A citation-based method for searching scientific literature

Guangsheng Pei, Ruifeng Hu, Peilin Jia, Zhongming Zhao. Nucleic Acids Res 2021
Times Cited: 2







List of co-cited articles
articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Fbxl17 is rearranged in breast cancer and loss of its activity leads to increased global O-GlcNAcylation.
Bethany Mason, Susanne Flach, Felipe R Teixeira, Raquel Manzano Garcia, Oscar M Rueda, Jean E Abraham, Carlos Caldas, Paul A W Edwards, Heike Laman. Cell Mol Life Sci 2020
3
50

Challenges for CNV interpretation in clinical molecular karyotyping: lessons learned from a 1001 sample experience.
Karen Buysse, Barbara Delle Chiaie, Rudy Van Coster, Bart Loeys, Anne De Paepe, Geert Mortier, Frank Speleman, Björn Menten. Eur J Med Genet 2009
73
50

A role for XRCC4 in age at diagnosis and breast cancer risk.
Kristina Allen-Brady, Lisa A Cannon-Albright, Susan L Neuhausen, Nicola J Camp. Cancer Epidemiol Biomarkers Prev 2006
22
50


Segmental duplications and copy-number variation in the human genome.
Andrew J Sharp, Devin P Locke, Sean D McGrath, Ze Cheng, Jeffrey A Bailey, Rhea U Vallente, Lisa M Pertz, Royden A Clark, Stuart Schwartz, Rick Segraves,[...]. Am J Hum Genet 2005
664
50



The landscape of somatic copy-number alteration across human cancers.
Rameen Beroukhim, Craig H Mermel, Dale Porter, Guo Wei, Soumya Raychaudhuri, Jerry Donovan, Jordi Barretina, Jesse S Boehm, Jennifer Dobson, Mitsuyoshi Urashima,[...]. Nature 2010
50

IntSIM: An Integrated Simulator of Next-Generation Sequencing Data.
Xiguo Yuan, Junying Zhang, Liying Yang. IEEE Trans Biomed Eng 2017
20
50

Decoding whole-genome mutational signatures in 37 human pan-cancers by denoising sparse autoencoder neural network.
Guangsheng Pei, Ruifeng Hu, Yulin Dai, Zhongming Zhao, Peilin Jia. Oncogene 2020
5
50

Sensitive and accurate detection of copy number variants using read depth of coverage.
Seungtai Yoon, Zhenyu Xuan, Vladimir Makarov, Kenny Ye, Jonathan Sebat. Genome Res 2009
347
50


CNVkit: Genome-Wide Copy Number Detection and Visualization from Targeted DNA Sequencing.
Eric Talevich, A Hunter Shain, Thomas Botton, Boris C Bastian. PLoS Comput Biol 2016
546
50

SeqCNV: a novel method for identification of copy number variations in targeted next-generation sequencing data.
Yong Chen, Li Zhao, Yi Wang, Ming Cao, Violet Gelowani, Mingchu Xu, Smriti A Agrawal, Yumei Li, Stephen P Daiger, Richard Gibbs,[...]. BMC Bioinformatics 2017
31
50


Copy number variation: new insights in genome diversity.
Jennifer L Freeman, George H Perry, Lars Feuk, Richard Redon, Steven A McCarroll, David M Altshuler, Hiroyuki Aburatani, Keith W Jones, Chris Tyler-Smith, Matthew E Hurles,[...]. Genome Res 2006
495
50

USP18 promotes breast cancer growth by upregulating EGFR and activating the AKT/Skp2 pathway.
Yawen Tan, Guanglin Zhou, Xianming Wang, Weicai Chen, Haidong Gao. Int J Oncol 2018
23
50

Combinatorial algorithms for structural variation detection in high-throughput sequenced genomes.
Fereydoun Hormozdiari, Can Alkan, Evan E Eichler, S Cenk Sahinalp. Genome Res 2009
193
50

Paired-end mapping reveals extensive structural variation in the human genome.
Jan O Korbel, Alexander Eckehart Urban, Jason P Affourtit, Brian Godwin, Fabian Grubert, Jan Fredrik Simons, Philip M Kim, Dean Palejev, Nicholas J Carriero, Lei Du,[...]. Science 2007
769
50

Implication of the proliferation and apoptosis associated CSE1L/CAS gene for breast cancer development.
P Behrens, U Brinkmann, F Fogt, N Wernert, A Wellmann. Anticancer Res 2001
38
50

AMOTL1 Promotes Breast Cancer Progression and Is Antagonized by Merlin.
Christophe Couderc, Alizée Boin, Laetitia Fuhrmann, Anne Vincent-Salomon, Vinay Mandati, Yann Kieffer, Fatima Mechta-Grigoriou, Laurence Del Maestro, Philippe Chavrier, David Vallerand,[...]. Neoplasia 2016
23
50


Strong association of de novo copy number mutations with autism.
Jonathan Sebat, B Lakshmi, Dheeraj Malhotra, Jennifer Troge, Christa Lese-Martin, Tom Walsh, Boris Yamrom, Seungtai Yoon, Alex Krasnitz, Jude Kendall,[...]. Science 2007
50

ITGBL1 Is a Runx2 Transcriptional Target and Promotes Breast Cancer Bone Metastasis by Activating the TGFβ Signaling Pathway.
Xiao-Qing Li, Xin Du, Dong-Mei Li, Peng-Zhou Kong, Yan Sun, Pei-Fang Liu, Qing-Shan Wang, Yu-Mei Feng. Cancer Res 2015
57
50

Chromosome copy number variation and breast cancer risk.
S Tchatchou, B Burwinkel. Cytogenet Genome Res 2008
14
50

Retinoic acid-related orphan receptor alpha (RORA) variants and risk of breast cancer.
Mohammad Taheri, Mir Davood Omrani, Rezvan Noroozi, Soudeh Ghafouri-Fard, Arezou Sayad. Breast Dis 2017
8
50

The cancer genome.
Michael R Stratton, Peter J Campbell, P Andrew Futreal. Nature 2009
50


Copy number variations and cancer.
Adam Shlien, David Malkin. Genome Med 2009
169
50

Germline copy number variation and cancer risk.
Roland P Kuiper, Marjolijn J L Ligtenberg, Nicoline Hoogerbrugge, Ad Geurts van Kessel. Curr Opin Genet Dev 2010
77
50

Copy number analysis of whole-genome data using BIC-seq2 and its application to detection of cancer susceptibility variants.
Ruibin Xi, Semin Lee, Yuchao Xia, Tae-Min Kim, Peter J Park. Nucleic Acids Res 2016
64
50


Copy number variation analysis of matched ovarian primary tumors and peritoneal metastasis.
Joel A Malek, Eliane Mery, Yasmin A Mahmoud, Eman K Al-Azwani, Laurence Roger, Ruby Huang, Eva Jouve, Raphael Lis, Jean-Paul Thiery, Denis Querleu,[...]. PLoS One 2011
36
50

SM-RCNV: a statistical method to detect recurrent copy number variations in sequenced samples.
Yaoyao Li, Xiguo Yuan, Junying Zhang, Liying Yang, Jun Bai, Shan Jiang. Genes Genomics 2019
2
50

Evaluation of the BRCA1 interacting genes RAP80 and CCDC98 in familial breast cancer susceptibility.
Ana Osorio, Alicia Barroso, Maria J García, Beatriz Martínez-Delgado, Miguel Urioste, Javier Benítez. Breast Cancer Res Treat 2009
17
50

Computational methods for discovering structural variation with next-generation sequencing.
Paul Medvedev, Monica Stanciu, Michael Brudno. Nat Methods 2009
333
50

Germline copy number variations and cancer predisposition.
Ana Cristina Victorino Krepischi, Peter Lees Pearson, Carla Rosenberg. Future Oncol 2012
50
50

EXCAVATOR: detecting copy number variants from whole-exome sequencing data.
Alberto Magi, Lorenzo Tattini, Ingrid Cifola, Romina D'Aurizio, Matteo Benelli, Eleonora Mangano, Cristina Battaglia, Elena Bonora, Ants Kurg, Marco Seri,[...]. Genome Biol 2013
150
50

Predicting regulatory variants using a dense epigenomic mapped CNN model elucidated the molecular basis of trait-tissue associations.
Guangsheng Pei, Ruifeng Hu, Yulin Dai, Astrid Marilyn Manuel, Zhongming Zhao, Peilin Jia. Nucleic Acids Res 2021
3
50

High-resolution mapping of copy-number alterations with massively parallel sequencing.
Derek Y Chiang, Gad Getz, David B Jaffe, Michael J T O'Kelly, Xiaojun Zhao, Scott L Carter, Carsten Russ, Chad Nusbaum, Matthew Meyerson, Eric S Lander. Nat Methods 2009
351
50

Accurate whole human genome sequencing using reversible terminator chemistry.
David R Bentley, Shankar Balasubramanian, Harold P Swerdlow, Geoffrey P Smith, John Milton, Clive G Brown, Kevin P Hall, Dirk J Evers, Colin L Barnes, Helen R Bignell,[...]. Nature 2008
50

PDZK1 is a novel factor in breast cancer that is indirectly regulated by estrogen through IGF-1R and promotes estrogen-mediated growth.
Hogyoung Kim, Zakaria Y Abd Elmageed, Jihang Ju, Amarjit S Naura, Asim B Abdel-Mageed, Shibu Varughese, Dennis Paul, Suresh Alahari, Andrew Catling, Jong G Kim,[...]. Mol Med 2013
82
50

The Role of PIWIL4, an Argonaute Family Protein, in Breast Cancer.
Zifeng Wang, Na Liu, Shuo Shi, Sanhong Liu, Haifan Lin. J Biol Chem 2016
33
50

Expression of MAGE and BAGE genes in Japanese breast cancers.
T Fujie, M Mori, H Ueo, K Sugimachi, T Akiyoshi. Ann Oncol 1997
43
50

CONDEL: Detecting Copy Number Variation and Genotyping Deletion Zygosity from Single Tumor Samples Using Sequence Data.
Xiguo Yuan, Jun Bai, Junying Zhang, Liying Yang, Junbo Duan, Yaoyao Li, Meihong Gao. IEEE/ACM Trans Comput Biol Bioinform 2020
17
50

The Sequence Alignment/Map format and SAMtools.
Heng Li, Bob Handsaker, Alec Wysoker, Tim Fennell, Jue Ruan, Nils Homer, Gabor Marth, Goncalo Abecasis, Richard Durbin. Bioinformatics 2009
50

A comparison of cosegregation analysis methods for the clinical setting.
John Michael O Rañola, Quanhui Liu, Elisabeth A Rosenthal, Brian H Shirts. Fam Cancer 2018
12
50

1
100

Lineage-Specific Genome Architecture Links Enhancers and Non-coding Disease Variants to Target Gene Promoters.
Biola M Javierre, Oliver S Burren, Steven P Wilder, Roman Kreuzhuber, Steven M Hill, Sven Sewitz, Jonathan Cairns, Steven W Wingett, Csilla Várnai, Michiel J Thiecke,[...]. Cell 2016
418
50



Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.