A citation-based method for searching scientific literature

Gregory S Olson, Tara A Murray, Ana N Jahn, Dat Mai, Alan H Diercks, Elizabeth S Gold, Alan Aderem. Cell Rep 2021
Times Cited: 3







List of co-cited articles
11 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Itaconate is an anti-inflammatory metabolite that activates Nrf2 via alkylation of KEAP1.
Evanna L Mills, Dylan G Ryan, Hiran A Prag, Dina Dikovskaya, Deepthi Menon, Zbigniew Zaslona, Mark P Jedrychowski, Ana S H Costa, Maureen Higgins, Emily Hams,[...]. Nature 2018
492
100

Succinate is an inflammatory signal that induces IL-1β through HIF-1α.
G M Tannahill, A M Curtis, J Adamik, E M Palsson-McDermott, A F McGettrick, G Goel, C Frezza, N J Bernard, B Kelly, N H Foley,[...]. Nature 2013
100

Itaconate Links Inhibition of Succinate Dehydrogenase with Macrophage Metabolic Remodeling and Regulation of Inflammation.
Vicky Lampropoulou, Alexey Sergushichev, Monika Bambouskova, Sharmila Nair, Emma E Vincent, Ekaterina Loginicheva, Luisa Cervantes-Barragan, Xiucui Ma, Stanley Ching-Cheng Huang, Takla Griss,[...]. Cell Metab 2016
485
100

Host-directed therapy of tuberculosis based on interleukin-1 and type I interferon crosstalk.
Katrin D Mayer-Barber, Bruno B Andrade, Sandra D Oland, Eduardo P Amaral, Daniel L Barber, Jacqueline Gonzales, Steven C Derrick, Ruiru Shi, Nathella Pavan Kumar, Wang Wei,[...]. Nature 2014
451
66

Growth of Mycobacterium tuberculosis in vivo segregates with host macrophage metabolism and ontogeny.
Lu Huang, Evgeniya V Nazarova, Shumin Tan, Yancheng Liu, David G Russell. J Exp Med 2018
177
66

Relevance of the Warburg Effect in Tuberculosis for Host-Directed Therapy.
Bridgette M Cumming, Hayden T Pacl, Adrie J C Steyn. Front Cell Infect Microbiol 2020
10
66

The Immunomodulatory Metabolite Itaconate Modifies NLRP3 and Inhibits Inflammasome Activation.
Alexander Hooftman, Stefano Angiari, Svenja Hester, Sarah E Corcoran, Marah C Runtsch, Chris Ling, Melanie C Ruzek, Peter F Slivka, Anne F McGettrick, Kathy Banahan,[...]. Cell Metab 2020
51
66

Tryptophan biosynthesis protects mycobacteria from CD4 T-cell-mediated killing.
Yanjia J Zhang, Manchi C Reddy, Thomas R Ioerger, Alissa C Rothchild, Veronique Dartois, Brian M Schuster, Andrej Trauner, Deeann Wallis, Stacy Galaviz, Curtis Huttenhower,[...]. Cell 2013
191
66

Cutting Edge: Mycobacterium tuberculosis Induces Aerobic Glycolysis in Human Alveolar Macrophages That Is Required for Control of Intracellular Bacillary Replication.
Laura E Gleeson, Frederick J Sheedy, Eva M Palsson-McDermott, Denise Triglia, Seonadh M O'Leary, Mary P O'Sullivan, Luke A J O'Neill, Joseph Keane. J Immunol 2016
136
66

Succinate Dehydrogenase Supports Metabolic Repurposing of Mitochondria to Drive Inflammatory Macrophages.
Evanna L Mills, Beth Kelly, Angela Logan, Ana S H Costa, Mukund Varma, Clare E Bryant, Panagiotis Tourlomousis, J Henry M Däbritz, Eyal Gottlieb, Isabel Latorre,[...]. Cell 2016
743
66

Irg1 expression in myeloid cells prevents immunopathology during M. tuberculosis infection.
Sharmila Nair, Jeremy P Huynh, Vicky Lampropoulou, Ekaterina Loginicheva, Ekaterina Esaulova, Anshu P Gounder, Adrianus C M Boon, Elizabeth A Schwarzkopf, Tara R Bradstreet, Brian T Edelson,[...]. J Exp Med 2018
79
66

Predicting network activity from high throughput metabolomics.
Shuzhao Li, Youngja Park, Sai Duraisingham, Frederick H Strobel, Nooruddin Khan, Quinlyn A Soltow, Dean P Jones, Bali Pulendran. PLoS Comput Biol 2013
371
33

Ischaemic accumulation of succinate controls reperfusion injury through mitochondrial ROS.
Edward T Chouchani, Victoria R Pell, Edoardo Gaude, Dunja Aksentijević, Stephanie Y Sundier, Ellen L Robb, Angela Logan, Sergiy M Nadtochiy, Emily N J Ord, Anthony C Smith,[...]. Nature 2014
33

Phase II trial of recombinant interferon-alpha2b in patients with advanced intractable multidrug-resistant pulmonary tuberculosis: long-term follow-up.
D Palmero, K Eiguchi, P Rendo, L Castro Zorrilla, E Abbate, L J González Montaner. Int J Tuberc Lung Dis 1999
41
33

High-dose vitamin D3 in adults with pulmonary tuberculosis: a double-blind randomized controlled trial.
Nestan Tukvadze, Ekaterina Sanikidze, Maia Kipiani, Gautam Hebbar, Kirk A Easley, Neeta Shenvi, Russell R Kempker, Jennifer K Frediani, Veriko Mirtskhulava, Jessica A Alvarez,[...]. Am J Clin Nutr 2015
66
33

Inflammatory signaling in human tuberculosis granulomas is spatially organized.
Mohlopheni J Marakalala, Ravikiran M Raju, Kirti Sharma, Yanjia J Zhang, Eliseo A Eugenin, Brendan Prideaux, Isaac B Daudelin, Pei-Yu Chen, Matthew G Booty, Jin Hee Kim,[...]. Nat Med 2016
134
33


Effects of a Health-Partner Intervention on Cardiovascular Risk.
Ibhar Al Mheid, Heval Mohamed Kelli, Yi-An Ko, Muhammad Hammadah, Hina Ahmed, Salim Hayek, Viola Vaccarino, Thomas R Ziegler, Greg Gibson, Michelle Lampl,[...]. J Am Heart Assoc 2016
12
33

Nitric oxide prevents a pathogen-permissive granulocytic inflammation during tuberculosis.
Bibhuti B Mishra, Rustin R Lovewell, Andrew J Olive, Guoliang Zhang, Wenfei Wang, Eliseo Eugenin, Clare M Smith, Jia Yao Phuah, Jarukit E Long, Michelle L Dubuke,[...]. Nat Microbiol 2017
117
33

Prevalence and risk factors for multidrug-resistant tuberculosis in the Republic of Georgia: a population-based study.
N Lomtadze, R Aspindzelashvili, M Janjgava, V Mirtskhulava, A Wright, H M Blumberg, A Salakaia. Int J Tuberc Lung Dis 2009
73
33

Gut microbiota-derived succinate: Friend or foe in human metabolic diseases?
Sonia Fernández-Veledo, Joan Vendrell. Rev Endocr Metab Disord 2019
45
33

Crystal structure of cis-aconitate decarboxylase reveals the impact of naturally occurring human mutations on itaconate synthesis.
Fangfang Chen, Peer Lukat, Azeem Ahmed Iqbal, Kyrill Saile, Volkhard Kaever, Joop van den Heuvel, Wulf Blankenfeldt, Konrad Büssow, Frank Pessler. Proc Natl Acad Sci U S A 2019
15
33

Evaluation of IL-1 Blockade as an Adjunct to Linezolid Therapy for Tuberculosis in Mice and Macaques.
Caylin G Winchell, Bibhuti B Mishra, Jia Yao Phuah, Mohd Saqib, Samantha J Nelson, Pauline Maiello, Chelsea M Causgrove, Cassaundra L Ameel, Brianne Stein, H Jacob Borish,[...]. Front Immunol 2020
8
33

The Mycobacterium marinum ESX-1 system mediates phagosomal permeabilization and type I interferon production via separable mechanisms.
Julia Lienard, Esther Nobs, Victoria Lovins, Elin Movert, Christine Valfridsson, Fredric Carlsson. Proc Natl Acad Sci U S A 2020
21
33


Metabolomic Profiling of Plasma from Patients with Tuberculosis by Use of Untargeted Mass Spectrometry Reveals Novel Biomarkers for Diagnosis.
Susanna K P Lau, Kim-Chung Lee, Shirly O T Curreem, Wang-Ngai Chow, Kelvin K W To, Ivan F N Hung, Deborah T Y Ho, Siddharth Sridhar, Iris W S Li, Vanessa S Y Ding,[...]. J Clin Microbiol 2015
26
33

Profiling the Oxylipin and Endocannabinoid Metabolome by UPLC-ESI-MS/MS in Human Plasma to Monitor Postprandial Inflammation.
Sandra Gouveia-Figueira, Jana Späth, Angela M Zivkovic, Malin L Nording. PLoS One 2015
36
33

Quantitative profiling of oxylipins through comprehensive LC-MS/MS analysis: application in cardiac surgery.
Katrin Strassburg, Annemarie M L Huijbrechts, Kirsten A Kortekaas, Jan H Lindeman, Theresa L Pedersen, Adrie Dane, Ruud Berger, Arjan Brenkman, Thomas Hankemeier, John van Duynhoven,[...]. Anal Bioanal Chem 2012
155
33

Tryptophan catabolism reflects disease activity in human tuberculosis.
Jeffrey M Collins, Amnah Siddiqa, Dean P Jones, Ken Liu, Russell R Kempker, Azhar Nizam, N Sarita Shah, Nazir Ismail, Samuel G Ouma, Nestani Tukvadze,[...]. JCI Insight 2020
15
33

Translocated microbiome composition determines immunological outcome in treated HIV infection.
Krystelle Nganou-Makamdop, Aarthi Talla, Ashish Arunkumar Sharma, Sam Darko, Amy Ransier, Farida Laboune, Jeffrey G Chipman, Gregory J Beilman, Torfi Hoskuldsson, Slim Fourati,[...]. Cell 2021
6
33

Patient outcomes associated with post-tuberculosis lung damage in Malawi: a prospective cohort study.
Jamilah Meghji, Maia Lesosky, Elizabeth Joekes, Peter Banda, Jamie Rylance, Stephen Gordon, Joseph Jacob, Harmien Zonderland, Peter MacPherson, Elizabeth L Corbett,[...]. Thorax 2020
28
33

Biomarkers of Tuberculosis Severity and Treatment Effect: A Directed Screen of 70 Host Markers in a Randomized Clinical Trial.
G B Sigal, M R Segal, A Mathew, L Jarlsberg, M Wang, S Barbero, N Small, K Haynesworth, J L Davis, M Weiner,[...]. EBioMedicine 2017
45
33


Updated guidelines for using Interferon Gamma Release Assays to detect Mycobacterium tuberculosis infection - United States, 2010.
Gerald H Mazurek, John Jereb, Andrew Vernon, Phillip LoBue, Stefan Goldberg, Kenneth Castro. MMWR Recomm Rep 2010
675
33

KEGG: Kyoto Encyclopedia of Genes and Genomes.
H Ogata, S Goto, K Sato, W Fujibuchi, H Bono, M Kanehisa. Nucleic Acids Res 1999
33

Chronic airflow obstruction after successful treatment of multidrug-resistant tuberculosis.
Anthony L Byrne, Ben J Marais, Carole D Mitnick, Frances L Garden, Leonid Lecca, Carmen Contreras, Yaninna Yauri, Fanny Garcia, Guy B Marks. ERJ Open Res 2017
13
33

Role of Granulocyte-Macrophage Colony-Stimulating Factor Production by T Cells during Mycobacterium tuberculosis Infection.
Alissa C Rothchild, Britni Stowell, Girija Goyal, Cláudio Nunes-Alves, Qianting Yang, Kadamba Papavinasasundaram, Christopher M Sassetti, Glenn Dranoff, Xinchun Chen, Jinhee Lee,[...]. mBio 2017
37
33

Reference Standardization for Quantification and Harmonization of Large-Scale Metabolomics.
Ken H Liu, Mary Nellis, Karan Uppal, Chunyu Ma, ViLinh Tran, Yongliang Liang, Douglas I Walker, Dean P Jones. Anal Chem 2020
31
33

Publisher Correction: Mycobacterium tuberculosis carrying a rifampicin drug resistance mutation reprograms macrophage metabolism through cell wall lipid changes.
Nicole C Howard, Nancy D Marin, Mushtaq Ahmed, Bruce A Rosa, John Martin, Monika Bambouskova, Alexey Sergushichev, Ekaterina Loginicheva, Natalia Kurepina, Javier Rangel-Moreno,[...]. Nat Microbiol 2018
2
50

limma powers differential expression analyses for RNA-sequencing and microarray studies.
Matthew E Ritchie, Belinda Phipson, Di Wu, Yifang Hu, Charity W Law, Wei Shi, Gordon K Smyth. Nucleic Acids Res 2015
33

GM-CSF targeted immunomodulation affects host response to M. tuberculosis infection.
Sulayman Benmerzoug, Fabio Vitarelli Marinho, Stéphanie Rose, Claire Mackowiak, David Gosset, Delphine Sedda, Emeline Poisson, Catherine Uyttenhove, Jacques Van Snick, Muazzam Jacobs,[...]. Sci Rep 2018
19
33

Effects of aerosolized interferon-alpha in patients with pulmonary tuberculosis.
S Giosué, M Casarini, L Alemanno, G Galluccio, P Mattia, G Pedicelli, L Rebek, A Bisetti, F Ameglio. Am J Respir Crit Care Med 1998
77
33

Reference Standardization for Mass Spectrometry and High-resolution Metabolomics Applications to Exposome Research.
Young-Mi Go, Douglas I Walker, Yongliang Liang, Karan Uppal, Quinlyn A Soltow, ViLinh Tran, Frederick Strobel, Arshed A Quyyumi, Thomas R Ziegler, Kurt D Pennell,[...]. Toxicol Sci 2015
108
33

Declines in Lung Function After Antiretroviral Therapy Initiation in Adults With Human Immunodeficiency Virus and Tuberculosis: A Potential Manifestation of Respiratory Immune Reconstitution Inflammatory Syndrome.
Sara C Auld, Pholo Maenetje, Shruthi Ravimohan, Drew Weissman, Itai Ncube, Mandla Mlotshwa, Nelly Ratsela, William Chase, Mboyo-Di-Tamba Vangu, Robert Wallis,[...]. Clin Infect Dis 2020
5
33

Type I interferon-driven susceptibility to Mycobacterium tuberculosis is mediated by IL-1Ra.
Daisy X Ji, Livia H Yamashiro, Katherine J Chen, Naofumi Mukaida, Igor Kramnik, K Heran Darwin, Russell E Vance. Nat Microbiol 2019
33
33

apLCMS--adaptive processing of high-resolution LC/MS data.
Tianwei Yu, Youngja Park, Jennifer M Johnson, Dean P Jones. Bioinformatics 2009
188
33

Metabolomics and Mycobacterial Disease: Don't Forget the Bioinformatics.
Jeffrey M Collins, Russell R Kempker, Thomas R Ziegler, Henry M Blumberg, Dean P Jones. Ann Am Thorac Soc 2016
3
33

Mycobacterium tuberculosis carrying a rifampicin drug resistance mutation reprograms macrophage metabolism through cell wall lipid changes.
Nicole C Howard, Nancy D Marin, Mushtaq Ahmed, Bruce A Rosa, John Martin, Monika Bambouskova, Alexey Sergushichev, Ekaterina Loginicheva, Natalia Kurepina, Javier Rangel-Moreno,[...]. Nat Microbiol 2018
39
33

Serum IL-1β and IL-18 correlate with ESR and CRP in multidrug-resistant tuberculosis patients.
Yanli Wang, Chunmei Hu, Zailiang Wang, Hui Kong, Weiping Xie, Hong Wang. J Biomed Res 2015
6
33

Infection with Mycobacterium tuberculosis induces the Warburg effect in mouse lungs.
Lanbo Shi, Hugh Salamon, Eliseo A Eugenin, Richard Pine, Andrea Cooper, Maria L Gennaro. Sci Rep 2015
107
33


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.