A citation-based method for searching scientific literature

Tianyi Sun, Dongyuan Song, Wei Vivian Li, Jingyi Jessica Li. Genome Biol 2021
Times Cited: 2







List of co-cited articles
articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Efficacy of continuous EGFR-inhibition and role of Hedgehog in EGFR acquired resistance in human lung cancer cells with activating mutation of EGFR.
Carminia Maria Della Corte, Umberto Malapelle, Elena Vigliar, Francesco Pepe, Giancarlo Troncone, Vincenza Ciaramella, Teresa Troiani, Erika Martinelli, Valentina Belli, Fortunato Ciardiello,[...]. Oncotarget 2017
17
50

Comprehensive Integration of Single-Cell Data.
Tim Stuart, Andrew Butler, Paul Hoffman, Christoph Hafemeister, Efthymia Papalexi, William M Mauck, Yuhan Hao, Marlon Stoeckius, Peter Smibert, Rahul Satija. Cell 2019
50

Treating cancer with selective CDK4/6 inhibitors.
Ben O'Leary, Richard S Finn, Nicholas C Turner. Nat Rev Clin Oncol 2016
447
50

GiniClust: detecting rare cell types from single-cell gene expression data with Gini index.
Lan Jiang, Huidong Chen, Luca Pinello, Guo-Cheng Yuan. Genome Biol 2016
95
50


Integrative analysis of single-cell genomics data by coupled nonnegative matrix factorizations.
Zhana Duren, Xi Chen, Mahdi Zamanighomi, Wanwen Zeng, Ansuman T Satpathy, Howard Y Chang, Yong Wang, Wing Hung Wong. Proc Natl Acad Sci U S A 2018
47
50


Selection of housekeeping genes for gene expression studies in human reticulocytes using real-time PCR.
Nicholas Silver, Steve Best, Jie Jiang, Swee Lay Thein. BMC Mol Biol 2006
744
50

Single-Cell Multi-omic Integration Compares and Contrasts Features of Brain Cell Identity.
Joshua D Welch, Velina Kozareva, Ashley Ferreira, Charles Vanderburg, Carly Martin, Evan Z Macosko. Cell 2019
187
50

Comparison of clustering tools in R for medium-sized 10x Genomics single-cell RNA-sequencing data.
Saskia Freytag, Luyi Tian, Ingrid Lönnstedt, Milica Ng, Melanie Bahlo. F1000Res 2018
58
50

Housekeeping genes as internal standards: use and limits.
O Thellin, W Zorzi, B Lakaye, B De Borman, B Coumans, G Hennen, T Grisar, A Igout, E Heinen. J Biotechnol 1999
50

Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets.
Evan Z Macosko, Anindita Basu, Rahul Satija, James Nemesh, Karthik Shekhar, Melissa Goldman, Itay Tirosh, Allison R Bialas, Nolan Kamitaki, Emily M Martersteck,[...]. Cell 2015
50

Human housekeeping genes, revisited.
Eli Eisenberg, Erez Y Levanon. Trends Genet 2013
570
50

Fast, sensitive and accurate integration of single-cell data with Harmony.
Ilya Korsunsky, Nghia Millard, Jean Fan, Kamil Slowikowski, Fan Zhang, Kevin Wei, Yuriy Baglaenko, Michael Brenner, Po-Ru Loh, Soumya Raychaudhuri. Nat Methods 2019
339
50

High-throughput single-cell gene-expression profiling with multiplexed error-robust fluorescence in situ hybridization.
Jeffrey R Moffitt, Junjie Hao, Guiping Wang, Kok Hao Chen, Hazen P Babcock, Xiaowei Zhuang. Proc Natl Acad Sci U S A 2016
153
50

Metagenes and molecular pattern discovery using matrix factorization.
Jean-Philippe Brunet, Pablo Tamayo, Todd R Golub, Jill P Mesirov. Proc Natl Acad Sci U S A 2004
664
50

Evolution and clinical impact of co-occurring genetic alterations in advanced-stage EGFR-mutant lung cancers.
Collin M Blakely, Thomas B K Watkins, Wei Wu, Beatrice Gini, Jacob J Chabon, Caroline E McCoach, Nicholas McGranahan, Gareth A Wilson, Nicolai J Birkbak, Victor R Olivas,[...]. Nat Genet 2017
225
50

Detecting heterogeneity in single-cell RNA-Seq data by non-negative matrix factorization.
Xun Zhu, Travers Ching, Xinghua Pan, Sherman M Weissman, Lana Garmire. PeerJ 2017
29
50

A Next Generation Connectivity Map: L1000 Platform and the First 1,000,000 Profiles.
Aravind Subramanian, Rajiv Narayan, Steven M Corsello, David D Peck, Ted E Natoli, Xiaodong Lu, Joshua Gould, John F Davis, Andrew A Tubelli, Jacob K Asiedu,[...]. Cell 2017
720
50

Dimensionality reduction for single cell RNA sequencing data using constrained robust non-negative matrix factorization.
Shuqin Zhang, Liu Yang, Jinwen Yang, Zhixiang Lin, Michael K Ng. NAR Genom Bioinform 2020
1
100

Pooling across cells to normalize single-cell RNA sequencing data with many zero counts.
Aaron T L Lun, Karsten Bach, John C Marioni. Genome Biol 2016
359
50



Linear and nonlinear projective nonnegative matrix factorization.
Zhirong Yang, Erkki Oja. IEEE Trans Neural Netw 2010
40
50

Imaging individual mRNA molecules using multiple singly labeled probes.
Arjun Raj, Patrick van den Bogaard, Scott A Rifkin, Alexander van Oudenaarden, Sanjay Tyagi. Nat Methods 2008
50

Probabilistic count matrix factorization for single cell expression data analysis.
Ghislain Durif, Laurent Modolo, Jeff E Mold, Sophie Lambert-Lacroix, Franck Picard. Bioinformatics 2019
11
50

Single-cell multimodal omics: the power of many.
Chenxu Zhu, Sebastian Preissl, Bing Ren. Nat Methods 2020
60
50

GAPDH as a housekeeping gene: analysis of GAPDH mRNA expression in a panel of 72 human tissues.
Robert D Barber, Dan W Harmer, Robert A Coleman, Brian J Clark. Physiol Genomics 2005
426
50

A Single-Cell Transcriptomic Map of the Human and Mouse Pancreas Reveals Inter- and Intra-cell Population Structure.
Maayan Baron, Adrian Veres, Samuel L Wolock, Aubrey L Faust, Renaud Gaujoux, Amedeo Vetere, Jennifer Hyoje Ryu, Bridget K Wagner, Shai S Shen-Orr, Allon M Klein,[...]. Cell Syst 2016
367
50


HyPR-seq: Single-cell quantification of chosen RNAs via hybridization and sequencing of DNA probes.
Jamie L Marshall, Benjamin R Doughty, Vidya Subramanian, Philine Guckelberger, Qingbo Wang, Linlin M Chen, Samuel G Rodriques, Kaite Zhang, Charles P Fulco, Joseph Nasser,[...]. Proc Natl Acad Sci U S A 2020
4
50

Single-cell ATAC-seq: strength in numbers.
Sebastian Pott, Jason D Lieb. Genome Biol 2015
27
50

Exploring high-dimensional biological data with sparse contrastive principal component analysis.
Philippe Boileau, Nima S Hejazi, Sandrine Dudoit. Bioinformatics 2020
1
100


f-scLVM: scalable and versatile factor analysis for single-cell RNA-seq.
Florian Buettner, Naruemon Pratanwanich, Davis J McCarthy, John C Marioni, Oliver Stegle. Genome Biol 2017
44
50

BART-Seq: cost-effective massively parallelized targeted sequencing for genomics, transcriptomics, and single-cell analysis.
Fatma Uzbas, Florian Opperer, Can Sönmezer, Dmitry Shaposhnikov, Steffen Sass, Christian Krendl, Philipp Angerer, Fabian J Theis, Nikola S Mueller, Micha Drukker. Genome Biol 2019
9
50

SCMarker: Ab initio marker selection for single cell transcriptome profiling.
Fang Wang, Shaoheng Liang, Tapsi Kumar, Nicholas Navin, Ken Chen. PLoS Comput Biol 2019
3
50

M3Drop: dropout-based feature selection for scRNASeq.
Tallulah S Andrews, Martin Hemberg. Bioinformatics 2019
66
50


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.