A citation-based method for searching scientific literature

Sergey V Ulianov, Sergey V Razin. Semin Cell Dev Biol 2022
Times Cited: 4







List of co-cited articles
64 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Topological domains in mammalian genomes identified by analysis of chromatin interactions.
Jesse R Dixon, Siddarth Selvaraj, Feng Yue, Audrey Kim, Yan Li, Yin Shen, Ming Hu, Jun S Liu, Bing Ren. Nature 2012
100

A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping.
Suhas S P Rao, Miriam H Huntley, Neva C Durand, Elena K Stamenova, Ivan D Bochkov, James T Robinson, Adrian L Sanborn, Ido Machol, Arina D Omer, Eric S Lander,[...]. Cell 2014
100

Comprehensive mapping of long-range interactions reveals folding principles of the human genome.
Erez Lieberman-Aiden, Nynke L van Berkum, Louise Williams, Maxim Imakaev, Tobias Ragoczy, Agnes Telling, Ido Amit, Bryan R Lajoie, Peter J Sabo, Michael O Dorschner,[...]. Science 2009
100

Disruptions of topological chromatin domains cause pathogenic rewiring of gene-enhancer interactions.
Darío G Lupiáñez, Katerina Kraft, Verena Heinrich, Peter Krawitz, Francesco Brancati, Eva Klopocki, Denise Horn, Hülya Kayserili, John M Opitz, Renata Laxova,[...]. Cell 2015
75

Active chromatin and transcription play a key role in chromosome partitioning into topologically associating domains.
Sergey V Ulianov, Ekaterina E Khrameeva, Alexey A Gavrilov, Ilya M Flyamer, Pavel Kos, Elena A Mikhaleva, Aleksey A Penin, Maria D Logacheva, Maxim V Imakaev, Alexander Chertovich,[...]. Genome Res 2016
191
75

Visualizing DNA folding and RNA in embryos at single-cell resolution.
Leslie J Mateo, Sedona E Murphy, Antonina Hafner, Isaac S Cinquini, Carly A Walker, Alistair N Boettiger. Nature 2019
160
75

Spatial partitioning of the regulatory landscape of the X-inactivation centre.
Elphège P Nora, Bryan R Lajoie, Edda G Schulz, Luca Giorgetti, Ikuhiro Okamoto, Nicolas Servant, Tristan Piolot, Nynke L van Berkum, Johannes Meisig, John Sedat,[...]. Nature 2012
75

Three-dimensional folding and functional organization principles of the Drosophila genome.
Tom Sexton, Eitan Yaffe, Ephraim Kenigsberg, Frédéric Bantignies, Benjamin Leblanc, Michael Hoichman, Hugues Parrinello, Amos Tanay, Giacomo Cavalli. Cell 2012
75

Understanding 3D genome organization by multidisciplinary methods.
Ivana Jerkovic, Giacomo Cavalli. Nat Rev Mol Cell Biol 2021
35
75

3D mapping and accelerated super-resolution imaging of the human genome using in situ sequencing.
Huy Q Nguyen, Shyamtanu Chattoraj, David Castillo, Son C Nguyen, Guy Nir, Antonios Lioutas, Elliot A Hershberg, Nuno M C Martins, Paul L Reginato, Mohammed Hannan,[...]. Nat Methods 2020
36
75

Microscopy-Based Chromosome Conformation Capture Enables Simultaneous Visualization of Genome Organization and Transcription in Intact Organisms.
Andrés M Cardozo Gizzi, Diego I Cattoni, Jean-Bernard Fiche, Sergio M Espinola, Julian Gurgo, Olivier Messina, Christophe Houbron, Yuki Ogiyama, Giorgio L Papadopoulos, Giacomo Cavalli,[...]. Mol Cell 2019
95
75

Higher-Order Inter-chromosomal Hubs Shape 3D Genome Organization in the Nucleus.
Sofia A Quinodoz, Noah Ollikainen, Barbara Tabak, Ali Palla, Jan Marten Schmidt, Elizabeth Detmar, Mason M Lai, Alexander A Shishkin, Prashant Bhat, Yodai Takei,[...]. Cell 2018
336
75

Super-resolution chromatin tracing reveals domains and cooperative interactions in single cells.
Bogdan Bintu, Leslie J Mateo, Jun-Han Su, Nicholas A Sinnott-Armstrong, Mirae Parker, Seon Kinrot, Kei Yamaya, Alistair N Boettiger, Xiaowei Zhuang. Science 2018
374
75


To loop or not to loop: what is the role of TADs in enhancer function and gene regulation?
Gabriel R Cavalheiro, Tim Pollex, Eileen Em Furlong. Curr Opin Genet Dev 2021
10
50

Super-resolution imaging reveals distinct chromatin folding for different epigenetic states.
Alistair N Boettiger, Bogdan Bintu, Jeffrey R Moffitt, Siyuan Wang, Brian J Beliveau, Geoffrey Fudenberg, Maxim Imakaev, Leonid A Mirny, Chao-ting Wu, Xiaowei Zhuang. Nature 2016
436
50

Liquid droplet formation by HP1α suggests a role for phase separation in heterochromatin.
Adam G Larson, Daniel Elnatan, Madeline M Keenen, Michael J Trnka, Jonathan B Johnston, Alma L Burlingame, David A Agard, Sy Redding, Geeta J Narlikar. Nature 2017
779
50

Evolutionarily Conserved Principles Predict 3D Chromatin Organization.
M Jordan Rowley, Michael H Nichols, Xiaowen Lyu, Masami Ando-Kuri, I Sarahi M Rivera, Karen Hermetz, Ping Wang, Yijun Ruan, Victor G Corces. Mol Cell 2017
251
50

Methods for mapping 3D chromosome architecture.
Rieke Kempfer, Ana Pombo. Nat Rev Genet 2020
159
50

Phase separation drives heterochromatin domain formation.
Amy R Strom, Alexander V Emelyanov, Mustafa Mir, Dmitry V Fyodorov, Xavier Darzacq, Gary H Karpen. Nature 2017
827
50

Organization and function of the 3D genome.
Boyan Bonev, Giacomo Cavalli. Nat Rev Genet 2016
426
50

TADs are 3D structural units of higher-order chromosome organization in Drosophila.
Quentin Szabo, Daniel Jost, Jia-Ming Chang, Diego I Cattoni, Giorgio L Papadopoulos, Boyan Bonev, Tom Sexton, Julian Gurgo, Caroline Jacquier, Marcelo Nollmann,[...]. Sci Adv 2018
135
50

Cis-regulatory chromatin loops arise before TADs and gene activation, and are independent of cell fate during early Drosophila development.
Sergio Martin Espinola, Markus Götz, Maelle Bellec, Olivier Messina, Jean-Bernard Fiche, Christophe Houbron, Matthieu Dejean, Ingolf Reim, Andrés M Cardozo Gizzi, Mounia Lagha,[...]. Nat Genet 2021
33
50


Single-cell absolute contact probability detection reveals chromosomes are organized by multiple low-frequency yet specific interactions.
Diego I Cattoni, Andrés M Cardozo Gizzi, Mariya Georgieva, Marco Di Stefano, Alessandro Valeri, Delphine Chamousset, Christophe Houbron, Stephanie Déjardin, Jean-Bernard Fiche, Inma González,[...]. Nat Commun 2017
80
50

Formation of Chromosomal Domains by Loop Extrusion.
Geoffrey Fudenberg, Maxim Imakaev, Carolyn Lu, Anton Goloborodko, Nezar Abdennur, Leonid A Mirny. Cell Rep 2016
816
50


Genome-wide maps of nuclear lamina interactions in single human cells.
Jop Kind, Ludo Pagie, Sandra S de Vries, Leila Nahidiazar, Siddharth S Dey, Magda Bienko, Ye Zhan, Bryan Lajoie, Carolyn A de Graaf, Mario Amendola,[...]. Cell 2015
249
50

Regulation of single-cell genome organization into TADs and chromatin nanodomains.
Quentin Szabo, Axelle Donjon, Ivana Jerković, Giorgio L Papadopoulos, Thierry Cheutin, Boyan Bonev, Elphège P Nora, Benoit G Bruneau, Frédéric Bantignies, Giacomo Cavalli. Nat Genet 2020
48
50

Single-nucleus Hi-C reveals unique chromatin reorganization at oocyte-to-zygote transition.
Ilya M Flyamer, Johanna Gassler, Maxim Imakaev, Hugo B Brandão, Sergey V Ulianov, Nezar Abdennur, Sergey V Razin, Leonid A Mirny, Kikuë Tachibana-Konwalski. Nature 2017
380
50

Heterochromatin drives compartmentalization of inverted and conventional nuclei.
Martin Falk, Yana Feodorova, Natalia Naumova, Maxim Imakaev, Bryan R Lajoie, Heinrich Leonhardt, Boris Joffe, Job Dekker, Geoffrey Fudenberg, Irina Solovei,[...]. Nature 2019
217
50

Walking along chromosomes with super-resolution imaging, contact maps, and integrative modeling.
Guy Nir, Irene Farabella, Cynthia Pérez Estrada, Carl G Ebeling, Brian J Beliveau, Hiroshi M Sasaki, S Dean Lee, Son C Nguyen, Ruth B McCole, Shyamtanu Chattoraj,[...]. PLoS Genet 2018
123
50

RNA imaging. Spatially resolved, highly multiplexed RNA profiling in single cells.
Kok Hao Chen, Alistair N Boettiger, Jeffrey R Moffitt, Siyuan Wang, Xiaowei Zhuang. Science 2015
821
50

Chromosome territories--a functional nuclear landscape.
Thomas Cremer, Marion Cremer, Steffen Dietzel, Stefan Müller, Irina Solovei, Stanislav Fakan. Curr Opin Cell Biol 2006
423
50

Multiplexed imaging of nucleome architectures in single cells of mammalian tissue.
Miao Liu, Yanfang Lu, Bing Yang, Yanbo Chen, Jonathan S D Radda, Mengwei Hu, Samuel G Katz, Siyuan Wang. Nat Commun 2020
25
50

Mechanisms and Functions of Chromosome Compartmentalization.
Erica M Hildebrand, Job Dekker. Trends Biochem Sci 2020
60
50

In situ genome sequencing resolves DNA sequence and structure in intact biological samples.
Andrew C Payne, Zachary D Chiang, Paul L Reginato, Sarah M Mangiameli, Evan M Murray, Chun-Chen Yao, Styliani Markoulaki, Andrew S Earl, Ajay S Labade, Rudolf Jaenisch,[...]. Science 2021
50
50

Single-cell nuclear architecture across cell types in the mouse brain.
Yodai Takei, Shiwei Zheng, Jina Yun, Sheel Shah, Nico Pierson, Jonathan White, Simone Schindler, Carsten H Tischbirek, Guo-Cheng Yuan, Long Cai. Science 2021
11
50

Single-cell in situ RNA profiling by sequential hybridization.
Eric Lubeck, Ahmet F Coskun, Timur Zhiyentayev, Mubhij Ahmad, Long Cai. Nat Methods 2014
387
50

Multiplex chromatin interactions with single-molecule precision.
Meizhen Zheng, Simon Zhongyuan Tian, Daniel Capurso, Minji Kim, Rahul Maurya, Byoungkoo Lee, Emaly Piecuch, Liang Gong, Jacqueline Jufen Zhu, Zhihui Li,[...]. Nature 2019
91
50

Advances in Chromatin Imaging at Kilobase-Scale Resolution.
Alistair Boettiger, Sedona Murphy. Trends Genet 2020
49
50

Extensive Heterogeneity and Intrinsic Variation in Spatial Genome Organization.
Elizabeth H Finn, Gianluca Pegoraro, Hugo B Brandão, Anne-Laure Valton, Marlies E Oomen, Job Dekker, Leonid Mirny, Tom Misteli. Cell 2019
194
50

Single-cell imaging of genome organization and dynamics.
Liangqi Xie, Zhe Liu. Mol Syst Biol 2021
10
50

Order and stochasticity in the folding of individual Drosophila genomes.
Sergey V Ulianov, Vlada V Zakharova, Aleksandra A Galitsyna, Pavel I Kos, Kirill E Polovnikov, Ilya M Flyamer, Elena A Mikhaleva, Ekaterina E Khrameeva, Diego Germini, Mariya D Logacheva,[...]. Nat Commun 2021
14
50

Organizational principles of 3D genome architecture.
M Jordan Rowley, Victor G Corces. Nat Rev Genet 2018
405
50

OligoMiner provides a rapid, flexible environment for the design of genome-scale oligonucleotide in situ hybridization probes.
Brian J Beliveau, Jocelyn Y Kishi, Guy Nir, Hiroshi M Sasaki, Sinem K Saka, Son C Nguyen, Chao-Ting Wu, Peng Yin. Proc Natl Acad Sci U S A 2018
84
50

Chromatin extrusion explains key features of loop and domain formation in wild-type and engineered genomes.
Adrian L Sanborn, Suhas S P Rao, Su-Chen Huang, Neva C Durand, Miriam H Huntley, Andrew I Jewett, Ivan D Bochkov, Dharmaraj Chinnappan, Ashok Cutkosky, Jian Li,[...]. Proc Natl Acad Sci U S A 2015
837
50

Spatial organization of chromatin domains and compartments in single chromosomes.
Siyuan Wang, Jun-Han Su, Brian J Beliveau, Bogdan Bintu, Jeffrey R Moffitt, Chao-ting Wu, Xiaowei Zhuang. Science 2016
296
50

Three-dimensional genome structures of single diploid human cells.
Longzhi Tan, Dong Xing, Chi-Han Chang, Heng Li, X Sunney Xie. Science 2018
177
50

3D structures of individual mammalian genomes studied by single-cell Hi-C.
Tim J Stevens, David Lando, Srinjan Basu, Liam P Atkinson, Yang Cao, Steven F Lee, Martin Leeb, Kai J Wohlfahrt, Wayne Boucher, Aoife O'Shaughnessy-Kirwan,[...]. Nature 2017
413
50


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.