelso,[...]. Cancer Discov 2020
48
100


Circulating monocytes and tumor-associated macrophages express recombined immunoglobulins in glioblastoma patients.
Svenja Busch, Marina Talamini, Steffen Brenner, Amr Abdulazim, Daniel Hänggi, Michael Neumaier, Marcel Seiz-Rosenhagen, Tina Fuchs. Clin Transl Med 2019
10
100

Differential gene methylation in paired glioblastomas suggests a role of immune response pathways in tumor progression.
Agustí Alentorn, Alberto Durán-Peña, Andigoni Malousi, Yannick Marie, Karima Mokhtari, Marc Sanson, Khê Hoang-Xuan, Jean-Yves Delattre, Ahmed Idbaih, Charles Vecht. J Neurooncol 2015
4
100

Isomorphic diffuse glioma is a morphologically and molecularly distinct tumour entity with recurrent gene fusions of MYBL1 or MYB and a benign disease course.
Annika K Wefers, Damian Stichel, Daniel Schrimpf, Roland Coras, Mélanie Pages, Arnault Tauziède-Espariat, Pascale Varlet, Daniel Schwarz, Figen Söylemezoglu, Ute Pohl,[...]. Acta Neuropathol 2020
28
100

Integrative genomics approach identifies molecular features associated with early-stage ovarian carcinoma histotypes.
Hanna Engqvist, Toshima Z Parris, Jana Biermann, Elisabeth Werner Rönnerman, Peter Larsson, Karin Sundfeldt, Anikó Kovács, Per Karlsson, Khalil Helou. Sci Rep 2020
5
100

The prognostic landscape of genes and infiltrating immune cells across human cancers.
Andrew J Gentles, Aaron M Newman, Chih Long Liu, Scott V Bratman, Weiguo Feng, Dongkyoon Kim, Viswam S Nair, Yue Xu, Amanda Khuong, Chuong D Hoang,[...]. Nat Med 2015
100

Cellular and Molecular Identity of Tumor-Associated Macrophages in Glioblastoma.
Zhihong Chen, Xi Feng, Cameron J Herting, Virginia Alvarez Garcia, Kai Nie, Winnie W Pong, Rikke Rasmussen, Bhakti Dwivedi, Sandra Seby, Susanne A Wolf,[...]. Cancer Res 2017
235
100

Tumor Microenvironment and Differential Responses to Therapy.
Eishu Hirata, Erik Sahai. Cold Spring Harb Perspect Med 2017
142
100

A gene expression-based study on immune cell subtypes and glioma prognosis.
Qiu-Yue Zhong, Er-Xi Fan, Guang-Yong Feng, Qi-Ying Chen, Xiao-Xia Gou, Guo-Jun Yue, Gui-Hai Zhang. BMC Cancer 2019
18
100

Alterations in ALK/ROS1/NTRK/MET drive a group of infantile hemispheric gliomas.
Ana S Guerreiro Stucklin, Scott Ryall, Kohei Fukuoka, Michal Zapotocky, Alvaro Lassaletta, Christopher Li, Taylor Bridge, Byungjin Kim, Anthony Arnoldo, Paul E Kowalski,[...]. Nat Commun 2019
70
100

Global gene expression analysis of reactive stroma in prostate cancer.
Olga Dakhova, Mustafa Ozen, Chad J Creighton, Rile Li, Gustavo Ayala, David Rowley, Michael Ittmann. Clin Cancer Res 2009
108
100

Superiority of temozolomide over radiotherapy for elderly patients with RTK II methylation class, MGMT promoter methylated malignant astrocytoma.
Antje Wick, Tobias Kessler, Michael Platten, Christoph Meisner, Michael Bamberg, Ulrich Herrlinger, Jörg Felsberg, Astrid Weyerbrock, Kirsten Papsdorf, Joachim P Steinbach,[...]. Neuro Oncol 2020
11
100

Glioblastoma heterogeneity and the tumour microenvironment: implications for preclinical research and development of new treatments.
Sally L Perrin, Michael S Samuel, Barbara Koszyca, Michael P Brown, Lisa M Ebert, Mariana Oksdath, Guillermo A Gomez. Biochem Soc Trans 2019
51
100

The DNA methylome of DDR genes and benefit from RT or TMZ in IDH mutant low-grade glioma treated in EORTC 22033.
Pierre Bady, Sebastian Kurscheid, Mauro Delorenzi, Thierry Gorlia, Martin J van den Bent, Khê Hoang-Xuan, Élodie Vauléon, Anja Gijtenbeek, Roelien Enting, Brian Thiessen,[...]. Acta Neuropathol 2018
43
100

Validation of the MethylationEPIC BeadChip for fresh-frozen and formalin-fixed paraffin-embedded tumours.
Teresia Kling, Anna Wenger, Stephan Beck, Helena Carén. Clin Epigenetics 2017
32
100

The immune suppressive microenvironment of human gliomas depends on the accumulation of bone marrow-derived macrophages in the center of the lesion.
Laura Pinton, Elena Masetto, Marina Vettore, Samantha Solito, Sara Magri, Marta D'Andolfi, Paola Del Bianco, Giovanna Lollo, Jean-Pierre Benoit, Hideho Okada,[...]. J Immunother Cancer 2019
45
100

Intratumor DNA methylation heterogeneity in glioblastoma: implications for DNA methylation-based classification.
Anna Wenger, Sandra Ferreyra Vega, Teresia Kling, Thomas Olsson Bontell, Asgeir Store Jakola, Helena Carén. Neuro Oncol 2019
38
100

Glioblastoma stem cell-derived exosomes induce M2 macrophages and PD-L1 expression on human monocytes.
Konrad Gabrusiewicz, Xu Li, Jun Wei, Yuuri Hashimoto, Anantha L Marisetty, Martina Ott, Fei Wang, David Hawke, John Yu, Luke M Healy,[...]. Oncoimmunology 2018
137
100

Tumor-infiltrating lymphocytes in glioblastoma are associated with specific genomic alterations and related to transcriptional class.
W Caleb Rutledge, Jun Kong, Jingjing Gao, David A Gutman, Lee A D Cooper, Christina Appin, Yuna Park, Lisa Scarpace, Tom Mikkelsen, Mark L Cohen,[...]. Clin Cancer Res 2013
118
100

Pan-cancer deconvolution of tumour composition using DNA methylation.
Ankur Chakravarthy, Andrew Furness, Kroopa Joshi, Ehsan Ghorani, Kirsty Ford, Matthew J Ward, Emma V King, Matt Lechner, Teresa Marafioti, Sergio A Quezada,[...]. Nat Commun 2018
73
100

The histomolecular criteria established for adult anaplastic pilocytic astrocytoma are not applicable to the pediatric population.
Albane Gareton, Arnault Tauziède-Espariat, Volodia Dangouloff-Ros, Alexandre Roux, Raphaël Saffroy, David Castel, Thomas Kergrohen, Fréderic Fina, Dominique Figarella-Branger, Mélanie Pagès,[...]. Acta Neuropathol 2020
8
100


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.