A citation-based method for searching scientific literature

Hyeon-Ah Do, Kwang-Hyun Baek. Ageing Res Rev 2021
Times Cited: 8







List of co-cited articles
9 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Breaking the chains: deubiquitylating enzyme specificity begets function.
Michael J Clague, Sylvie Urbé, David Komander. Nat Rev Mol Cell Biol 2019
309
37

The mitochondrial deubiquitinase USP30 opposes parkin-mediated mitophagy.
Baris Bingol, Joy S Tea, Lilian Phu, Mike Reichelt, Corey E Bakalarski, Qinghua Song, Oded Foreman, Donald S Kirkpatrick, Morgan Sheng. Nature 2014
503
25

Landscape of the PARKIN-dependent ubiquitylome in response to mitochondrial depolarization.
Shireen A Sarraf, Malavika Raman, Virginia Guarani-Pereira, Mathew E Sowa, Edward L Huttlin, Steven P Gygi, J Wade Harper. Nature 2013
691
25

USP8 regulates mitophagy by removing K6-linked ubiquitin conjugates from parkin.
Thomas M Durcan, Matthew Y Tang, Joëlle R Pérusse, Eman A Dashti, Miguel A Aguileta, Gian-Luca McLelland, Priti Gros, Thomas A Shaler, Denis Faubert, Benoit Coulombe,[...]. EMBO J 2014
231
25

Dynamic Regulation of Mitochondrial Import by the Ubiquitin System.
Lilian Phu, Christopher M Rose, Joy S Tea, Christopher E Wall, Erik Verschueren, Tommy K Cheung, Donald S Kirkpatrick, Baris Bingol. Mol Cell 2020
58
25

Deubiquitinating enzymes (DUBs): decipher underlying basis of neurodegenerative diseases.
Baohua Liu, Jing Ruan, Meng Chen, Zhongding Li, Gloria Manjengwa, Dirk Schlüter, Weihong Song, Xu Wang. Mol Psychiatry 2022
9
25

Global cancer statistics 2018: GLOBOCAN estimates of incidence and mortality worldwide for 36 cancers in 185 countries.
Freddie Bray, Jacques Ferlay, Isabelle Soerjomataram, Rebecca L Siegel, Lindsey A Torre, Ahmedin Jemal. CA Cancer J Clin 2018
25

Ubiquitination in the regulation of inflammatory cell death and cancer.
Peter E Cockram, Matthias Kist, Sumit Prakash, Si-Han Chen, Ingrid E Wertz, Domagoj Vucic. Cell Death Differ 2021
39
25

Beclin1 controls the levels of p53 by regulating the deubiquitination activity of USP10 and USP13.
Junli Liu, Hongguang Xia, Minsu Kim, Lihua Xu, Ying Li, Lihong Zhang, Yu Cai, Helin Vakifahmetoglu Norberg, Tao Zhang, Tsuyoshi Furuya,[...]. Cell 2011
539
25

Analysis of human acetylation stoichiometry defines mechanistic constraints on protein regulation.
Bogi Karbech Hansen, Rajat Gupta, Linda Baldus, David Lyon, Takeo Narita, Michael Lammers, Chunaram Choudhary, Brian T Weinert. Nat Commun 2019
80
12

Quantitative proteomics reveals neuronal ubiquitination of Rngo/Ddi1 and several proteasomal subunits by Ube3a, accounting for the complexity of Angelman syndrome.
Juanma Ramirez, Benoit Lectez, Nerea Osinalde, Monika Sivá, Nagore Elu, Kerman Aloria, Michaela Procházková, Coralia Perez, Jose Martínez-Hernández, Rosa Barrio,[...]. Hum Mol Genet 2018
12
12

Deubiquitylating enzymes in neuronal health and disease.
Fatima Amer-Sarsour, Alina Kordonsky, Yevgeny Berdichevsky, Gali Prag, Avraham Ashkenazi. Cell Death Dis 2021
8
12

Identification of a USP9X Substrate NFX1-123 by SILAC-Based Quantitative Proteomics.
Xiangling Chen, Dayun Lu, Jing Gao, Hongwen Zhu, Yanting Zhou, Daming Gao, Hu Zhou. J Proteome Res 2019
10
12

Global changes to the ubiquitin system in Huntington's disease.
Eric J Bennett, Thomas A Shaler, Ben Woodman, Kwon-Yul Ryu, Tatiana S Zaitseva, Christopher H Becker, Gillian P Bates, Howard Schulman, Ron R Kopito. Nature 2007
394
12

Deubiquitylases in developmental ubiquitin signaling and congenital diseases.
Mohammed A Basar, David B Beck, Achim Werner. Cell Death Differ 2021
23
12


A ubiquitin-interacting motif protects polyubiquitinated Met4 from degradation by the 26S proteasome.
Karin Flick, Shahri Raasi, Hongwei Zhang, James L Yen, Peter Kaiser. Nat Cell Biol 2006
70
12

PanelApp crowdsources expert knowledge to establish consensus diagnostic gene panels.
Antonio Rueda Martin, Eleanor Williams, Rebecca E Foulger, Sarah Leigh, Louise C Daugherty, Olivia Niblock, Ivone U S Leong, Katherine R Smith, Oleg Gerasimenko, Eik Haraldsdottir,[...]. Nat Genet 2019
139
12

Trypsin cleaves exclusively C-terminal to arginine and lysine residues.
Jesper V Olsen, Shao-En Ong, Matthias Mann. Mol Cell Proteomics 2004
734
12

The ubiquitin E1 enzyme Ube1 mediates NEDD8 activation under diverse stress conditions.
Orsolya Leidecker, Ivan Matic, Bidesh Mahata, Emmanuelle Pion, Dimitris P Xirodimas. Cell Cycle 2012
84
12

A multiubiquitin chain is confined to specific lysine in a targeted short-lived protein.
V Chau, J W Tobias, A Bachmair, D Marriott, D J Ecker, D K Gonda, A Varshavsky. Science 1989
12

Methods for quantification of in vivo changes in protein ubiquitination following proteasome and deubiquitinase inhibition.
Namrata D Udeshi, D R Mani, Thomas Eisenhaure, Philipp Mertins, Jacob D Jaffe, Karl R Clauser, Nir Hacohen, Steven A Carr. Mol Cell Proteomics 2012
122
12

Neurodevelopmental disorders: mechanisms and boundary definitions from genomes, interactomes and proteomes.
A P Mullin, A Gokhale, A Moreno-De-Luca, S Sanyal, J L Waddington, V Faundez. Transl Psychiatry 2013
63
12

Integrative analysis of the ubiquitin proteome isolated using Tandem Ubiquitin Binding Entities (TUBEs).
Fernando Lopitz-Otsoa, Eva Rodriguez-Suarez, Fabienne Aillet, Juan Casado-Vela, Valérie Lang, Rune Matthiesen, Felix Elortza, Manuel S Rodriguez. J Proteomics 2012
71
12

Detailed Dissection of UBE3A-Mediated DDI1 Ubiquitination.
Nagore Elu, Nerea Osinalde, Javier Beaskoetxea, Juanma Ramirez, Benoit Lectez, Kerman Aloria, Jose Antonio Rodriguez, Jesus M Arizmendi, Ugo Mayor. Front Physiol 2019
9
12

Deubiquitinases in cancer: new functions and therapeutic options.
J M Fraile, V Quesada, D Rodríguez, J M P Freije, C López-Otín. Oncogene 2012
315
12

ATP-dependent conjugation of reticulocyte proteins with the polypeptide required for protein degradation.
A Ciechanover, H Heller, S Elias, A L Haas, A Hershko. Proc Natl Acad Sci U S A 1980
431
12

A novel strategy to isolate ubiquitin conjugates reveals wide role for ubiquitination during neural development.
Maribel Franco, Nicholas T Seyfried, Andrea H Brand, Junmin Peng, Ugo Mayor. Mol Cell Proteomics 2011
58
12

Ubiquitin Ligases: Structure, Function, and Regulation.
Ning Zheng, Nitzan Shabek. Annu Rev Biochem 2017
590
12

Usp9X Controls Ankyrin-Repeat Domain Protein Homeostasis during Dendritic Spine Development.
Sehyoun Yoon, Euan Parnell, Maria Kasherman, Marc P Forrest, Kristoffer Myczek, Susitha Premarathne, Michelle C Sanchez Vega, Michael Piper, Thomas H J Burne, Lachlan A Jolly,[...]. Neuron 2020
23
12

The potential roles of deubiquitinating enzymes in brain diseases.
Key-Hwan Lim, Jae-Yeol Joo, Kwang-Hyun Baek. Ageing Res Rev 2020
25
12

The Ubiquitin System: a Regulatory Hub for Intellectual Disability and Autism Spectrum Disorder.
Maria A Kasherman, Susitha Premarathne, Thomas H J Burne, Stephen A Wood, Michael Piper. Mol Neurobiol 2020
15
12

Proteome Analysis of USP7 Substrates Revealed Its Role in Melanoma Through PI3K/Akt/FOXO and AMPK Pathways.
Lanyang Gao, Danli Zhu, Qin Wang, Zheng Bao, Shigang Yin, Huiyan Qiang, Heinrich Wieland, Jinyue Zhang, Alexander Teichmann, Jing Jia. Front Oncol 2021
6
16

Synaptic protein ubiquitination in rat brain revealed by antibody-based ubiquitome analysis.
Chan Hyun Na, Drew R Jones, Yanling Yang, Xusheng Wang, Yanji Xu, Junmin Peng. J Proteome Res 2012
99
12

Efficient protection and isolation of ubiquitylated proteins using tandem ubiquitin-binding entities.
Roland Hjerpe, Fabienne Aillet, Fernando Lopitz-Otsoa, Valerie Lang, Patrick England, Manuel S Rodriguez. EMBO Rep 2009
334
12

SFI1 promotes centriole duplication by recruiting USP9X to stabilize the microcephaly protein STIL.
Andrew Kodani, Tyler Moyer, Allen Chen, Andrew Holland, Christopher A Walsh, Jeremy F Reiter. J Cell Biol 2019
12
12

Internally tagged ubiquitin: a tool to identify linear polyubiquitin-modified proteins by mass spectrometry.
Katarzyna Kliza, Christoph Taumer, Irene Pinzuti, Mirita Franz-Wachtel, Simone Kunzelmann, Benjamin Stieglitz, Boris Macek, Koraljka Husnjak. Nat Methods 2017
38
12

Proteomic analyses reveal divergent ubiquitylation site patterns in murine tissues.
Sebastian A Wagner, Petra Beli, Brian T Weinert, Christian Schölz, Christian D Kelstrup, Clifford Young, Michael L Nielsen, Jesper V Olsen, Cord Brakebusch, Chunaram Choudhary. Mol Cell Proteomics 2012
217
12

USP1 (ubiquitin specific peptidase 1) targets ULK1 and regulates its cellular compartmentalization and autophagy.
Marzia Raimondi, Daniela Cesselli, Carla Di Loreto, Francesco La Marra, Claudio Schneider, Francesca Demarchi. Autophagy 2019
29
12

Gates, Channels, and Switches: Elements of the Proteasome Machine.
Daniel Finley, Xiang Chen, Kylie J Walters. Trends Biochem Sci 2016
176
12

Global analysis of lysine ubiquitination by ubiquitin remnant immunoaffinity profiling.
Guoqiang Xu, Jeremy S Paige, Samie R Jaffrey. Nat Biotechnol 2010
375
12

Neurodevelopmental Disorders between Past and Future.
Annio Posar, Paola Visconti. J Pediatr Neurosci 2017
5
20


Large-scale analysis of the human ubiquitin-related proteome.
Masaki Matsumoto, Shigetsugu Hatakeyama, Koji Oyamada, Yoshiya Oda, Toshihide Nishimura, Keiichi I Nakayama. Proteomics 2005
152
12

The recognition of ubiquitinated proteins by the proteasome.
Guinevere L Grice, James A Nathan. Cell Mol Life Sci 2016
171
12

EIF3F-related neurodevelopmental disorder: refining the phenotypic and expanding the molecular spectrum.
Ulrike Hüffmeier, Cornelia Kraus, Miriam S Reuter, Steffen Uebe, Mary-Alice Abbott, Syed A Ahmed, Kristyn L Rawson, Eileen Barr, Hong Li, Ange-Line Bruel,[...]. Orphanet J Rare Dis 2021
5
20

Quantifying ubiquitin signaling.
Alban Ordureau, Christian Münch, J Wade Harper. Mol Cell 2015
102
12


Genes that Affect Brain Structure and Function Identified by Rare Variant Analyses of Mendelian Neurologic Disease.
Ender Karaca, Tamar Harel, Davut Pehlivan, Shalini N Jhangiani, Tomasz Gambin, Zeynep Coban Akdemir, Claudia Gonzaga-Jauregui, Serkan Erdin, Yavuz Bayram, Ian M Campbell,[...]. Neuron 2015
177
12



Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.