A citation-based method for searching scientific literature

Kevin W Currin, Michael R Erdos, Narisu Narisu, Vivek Rai, Swarooparani Vadlamudi, Hannah J Perrin, Jacqueline R Idol, Tingfen Yan, Ricardo D'Oliveira Albanus, K Alaine Broadaway, Amy S Etheridge, Lori L Bonnycastle, Peter Orchard, John P Didion, Amarjit S Chaudhry, Federico Innocenti, Erin G Schuetz, Laura J Scott, Stephen C J Parker, Francis S Collins, Karen L Mohlke. Am J Hum Genet 2021
Times Cited: 1

List of co-cited articles
articles co-cited >1

Times Cited
  Times     Co-cited

iPSCORE: A Resource of 222 iPSC Lines Enabling Functional Characterization of Genetic Variation across a Variety of Cell Types.
Athanasia D Panopoulos, Matteo D'Antonio, Paola Benaglio, Roy Williams, Sherin I Hashem, Bernhard M Schuldt, Christopher DeBoever, Angelo D Arias, Melvin Garcia, Bradley C Nelson,[...]. Stem Cell Reports 2017

HMMRATAC: a Hidden Markov ModeleR for ATAC-seq.
Evan D Tarbell, Tao Liu. Nucleic Acids Res 2019

Snakemake-a scalable bioinformatics workflow engine.
Johannes Köster, Sven Rahmann. Bioinformatics 2018

Cell-type-specific effects of genetic variation on chromatin accessibility during human neuronal differentiation.
Dan Liang, Angela L Elwell, Nil Aygün, Oleh Krupa, Justin M Wolter, Felix A Kyere, Michael J Lafferty, Kerry E Cheek, Kenan P Courtney, Marianna Yusupova,[...]. Nat Neurosci 2021

ATAC-seq: A Method for Assaying Chromatin Accessibility Genome-Wide.
Jason D Buenrostro, Beijing Wu, Howard Y Chang, William J Greenleaf. Curr Protoc Mol Biol 2015

Model-based analysis of ChIP-Seq (MACS).
Yong Zhang, Tao Liu, Clifford A Meyer, Jérôme Eeckhoute, David S Johnson, Bradley E Bernstein, Chad Nusbaum, Richard M Myers, Myles Brown, Wei Li,[...]. Genome Biol 2008

A multi-omic atlas of the human frontal cortex for aging and Alzheimer's disease research.
Philip L De Jager, Yiyi Ma, Cristin McCabe, Jishu Xu, Badri N Vardarajan, Daniel Felsky, Hans-Ulrich Klein, Charles C White, Mette A Peters, Ben Lodgson,[...]. Sci Data 2018

Cistrome Data Browser: expanded datasets and new tools for gene regulatory analysis.
Rongbin Zheng, Changxin Wan, Shenglin Mei, Qian Qin, Qiu Wu, Hanfei Sun, Chen-Hao Chen, Myles Brown, Xiaoyan Zhang, Clifford A Meyer,[...]. Nucleic Acids Res 2019

From reads to insight: a hitchhiker's guide to ATAC-seq data analysis.
Feng Yan, David R Powell, David J Curtis, Nicholas C Wong. Genome Biol 2020

Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position.
Jason D Buenrostro, Paul G Giresi, Lisa C Zaba, Howard Y Chang, William J Greenleaf. Nat Methods 2013

Shared genetic effects on chromatin and gene expression indicate a role for enhancer priming in immune response.
Kaur Alasoo, Julia Rodrigues, Subhankar Mukhopadhyay, Andrew J Knights, Alice L Mann, Kousik Kundu, Christine Hale, Gordon Dougan, Daniel J Gaffney. Nat Genet 2018

Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles.
Aravind Subramanian, Pablo Tamayo, Vamsi K Mootha, Sayan Mukherjee, Benjamin L Ebert, Michael A Gillette, Amanda Paulovich, Scott L Pomeroy, Todd R Golub, Eric S Lander,[...]. Proc Natl Acad Sci U S A 2005

AIAP: A Quality Control and Integrative Analysis Package to Improve ATAC-seq Data Analysis.
Shaopeng Liu, Daofeng Li, Cheng Lyu, Paul M Gontarz, Benpeng Miao, Pamela A F Madden, Ting Wang, Bo Zhang. Genomics Proteomics Bioinformatics 2021

Dynamic regulation of nucleosome positioning in the human genome.
Dustin E Schones, Kairong Cui, Suresh Cuddapah, Tae-Young Roh, Artem Barski, Zhibin Wang, Gang Wei, Keji Zhao. Cell 2008

The chromatin accessibility landscape of primary human cancers.
M Ryan Corces, Jeffrey M Granja, Shadi Shams, Bryan H Louie, Jose A Seoane, Wanding Zhou, Tiago C Silva, Clarice Groeneveld, Christopher K Wong, Seung Woo Cho,[...]. Science 2018

Evaluation of chromatin accessibility in prefrontal cortex of individuals with schizophrenia.
Julien Bryois, Melanie E Garrett, Lingyun Song, Alexias Safi, Paola Giusti-Rodriguez, Graham D Johnson, Annie W Shieh, Alfonso Buil, John F Fullard, Panos Roussos,[...]. Nat Commun 2018

FAIRE (Formaldehyde-Assisted Isolation of Regulatory Elements) isolates active regulatory elements from human chromatin.
Paul G Giresi, Jonghwan Kim, Ryan M McDaniell, Vishwanath R Iyer, Jason D Lieb. Genome Res 2007

High-resolution mapping and characterization of open chromatin across the genome.
Alan P Boyle, Sean Davis, Hennady P Shulha, Paul Meltzer, Elliott H Margulies, Zhiping Weng, Terrence S Furey, Gregory E Crawford. Cell 2008

Fine-mapping cellular QTLs with RASQUAL and ATAC-seq.
Natsuhiko Kumasaka, Andrew J Knights, Daniel J Gaffney. Nat Genet 2016

Computational Methods for Assessing Chromatin Hierarchy.
Pearl Chang, Moloya Gohain, Ming-Ren Yen, Pao-Yang Chen. Comput Struct Biotechnol J 2018

Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.