A citation-based method for searching scientific literature

Kevin W Currin, Michael R Erdos, Narisu Narisu, Vivek Rai, Swarooparani Vadlamudi, Hannah J Perrin, Jacqueline R Idol, Tingfen Yan, Ricardo D'Oliveira Albanus, K Alaine Broadaway, Amy S Etheridge, Lori L Bonnycastle, Peter Orchard, John P Didion, Amarjit S Chaudhry, Federico Innocenti, Erin G Schuetz, Laura J Scott, Stephen C J Parker, Francis S Collins, Karen L Mohlke. Am J Hum Genet 2021
Times Cited: 1







List of co-cited articles
articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


iPSCORE: A Resource of 222 iPSC Lines Enabling Functional Characterization of Genetic Variation across a Variety of Cell Types.
Athanasia D Panopoulos, Matteo D'Antonio, Paola Benaglio, Roy Williams, Sherin I Hashem, Bernhard M Schuldt, Christopher DeBoever, Angelo D Arias, Melvin Garcia, Bradley C Nelson,[...]. Stem Cell Reports 2017
65
100

HMMRATAC: a Hidden Markov ModeleR for ATAC-seq.
Evan D Tarbell, Tao Liu. Nucleic Acids Res 2019
27
100

Snakemake-a scalable bioinformatics workflow engine.
Johannes Köster, Sven Rahmann. Bioinformatics 2018
85
100

Cell-type-specific effects of genetic variation on chromatin accessibility during human neuronal differentiation.
Dan Liang, Angela L Elwell, Nil Aygün, Oleh Krupa, Justin M Wolter, Felix A Kyere, Michael J Lafferty, Kerry E Cheek, Kenan P Courtney, Marianna Yusupova,[...]. Nat Neurosci 2021
3
100

ATAC-seq: A Method for Assaying Chromatin Accessibility Genome-Wide.
Jason D Buenrostro, Beijing Wu, Howard Y Chang, William J Greenleaf. Curr Protoc Mol Biol 2015
100

Model-based analysis of ChIP-Seq (MACS).
Yong Zhang, Tao Liu, Clifford A Meyer, Jérôme Eeckhoute, David S Johnson, Bradley E Bernstein, Chad Nusbaum, Richard M Myers, Myles Brown, Wei Li,[...]. Genome Biol 2008
100

A multi-omic atlas of the human frontal cortex for aging and Alzheimer's disease research.
Philip L De Jager, Yiyi Ma, Cristin McCabe, Jishu Xu, Badri N Vardarajan, Daniel Felsky, Hans-Ulrich Klein, Charles C White, Mette A Peters, Ben Lodgson,[...]. Sci Data 2018
116
100

Cistrome Data Browser: expanded datasets and new tools for gene regulatory analysis.
Rongbin Zheng, Changxin Wan, Shenglin Mei, Qian Qin, Qiu Wu, Hanfei Sun, Chen-Hao Chen, Myles Brown, Xiaoyan Zhang, Clifford A Meyer,[...]. Nucleic Acids Res 2019
161
100

From reads to insight: a hitchhiker's guide to ATAC-seq data analysis.
Feng Yan, David R Powell, David J Curtis, Nicholas C Wong. Genome Biol 2020
41
100

Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position.
Jason D Buenrostro, Paul G Giresi, Lisa C Zaba, Howard Y Chang, William J Greenleaf. Nat Methods 2013
100

Shared genetic effects on chromatin and gene expression indicate a role for enhancer priming in immune response.
Kaur Alasoo, Julia Rodrigues, Subhankar Mukhopadhyay, Andrew J Knights, Alice L Mann, Kousik Kundu, Christine Hale, Gordon Dougan, Daniel J Gaffney. Nat Genet 2018
92
100

Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles.
Aravind Subramanian, Pablo Tamayo, Vamsi K Mootha, Sayan Mukherjee, Benjamin L Ebert, Michael A Gillette, Amanda Paulovich, Scott L Pomeroy, Todd R Golub, Eric S Lander,[...]. Proc Natl Acad Sci U S A 2005
100

AIAP: A Quality Control and Integrative Analysis Package to Improve ATAC-seq Data Analysis.
Shaopeng Liu, Daofeng Li, Cheng Lyu, Paul M Gontarz, Benpeng Miao, Pamela A F Madden, Ting Wang, Bo Zhang. Genomics Proteomics Bioinformatics 2021
4
100

Dynamic regulation of nucleosome positioning in the human genome.
Dustin E Schones, Kairong Cui, Suresh Cuddapah, Tae-Young Roh, Artem Barski, Zhibin Wang, Gang Wei, Keji Zhao. Cell 2008
912
100

The chromatin accessibility landscape of primary human cancers.
M Ryan Corces, Jeffrey M Granja, Shadi Shams, Bryan H Louie, Jose A Seoane, Wanding Zhou, Tiago C Silva, Clarice Groeneveld, Christopher K Wong, Seung Woo Cho,[...]. Science 2018
284
100

Evaluation of chromatin accessibility in prefrontal cortex of individuals with schizophrenia.
Julien Bryois, Melanie E Garrett, Lingyun Song, Alexias Safi, Paola Giusti-Rodriguez, Graham D Johnson, Annie W Shieh, Alfonso Buil, John F Fullard, Panos Roussos,[...]. Nat Commun 2018
55
100

FAIRE (Formaldehyde-Assisted Isolation of Regulatory Elements) isolates active regulatory elements from human chromatin.
Paul G Giresi, Jonghwan Kim, Ryan M McDaniell, Vishwanath R Iyer, Jason D Lieb. Genome Res 2007
594
100

High-resolution mapping and characterization of open chromatin across the genome.
Alan P Boyle, Sean Davis, Hennady P Shulha, Paul Meltzer, Elliott H Margulies, Zhiping Weng, Terrence S Furey, Gregory E Crawford. Cell 2008
837
100

Fine-mapping cellular QTLs with RASQUAL and ATAC-seq.
Natsuhiko Kumasaka, Andrew J Knights, Daniel J Gaffney. Nat Genet 2016
82
100

Computational Methods for Assessing Chromatin Hierarchy.
Pearl Chang, Moloya Gohain, Ming-Ren Yen, Pao-Yang Chen. Comput Struct Biotechnol J 2018
12
100


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.