A citation-based method for searching scientific literature

Longjian Niu, Wei Shen, Zhaoying Shi, Yongjun Tan, Na He, Jing Wan, Jialei Sun, Yuedong Zhang, Yingzhang Huang, Wenjing Wang, Chao Fang, Jiashuo Li, Piaopiao Zheng, Edwin Cheung, Yonglong Chen, Li Li, Chunhui Hou. Nat Genet 2021
Times Cited: 8







List of co-cited articles
84 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Targeted Degradation of CTCF Decouples Local Insulation of Chromosome Domains from Genomic Compartmentalization.
Elphège P Nora, Anton Goloborodko, Anne-Laure Valton, Johan H Gibcus, Alec Uebersohn, Nezar Abdennur, Job Dekker, Leonid A Mirny, Benoit G Bruneau. Cell 2017
725
62

Key role for CTCF in establishing chromatin structure in human embryos.
Xuepeng Chen, Yuwen Ke, Keliang Wu, Han Zhao, Yaoyu Sun, Lei Gao, Zhenbo Liu, Jingye Zhang, Wenrong Tao, Zhenzhen Hou,[...]. Nature 2019
47
62

Comprehensive mapping of long-range interactions reveals folding principles of the human genome.
Erez Lieberman-Aiden, Nynke L van Berkum, Louise Williams, Maxim Imakaev, Tobias Ragoczy, Agnes Telling, Ido Amit, Bryan R Lajoie, Peter J Sabo, Michael O Dorschner,[...]. Science 2009
62

3D Chromatin Structures of Mature Gametes and Structural Reprogramming during Mammalian Embryogenesis.
Yuwen Ke, Yanan Xu, Xuepeng Chen, Songjie Feng, Zhenbo Liu, Yaoyu Sun, Xuelong Yao, Fangzhen Li, Wei Zhu, Lei Gao,[...]. Cell 2017
226
62

Polycomb Group Proteins Regulate Chromatin Architecture in Mouse Oocytes and Early Embryos.
Zhenhai Du, Hui Zheng, Yumiko K Kawamura, Ke Zhang, Johanna Gassler, Sean Powell, Qianhua Xu, Zili Lin, Kai Xu, Qian Zhou,[...]. Mol Cell 2020
56
62

Allelic reprogramming of 3D chromatin architecture during early mammalian development.
Zhenhai Du, Hui Zheng, Bo Huang, Rui Ma, Jingyi Wu, Xianglin Zhang, Jing He, Yunlong Xiang, Qiujun Wang, Yuanyuan Li,[...]. Nature 2017
235
62

A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping.
Suhas S P Rao, Miriam H Huntley, Neva C Durand, Elena K Stamenova, Ivan D Bochkov, James T Robinson, Adrian L Sanborn, Ido Machol, Arina D Omer, Eric S Lander,[...]. Cell 2014
50

Systemic Loss and Gain of Chromatin Architecture throughout Zebrafish Development.
Lucas J T Kaaij, Robin H van der Weide, René F Ketting, Elzo de Wit. Cell Rep 2018
69
50

Chromatin architecture transitions from zebrafish sperm through early embryogenesis.
Candice L Wike, Yixuan Guo, Mengyao Tan, Ryohei Nakamura, Dana Klatt Shaw, Noelia Díaz, Aneasha F Whittaker-Tademy, Neva C Durand, Erez Lieberman Aiden, Juan M Vaquerizas,[...]. Genome Res 2021
11
50

Topological domains in mammalian genomes identified by analysis of chromatin interactions.
Jesse R Dixon, Siddarth Selvaraj, Feng Yue, Audrey Kim, Yan Li, Yin Shen, Ming Hu, Jun S Liu, Bing Ren. Nature 2012
50

Cohesin Loss Eliminates All Loop Domains.
Suhas S P Rao, Su-Chen Huang, Brian Glenn St Hilaire, Jesse M Engreitz, Elizabeth M Perez, Kyong-Rim Kieffer-Kwon, Adrian L Sanborn, Sarah E Johnstone, Gavin D Bascom, Ivan D Bochkov,[...]. Cell 2017
769
50

Embryonic stem cell potency fluctuates with endogenous retrovirus activity.
Todd S Macfarlan, Wesley D Gifford, Shawn Driscoll, Karen Lettieri, Helen M Rowe, Dario Bonanomi, Amy Firth, Oded Singer, Didier Trono, Samuel L Pfaff. Nature 2012
606
50

Genome-lamina interactions are established de novo in the early mouse embryo.
Máté Borsos, Sara M Perricone, Tamás Schauer, Julien Pontabry, Kim L de Luca, Sandra S de Vries, Elias R Ruiz-Morales, Maria-Elena Torres-Padilla, Jop Kind. Nature 2019
54
50

Single-nucleus Hi-C reveals unique chromatin reorganization at oocyte-to-zygote transition.
Ilya M Flyamer, Johanna Gassler, Maxim Imakaev, Hugo B Brandão, Sergey V Ulianov, Nezar Abdennur, Sergey V Razin, Leonid A Mirny, Kikuë Tachibana-Konwalski. Nature 2017
380
50

CTCF looping is established during gastrulation in medaka embryos.
Ryohei Nakamura, Yuichi Motai, Masahiko Kumagai, Candice L Wike, Haruyo Nishiyama, Yoichiro Nakatani, Neva C Durand, Kaori Kondo, Takashi Kondo, Tatsuya Tsukahara,[...]. Genome Res 2021
12
50

Parental-to-embryo switch of chromosome organization in early embryogenesis.
Samuel Collombet, Noémie Ranisavljevic, Takashi Nagano, Csilla Varnai, Tarak Shisode, Wing Leung, Tristan Piolot, Rafael Galupa, Maud Borensztein, Nicolas Servant,[...]. Nature 2020
54
50

Chromatin Architecture Emerges during Zygotic Genome Activation Independent of Transcription.
Clemens B Hug, Alexis G Grimaldi, Kai Kruse, Juan M Vaquerizas. Cell 2017
238
50

Spatial partitioning of the regulatory landscape of the X-inactivation centre.
Elphège P Nora, Bryan R Lajoie, Edda G Schulz, Luca Giorgetti, Ikuhiro Okamoto, Nicolas Servant, Tristan Piolot, Nynke L van Berkum, Johannes Meisig, John Sedat,[...]. Nature 2012
37

Condensin-driven remodelling of X chromosome topology during dosage compensation.
Emily Crane, Qian Bian, Rachel Patton McCord, Bryan R Lajoie, Bayly S Wheeler, Edward J Ralston, Satoru Uzawa, Job Dekker, Barbara J Meyer. Nature 2015
411
37

Formation of Chromosomal Domains by Loop Extrusion.
Geoffrey Fudenberg, Maxim Imakaev, Carolyn Lu, Anton Goloborodko, Nezar Abdennur, Leonid A Mirny. Cell Rep 2016
816
37

Topologically associating domains and chromatin loops depend on cohesin and are regulated by CTCF, WAPL, and PDS5 proteins.
Gordana Wutz, Csilla Várnai, Kota Nagasaka, David A Cisneros, Roman R Stocsits, Wen Tang, Stefan Schoenfelder, Gregor Jessberger, Matthias Muhar, M Julius Hossain,[...]. EMBO J 2017
328
37

Conservation and innovation in the DUX4-family gene network.
Jennifer L Whiddon, Ashlee T Langford, Chao-Jen Wong, Jun Wen Zhong, Stephen J Tapscott. Nat Genet 2017
158
37

DUX-family transcription factors regulate zygotic genome activation in placental mammals.
Alberto De Iaco, Evarist Planet, Andrea Coluccio, Sonia Verp, Julien Duc, Didier Trono. Nat Genet 2017
251
37

Analysis of Genome Architecture during SCNT Reveals a Role of Cohesin in Impeding Minor ZGA.
Ke Zhang, Dan-Ya Wu, Hui Zheng, Yao Wang, Qiao-Ran Sun, Xin Liu, Li-Yan Wang, Wen-Jing Xiong, Qiujun Wang, James D P Rhodes,[...]. Mol Cell 2020
19
37

Conserved roles of mouse DUX and human DUX4 in activating cleavage-stage genes and MERVL/HERVL retrotransposons.
Peter G Hendrickson, Jessie A Doráis, Edward J Grow, Jennifer L Whiddon, Jong-Won Lim, Candice L Wike, Bradley D Weaver, Christian Pflueger, Benjamin R Emery, Aaron L Wilcox,[...]. Nat Genet 2017
307
37

CTCF is a barrier for 2C-like reprogramming.
Teresa Olbrich, Maria Vega-Sendino, Desiree Tillo, Wei Wu, Nicholas Zolnerowich, Raphael Pavani, Andy D Tran, Catherine N Domingo, Mariajose Franco, Marta Markiewicz-Potoczny,[...]. Nat Commun 2021
10
37

Phase separation drives heterochromatin domain formation.
Amy R Strom, Alexander V Emelyanov, Mustafa Mir, Dmitry V Fyodorov, Xavier Darzacq, Gary H Karpen. Nature 2017
827
37

Transcriptionally active HERV-H retrotransposons demarcate topologically associating domains in human pluripotent stem cells.
Yanxiao Zhang, Ting Li, Sebastian Preissl, Maria Luisa Amaral, Jonathan D Grinstein, Elie N Farah, Eugin Destici, Yunjiang Qiu, Rong Hu, Ah Young Lee,[...]. Nat Genet 2019
98
37

A switch between topological domains underlies HoxD genes collinearity in mouse limbs.
Guillaume Andrey, Thomas Montavon, Bénédicte Mascrez, Federico Gonzalez, Daan Noordermeer, Marion Leleu, Didier Trono, François Spitz, Denis Duboule. Science 2013
271
25

Juicer Provides a One-Click System for Analyzing Loop-Resolution Hi-C Experiments.
Neva C Durand, Muhammad S Shamim, Ido Machol, Suhas S P Rao, Miriam H Huntley, Eric S Lander, Erez Lieberman Aiden. Cell Syst 2016
782
25

Loss of maternal CTCF is associated with peri-implantation lethality of Ctcf null embryos.
James M Moore, Natalia A Rabaia, Leslie E Smith, Sara Fagerlie, Kay Gurley, Dmitry Loukinov, Christine M Disteche, Steven J Collins, Christopher J Kemp, Victor V Lobanenkov,[...]. PLoS One 2012
75
25

Three-dimensional folding and functional organization principles of the Drosophila genome.
Tom Sexton, Eitan Yaffe, Ephraim Kenigsberg, Frédéric Bantignies, Benjamin Leblanc, Michael Hoichman, Hugues Parrinello, Amos Tanay, Giacomo Cavalli. Cell 2012
25


Organizational principles of 3D genome architecture.
M Jordan Rowley, Victor G Corces. Nat Rev Genet 2018
405
25

Chromatin Domains: The Unit of Chromosome Organization.
Jesse R Dixon, David U Gorkin, Bing Ren. Mol Cell 2016
379
25


ATAC-seq footprinting unravels kinetics of transcription factor binding during zygotic genome activation.
Mette Bentsen, Philipp Goymann, Hendrik Schultheis, Kathrin Klee, Anastasiia Petrova, René Wiegandt, Annika Fust, Jens Preussner, Carsten Kuenne, Thomas Braun,[...]. Nat Commun 2020
58
25

3D Chromatin Architecture of Large Plant Genomes Determined by Local A/B Compartments.
Pengfei Dong, Xiaoyu Tu, Po-Yu Chu, Peitao Lü, Ning Zhu, Donald Grierson, Baijuan Du, Pinghua Li, Silin Zhong. Mol Plant 2017
128
25

Comparison of computational methods for the identification of topologically associating domains.
Marie Zufferey, Daniele Tavernari, Elisa Oricchio, Giovanni Ciriello. Genome Biol 2018
78
25

Evolutionarily Conserved Principles Predict 3D Chromatin Organization.
M Jordan Rowley, Michael H Nichols, Xiaowen Lyu, Masami Ando-Kuri, I Sarahi M Rivera, Karen Hermetz, Ping Wang, Yijun Ruan, Victor G Corces. Mol Cell 2017
251
25

Single-cell imaging of genome organization and dynamics.
Liangqi Xie, Zhe Liu. Mol Syst Biol 2021
10
25

Liquid chromatin Hi-C characterizes compartment-dependent chromatin interaction dynamics.
Houda Belaghzal, Tyler Borrman, Andrew D Stephens, Denis L Lafontaine, Sergey V Venev, Zhiping Weng, John F Marko, Job Dekker. Nat Genet 2021
25
25


TADs or no TADS: Lessons From Single-cell Imaging of Chromosome Architecture.
Andrés M Cardozo Gizzi, Diego I Cattoni, Marcelo Nollmann. J Mol Biol 2020
6
33

Chromosome territories.
Thomas Cremer, Marion Cremer. Cold Spring Harb Perspect Biol 2010
673
25

Principles of genome folding into topologically associating domains.
Quentin Szabo, Frédéric Bantignies, Giacomo Cavalli. Sci Adv 2019
207
25

Genome-Scale Imaging of the 3D Organization and Transcriptional Activity of Chromatin.
Jun-Han Su, Pu Zheng, Seon S Kinrot, Bogdan Bintu, Xiaowei Zhuang. Cell 2020
103
25

Integrated spatial genomics reveals global architecture of single nuclei.
Yodai Takei, Jina Yun, Shiwei Zheng, Noah Ollikainen, Nico Pierson, Jonathan White, Sheel Shah, Julian Thomassie, Shengbao Suo, Chee-Huat Linus Eng,[...]. Nature 2021
61
25

The asynchronous establishment of chromatin 3D architecture between in vitro fertilized and uniparental preimplantation pig embryos.
Feifei Li, Danyang Wang, Ruigao Song, Chunwei Cao, Zhihua Zhang, Yu Wang, Xiaoli Li, Jiaojiao Huang, Qiang Liu, Naipeng Hou,[...]. Genome Biol 2020
5
40

Chromatin structure dynamics during the mitosis-to-G1 phase transition.
Haoyue Zhang, Daniel J Emerson, Thomas G Gilgenast, Katelyn R Titus, Yemin Lan, Peng Huang, Di Zhang, Hongxin Wang, Cheryl A Keller, Belinda Giardine,[...]. Nature 2019
75
25


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.