A citation-based method for searching scientific literature

Olivia Harding, Chantell S Evans, Junqiang Ye, Jonah Cheung, Tom Maniatis, Erika L F Holzbaur. Proc Natl Acad Sci U S A 2021
Times Cited: 5







List of co-cited articles
24 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


RAB7A phosphorylation by TBK1 promotes mitophagy via the PINK-PARKIN pathway.
J-M Heo, A Ordureau, S Swarup, J A Paulo, K Shen, D M Sabatini, J W Harper. Sci Adv 2018
55
60

Phosphorylation of OPTN by TBK1 enhances its binding to Ub chains and promotes selective autophagy of damaged mitochondria.
Benjamin Richter, Danielle A Sliter, Lina Herhaus, Alexandra Stolz, Chunxin Wang, Petra Beli, Gabriele Zaffagnini, Philipp Wild, Sascha Martens, Sebastian A Wagner,[...]. Proc Natl Acad Sci U S A 2016
355
60

Exome sequencing in amyotrophic lateral sclerosis identifies risk genes and pathways.
Elizabeth T Cirulli, Brittany N Lasseigne, Slavé Petrovski, Peter C Sapp, Patrick A Dion, Claire S Leblond, Julien Couthouis, Yi-Fan Lu, Quanli Wang, Brian J Krueger,[...]. Science 2015
572
40

Quantitative proteomics reveal a feedforward mechanism for mitochondrial PARKIN translocation and ubiquitin chain synthesis.
Alban Ordureau, Shireen A Sarraf, David M Duda, Jin-Mi Heo, Mark P Jedrychowski, Vladislav O Sviderskiy, Jennifer L Olszewski, James T Koerber, Tiao Xie, Sean A Beausoleil,[...]. Mol Cell 2014
357
40

Recruitment and Activation of the ULK1/Atg1 Kinase Complex in Selective Autophagy.
Eleonora Turco, Dorotea Fracchiolla, Sascha Martens. J Mol Biol 2020
40
40

PINK1 phosphorylates ubiquitin to activate Parkin E3 ubiquitin ligase activity.
Lesley A Kane, Michael Lazarou, Adam I Fogel, Yan Li, Koji Yamano, Shireen A Sarraf, Soojay Banerjee, Richard J Youle. J Cell Biol 2014
679
40



Dynamics of PARKIN-Dependent Mitochondrial Ubiquitylation in Induced Neurons and Model Systems Revealed by Digital Snapshot Proteomics.
Alban Ordureau, Joao A Paulo, Wei Zhang, Tim Ahfeldt, Jiuchun Zhang, Erin F Cohn, Zhonggang Hou, Jin-Mi Heo, Lee L Rubin, Sachdev S Sidhu,[...]. Mol Cell 2018
79
40

Mitophagy inhibits amyloid-β and tau pathology and reverses cognitive deficits in models of Alzheimer's disease.
Evandro F Fang, Yujun Hou, Konstantinos Palikaras, Bryan A Adriaanse, Jesse S Kerr, Beimeng Yang, Sofie Lautrup, Md Mahdi Hasan-Olive, Domenica Caponio, Xiuli Dan,[...]. Nat Neurosci 2019
413
40

Structural insights into the interaction and disease mechanism of neurodegenerative disease-associated optineurin and TBK1 proteins.
Faxiang Li, Xingqiao Xie, Yingli Wang, Jianping Liu, Xiaofang Cheng, Yujiao Guo, Yukang Gong, Shichen Hu, Lifeng Pan. Nat Commun 2016
52
40

Spatiotemporal Control of ULK1 Activation by NDP52 and TBK1 during Selective Autophagy.
Jose Norberto S Vargas, Chunxin Wang, Eric Bunker, Ling Hao, Dragan Maric, Giampietro Schiavo, Felix Randow, Richard J Youle. Mol Cell 2019
161
40

Association of Mutations in TBK1 With Sporadic and Familial Amyotrophic Lateral Sclerosis and Frontotemporal Dementia.
Axel Freischmidt, Kathrin Müller, Albert C Ludolph, Jochen H Weishaupt, Peter M Andersen. JAMA Neurol 2017
44
40

CellProfiler 3.0: Next-generation image processing for biology.
Claire McQuin, Allen Goodman, Vasiliy Chernyshev, Lee Kamentsky, Beth A Cimini, Kyle W Karhohs, Minh Doan, Liya Ding, Susanne M Rafelski, Derek Thirstrup,[...]. PLoS Biol 2018
492
40

ULK complex organization in autophagy by a C-shaped FIP200 N-terminal domain dimer.
Xiaoshan Shi, Adam L Yokom, Chunxin Wang, Lindsey N Young, Richard J Youle, James H Hurley. J Cell Biol 2020
21
40

Mitophagy and Quality Control Mechanisms in Mitochondrial Maintenance.
Sarah Pickles, Pierre Vigié, Richard J Youle. Curr Biol 2018
584
40

The ubiquitin kinase PINK1 recruits autophagy receptors to induce mitophagy.
Michael Lazarou, Danielle A Sliter, Lesley A Kane, Shireen A Sarraf, Chunxin Wang, Jonathon L Burman, Dionisia P Sideris, Adam I Fogel, Richard J Youle. Nature 2015
40

Phosphorylation of the autophagy receptor optineurin restricts Salmonella growth.
Philipp Wild, Hesso Farhan, David G McEwan, Sebastian Wagner, Vladimir V Rogov, Nathan R Brady, Benjamin Richter, Jelena Korac, Oliver Waidmann, Chunaram Choudhary,[...]. Science 2011
838
40


Haploinsufficiency of TBK1 causes familial ALS and fronto-temporal dementia.
Axel Freischmidt, Thomas Wieland, Benjamin Richter, Wolfgang Ruf, Veronique Schaeffer, Kathrin Müller, Nicolai Marroquin, Frida Nordin, Annemarie Hübers, Patrick Weydt,[...]. Nat Neurosci 2015
474
40


LRRK2 Parkinson disease mutations enhance its microtubule association.
Lauren R Kett, Daniela Boassa, Cherry Cheng-Ying Ho, Hardy J Rideout, Junru Hu, Masako Terada, Mark Ellisman, William T Dauer. Hum Mol Genet 2012
112
40


Building and decoding ubiquitin chains for mitophagy.
J Wade Harper, Alban Ordureau, Jin-Mi Heo. Nat Rev Mol Cell Biol 2018
229
40

Proteasome and p97 mediate mitophagy and degradation of mitofusins induced by Parkin.
Atsushi Tanaka, Megan M Cleland, Shan Xu, Derek P Narendra, Der-Fen Suen, Mariusz Karbowski, Richard J Youle. J Cell Biol 2010
882
20

Heterozygous Tbk1 loss has opposing effects in early and late stages of ALS in mice.
David Brenner, Kirsten Sieverding, Clara Bruno, Patrick Lüningschrör, Eva Buck, Simon Mungwa, Lena Fischer, Sarah J Brockmann, Johannes Ulmer, Corinna Bliederhäuser,[...]. J Exp Med 2019
28
20

Landscape of the PARKIN-dependent ubiquitylome in response to mitochondrial depolarization.
Shireen A Sarraf, Malavika Raman, Virginia Guarani-Pereira, Mathew E Sowa, Edward L Huttlin, Steven P Gygi, J Wade Harper. Nature 2013
617
20

Functional dissection of the TBK1 molecular network.
Adriana Goncalves, Tilmann Bürckstümmer, Evelyn Dixit, Ruth Scheicher, Maria W Górna, Evren Karayel, Cristina Sugar, Alexey Stukalov, Tiina Berg, Robert Kralovics,[...]. PLoS One 2011
83
20

ilastik: interactive machine learning for (bio)image analysis.
Stuart Berg, Dominik Kutra, Thorben Kroeger, Christoph N Straehle, Bernhard X Kausler, Carsten Haubold, Martin Schiegg, Janez Ales, Thorsten Beier, Markus Rudy,[...]. Nat Methods 2019
330
20


Ubiquitin is phosphorylated by PINK1 to activate parkin.
Fumika Koyano, Kei Okatsu, Hidetaka Kosako, Yasushi Tamura, Etsu Go, Mayumi Kimura, Yoko Kimura, Hikaru Tsuchiya, Hidehito Yoshihara, Takatsugu Hirokawa,[...]. Nature 2014
812
20

ATG2 transports lipids to promote autophagosome biogenesis.
Diana P Valverde, Shenliang Yu, Venkata Boggavarapu, Nikit Kumar, Joshua A Lees, Thomas Walz, Karin M Reinisch, Thomas J Melia. J Cell Biol 2019
157
20

LC3/GABARAPs drive ubiquitin-independent recruitment of Optineurin and NDP52 to amplify mitophagy.
Benjamin Scott Padman, Thanh Ngoc Nguyen, Louise Uoselis, Marvin Skulsuppaisarn, Lan K Nguyen, Michael Lazarou. Nat Commun 2019
75
20

The Loss of TBK1 Kinase Activity in Motor Neurons or in All Cell Types Differentially Impacts ALS Disease Progression in SOD1 Mice.
Valeria Gerbino, Esther Kaunga, Junqiang Ye, Daniele Canzio, Sean O'Keeffe, Noam D Rudnick, Paolo Guarnieri, Cathleen M Lutz, Tom Maniatis. Neuron 2020
27
20

TBK1 mutation frequencies in French frontotemporal dementia and amyotrophic lateral sclerosis cohorts.
Isabelle Le Ber, Anne De Septenville, Stéphanie Millecamps, Agnès Camuzat, Paola Caroppo, Philippe Couratier, Frédéric Blanc, Lucette Lacomblez, François Sellal, Marie-Céline Fleury,[...]. Neurobiol Aging 2015
51
20

Mitochondrial alterations in dorsal root ganglion cells in sporadic amyotrophic lateral sclerosis.
Shoichi Sasaki, Yoshiharu Horie, Makoto Iwata. Acta Neuropathol 2007
46
20

LC3 conjugation system in mammalian autophagy.
Isei Tanida, Takashi Ueno, Eiki Kominami. Int J Biochem Cell Biol 2004
920
20

Fiji: an open-source platform for biological-image analysis.
Johannes Schindelin, Ignacio Arganda-Carreras, Erwin Frise, Verena Kaynig, Mark Longair, Tobias Pietzsch, Stephan Preibisch, Curtis Rueden, Stephan Saalfeld, Benjamin Schmid,[...]. Nat Methods 2012
20

Inflammation and mitochondrial dysfunction: A vicious circle in neurodegenerative disorders?
Jack van Horssen, Pauline van Schaik, Maarten Witte. Neurosci Lett 2019
75
20

A Potent and Selective ULK1 Inhibitor Suppresses Autophagy and Sensitizes Cancer Cells to Nutrient Stress.
Katie R Martin, Stephanie L Celano, Abigail R Solitro, Hakan Gunaydin, Mark Scott, Ronan C O'Hagan, Stuart D Shumway, Peter Fuller, Jeffrey P MacKeigan. iScience 2018
59
20

Conditional MitoTimer reporter mice for assessment of mitochondrial structure, oxidative stress, and mitophagy.
Rebecca J Wilson, Joshua C Drake, Di Cui, Mei Zhang, Heather M Perry, Jennifer A Kashatus, Christine M Kusminski, Philipp E Scherer, David F Kashatus, Mark D Okusa,[...]. Mitochondrion 2019
25
20

Parkin is recruited selectively to impaired mitochondria and promotes their autophagy.
Derek Narendra, Atsushi Tanaka, Der-Fen Suen, Richard J Youle. J Cell Biol 2008
20

ALS-associated missense and nonsense TBK1 mutations can both cause loss of kinase function.
Martina de Majo, Simon D Topp, Bradley N Smith, Agnes L Nishimura, Han-Jou Chen, Athina Soragia Gkazi, Jack Miller, Chun Hao Wong, Caroline Vance, Frank Baas,[...]. Neurobiol Aging 2018
40
20

PINK1/Parkin Influences Cell Cycle by Sequestering TBK1 at Damaged Mitochondria, Inhibiting Mitosis.
Shireen A Sarraf, Dionisia P Sideris, Nikolaos Giagtzoglou, Lina Ni, Mark W Kankel, Anindya Sen, Lauren E Bochicchio, Chiu-Hui Huang, Samuel C Nussenzweig, Stuart H Worley,[...]. Cell Rep 2019
25
20

Structure and ubiquitination-dependent activation of TANK-binding kinase 1.
Daqi Tu, Zehua Zhu, Alicia Y Zhou, Cai-hong Yun, Kyung-Eun Lee, Angela V Toms, Yiqun Li, Gavin P Dunn, Edmond Chan, Tran Thai,[...]. Cell Rep 2013
109
20

TBK1-mediated phosphorylation of LC3C and GABARAP-L2 controls autophagosome shedding by ATG4 protease.
Lina Herhaus, Ramachandra M Bhaskara, Alf Håkon Lystad, Uxía Gestal-Mato, Adriana Covarrubias-Pinto, Florian Bonn, Anne Simonsen, Gerhard Hummer, Ivan Dikic. EMBO Rep 2020
26
20

Molecular basis of Tank-binding kinase 1 activation by transautophosphorylation.
Xiaolei Ma, Elizabeth Helgason, Qui T Phung, Clifford L Quan, Rekha S Iyer, Michelle W Lee, Krista K Bowman, Melissa A Starovasnik, Erin C Dueber. Proc Natl Acad Sci U S A 2012
131
20

Mitochondria, ER, and nuclear membrane defects reveal early mechanisms for upper motor neuron vulnerability with respect to TDP-43 pathology.
Mukesh Gautam, Javier H Jara, Nuran Kocak, Lauren E Rylaarsdam, Ki Dong Kim, Eileen H Bigio, P Hande Özdinler. Acta Neuropathol 2019
35
20

LC3, a mammalian homologue of yeast Apg8p, is localized in autophagosome membranes after processing.
Y Kabeya, N Mizushima, T Ueno, A Yamamoto, T Kirisako, T Noda, E Kominami, Y Ohsumi, T Yoshimori. EMBO J 2000
20

Crystal structure and mechanism of activation of TANK-binding kinase 1.
Amede Larabi, Juliette M Devos, Sze-Ling Ng, Max H Nanao, Adam Round, Tom Maniatis, Daniel Panne. Cell Rep 2013
112
20


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.