A citation-based method for searching scientific literature

Ravshan Z Sabirov, Md Rafiqul Islam, Toshiaki Okada, Petr G Merzlyak, Ranokhon S Kurbannazarova, Nargiza A Tsiferova, Yasunobu Okada. Life (Basel) 2021
Times Cited: 5







List of co-cited articles
1 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


HOLE: a program for the analysis of the pore dimensions of ion channel structural models.
O S Smart, J G Neduvelil, X Wang, B A Wallace, M S Sansom. J Mol Graph 1996
40

Macromolecular structure determination using X-rays, neutrons and electrons: recent developments in Phenix.
Dorothee Liebschner, Pavel V Afonine, Matthew L Baker, Gábor Bunkóczi, Vincent B Chen, Tristan I Croll, Bradley Hintze, Li Wei Hung, Swati Jain, Airlie J McCoy,[...]. Acta Crystallogr D Struct Biol 2019
20

Tweety-Homolog 1 Drives Brain Colonization of Gliomas.
Erik Jung, Matthias Osswald, Jonas Blaes, Benedikt Wiestler, Felix Sahm, Torsten Schmenger, Gergely Solecki, Katrin Deumelandt, Felix T Kurz, Ruifan Xie,[...]. J Neurosci 2017
76
20

Ttyh1, a Ca(2+)-binding protein localized to the endoplasmic reticulum, is required for early embryonic development.
Tomohiro Kumada, Yasunari Yamanaka, Ayumi Kitano, Minoru Shibata, Tomonari Awaya, Takeo Kato, Katsuya Okawa, Takaya Abe, Naoko Oshima, Tatsutoshi Nakahata,[...]. Dev Dyn 2010
23
20

Crystal structure of α5β1 integrin ectodomain: atomic details of the fibronectin receptor.
Masamichi Nagae, Suyong Re, Emiko Mihara, Terukazu Nogi, Yuji Sugita, Junichi Takagi. J Cell Biol 2012
151
20

Ttyh1 regulates embryonic neural stem cell properties by enhancing the Notch signaling pathway.
Juwan Kim, Dasol Han, Sung-Hyun Byun, Mookwang Kwon, Jae Youl Cho, Samuel J Pleasure, Keejung Yoon. EMBO Rep 2018
21
20

The tweety Gene Family: From Embryo to Disease.
Rithvik R Nalamalapu, Michelle Yue, Aaron R Stone, Samantha Murphy, Margaret S Saha. Front Mol Neurosci 2021
7
20

The Drosophila melanogaster flightless-I gene involved in gastrulation and muscle degeneration encodes gelsolin-like and leucine-rich repeat domains and is conserved in Caenorhabditis elegans and humans.
H D Campbell, T Schimansky, C Claudianos, N Ozsarac, A B Kasprzak, J N Cotsell, I G Young, H G de Couet, G L Miklos. Proc Natl Acad Sci U S A 1993
118
20


Tweety-homolog (Ttyh) Family Encodes the Pore-forming Subunits of the Swelling-dependent Volume-regulated Anion Channel (VRACswell) in the Brain.
Young-Eun Han, Jea Kwon, Joungha Won, Heeyoung An, Minwoo Wendy Jang, Junsung Woo, Je Sun Lee, Min Gu Park, Bo-Eun Yoon, Seung Eun Lee,[...]. Exp Neurobiol 2019
26
20



Jalview Version 2--a multiple sequence alignment editor and analysis workbench.
Andrew M Waterhouse, James B Procter, David M A Martin, Michèle Clamp, Geoffrey J Barton. Bioinformatics 2009
20


MolProbity: More and better reference data for improved all-atom structure validation.
Christopher J Williams, Jeffrey J Headd, Nigel W Moriarty, Michael G Prisant, Lizbeth L Videau, Lindsay N Deis, Vishal Verma, Daniel A Keedy, Bradley J Hintze, Vincent B Chen,[...]. Protein Sci 2018
20

Cryo-EM structures of the TTYH family reveal a novel architecture for lipid interactions.
Anastasiia Sukalskaia, Monique S Straub, Dawid Deneka, Marta Sawicka, Raimund Dutzler. Nat Commun 2021
4
25

TTYH1 and TTYH2 Serve as LRRC8A-Independent Volume-Regulated Anion Channels in Cancer Cells.
Yeonju Bae, Ajung Kim, Chang-Hoon Cho, Donggyu Kim, Hyun-Gug Jung, Seong-Seop Kim, Jiyun Yoo, Jae-Yong Park, Eun Mi Hwang. Cells 2019
14
20

Tweety-Homolog 1 Facilitates Pain via Enhancement of Nociceptor Excitability and Spinal Synaptic Transmission.
Wen-Juan Han, Sui-Bin Ma, Wen-Bin Wu, Fu-Dong Wang, Xiu-Li Cao, Dong-Hao Wang, Hai-Ning Wu, Rou-Gang Xie, Zhen-Zhen Li, Fei Wang,[...]. Neurosci Bull 2021
4
25

Identification and characterization of a BRAF fusion oncoprotein with retained autoinhibitory domains.
Florian Weinberg, Ricarda Griffin, Martina Fröhlich, Christoph Heining, Sandra Braun, Corinna Spohr, Mary Iconomou, Viola Hollek, Michael Röring, Peter Horak,[...]. Oncogene 2020
13
20

Ttyh1 protein is expressed in glia in vitro and shows elevated expression in activated astrocytes following status epilepticus.
Elzbieta Wiernasz, Aleksandra Kaliszewska, Wojciech Brutkowski, Joanna Bednarczyk, Malgorzata Gorniak, Beata Kaza, Katarzyna Lukasiuk. Neurochem Res 2014
18
20

UCSF ChimeraX: Meeting modern challenges in visualization and analysis.
Thomas D Goddard, Conrad C Huang, Elaine C Meng, Eric F Pettersen, Gregory S Couch, John H Morris, Thomas E Ferrin. Protein Sci 2018
20


ConSurf 2016: an improved methodology to estimate and visualize evolutionary conservation in macromolecules.
Haim Ashkenazy, Shiran Abadi, Eric Martz, Ofer Chay, Itay Mayrose, Tal Pupko, Nir Ben-Tal. Nucleic Acids Res 2016
20

CTFFIND4: Fast and accurate defocus estimation from electron micrographs.
Alexis Rohou, Nikolaus Grigorieff. J Struct Biol 2015
20


High Expression of TTYH3 is Related to Poor Clinical Outcomes in Human Gastric Cancer.
Subbroto Kumar Saha, Polash Kumar Biswas, Minchan Gil, Ssang-Goo Cho. J Clin Med 2019
14
20

The ubiquitin-protein ligase Nedd4-2 differentially interacts with and regulates members of the Tweety family of chloride ion channels.
Yaowu He, Deanne H Hryciw, Melanie L Carroll, Stephen A Myers, Astrid K Whitbread, Sharad Kumar, Philip Poronnik, John D Hooper. J Biol Chem 2008
27
20


Deficiency of Ttyh1 downstream to Notch signaling results in precocious differentiation of neural stem cells.
Hai-Ning Wu, Xiu-Li Cao, Zheng Fang, Yu-Fei Zhang, Wen-Juan Han, Kang-Yi Yue, Yuan Cao, Min-Hua Zheng, Li-Li Wang, Hua Han. Biochem Biophys Res Commun 2019
10
20

Positive-unlabeled convolutional neural networks for particle picking in cryo-electron micrographs.
Tristan Bepler, Andrew Morin, Micah Rapp, Julia Brasch, Lawrence Shapiro, Alex J Noble, Bonnie Berger. Nat Methods 2019
210
20

Dali: a network tool for protein structure comparison.
L Holm, C Sander. Trends Biochem Sci 1995
20

cryoSPARC: algorithms for rapid unsupervised cryo-EM structure determination.
Ali Punjani, John L Rubinstein, David J Fleet, Marcus A Brubaker. Nat Methods 2017
20

Activation mechanism of the calcium-activated chloride channel TMEM16A revealed by cryo-EM.
Cristina Paulino, Valeria Kalienkova, Andy K M Lam, Yvonne Neldner, Raimund Dutzler. Nature 2017
154
20

Upregulated TTYH2 expression is critical for the invasion and migration of U2OS human osteosarcoma cell lines.
Dong Kyu Moon, Yeon Ju Bae, Geuk-Rae Jeong, Chang-Hoon Cho, Sun Chul Hwang. Biochem Biophys Res Commun 2019
10
20

Cryo-EM structure of SARS-CoV-2 ORF3a in lipid nanodiscs.
David M Kern, Ben Sorum, Sonali S Mali, Christopher M Hoel, Savitha Sridharan, Jonathan P Remis, Daniel B Toso, Abhay Kotecha, Diana M Bautista, Stephen G Brohawn. Nat Struct Mol Biol 2021
78
20

Surface expression of TTYH2 is attenuated by direct interaction with β-COP.
Jiwon Ryu, Dong-Gyu Kim, Young-Sun Lee, Yeonju Bae, Ajung Kim, Nammi Park, Eun Mi Hwang, Jae-Yong Park. BMB Rep 2019
7
20

New tools for automated high-resolution cryo-EM structure determination in RELION-3.
Jasenko Zivanov, Takanori Nakane, Björn O Forsberg, Dari Kimanius, Wim Jh Hagen, Erik Lindahl, Sjors Hw Scheres. Elife 2018
20


Expression and evolution of the mammalian brain gene Ttyh1.
Clayton A Matthews, John E Shaw, Jane A Hooper, Ian G Young, Michael F Crouch, Hugh D Campbell. J Neurochem 2007
28
20

Improvement of cryo-EM maps by density modification.
Thomas C Terwilliger, Steven J Ludtke, Randy J Read, Paul D Adams, Pavel V Afonine. Nat Methods 2020
127
20

Cryo-EM structures of the TMEM16A calcium-activated chloride channel.
Shangyu Dang, Shengjie Feng, Jason Tien, Christian J Peters, David Bulkley, Marco Lolicato, Jianhua Zhao, Kathrin Zuberbühler, Wenlei Ye, Lijun Qi,[...]. Nature 2017
182
20

Characterization of tweety gene (ttyh1-3) expression in Xenopus laevis during embryonic development.
Andrew D Halleran, Morgan Sehdev, Brian A Rabe, Ryan W Huyck, Cheyenne C Williams, Margaret S Saha. Gene Expr Patterns 2015
18
20

MotionCor2: anisotropic correction of beam-induced motion for improved cryo-electron microscopy.
Shawn Q Zheng, Eugene Palovcak, Jean-Paul Armache, Kliment A Verba, Yifan Cheng, David A Agard. Nat Methods 2017
20

Highly accurate protein structure prediction with AlphaFold.
John Jumper, Richard Evans, Alexander Pritzel, Tim Green, Michael Figurnov, Olaf Ronneberger, Kathryn Tunyasuvunakool, Russ Bates, Augustin Žídek, Anna Potapenko,[...]. Nature 2021
20

Expression of Ttyh1, a member of the Tweety family in neurons in vitro and in vivo and its potential role in brain pathology.
Marzena Stefaniuk, Lukasz Swiech, Joanna Dzwonek, Katarzyna Lukasiuk. J Neurochem 2010
26
20


TTYH2, a human homologue of the Drosophila melanogaster gene tweety, is up-regulated in colon carcinoma and involved in cell proliferation and cell aggregation.
Yuji Toiyama, Akira Mizoguchi, Kazushi Kimura, Junichirou Hiro, Yasuhiro Inoue, Tomonari Tutumi, Chikao Miki, Masato Kusunoki. World J Gastroenterol 2007
25
20

Highly accurate protein structure prediction for the human proteome.
Kathryn Tunyasuvunakool, Jonas Adler, Zachary Wu, Tim Green, Michal Zielinski, Augustin Žídek, Alex Bridgland, Andrew Cowie, Clemens Meyer, Agata Laydon,[...]. Nature 2021
554
20

Features and development of Coot.
P Emsley, B Lohkamp, W G Scott, K Cowtan. Acta Crystallogr D Biol Crystallogr 2010
20

Human and mouse homologues of the Drosophila melanogaster tweety (tty) gene: a novel gene family encoding predicted transmembrane proteins.
H D Campbell, M Kamei, C Claudianos, E Woollatt, G R Sutherland, Y Suzuki, M Hida, S Sugano, I G Young. Genomics 2000
30
20


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.