A citation-based method for searching scientific literature

Xudong Zhao, Qiang Shan, Hai-Hui Xue. Nat Rev Immunol 2022
Times Cited: 20







List of co-cited articles
79 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Differentiation and persistence of memory CD8(+) T cells depend on T cell factor 1.
Xinyuan Zhou, Shuyang Yu, Dong-Mei Zhao, John T Harty, Vladimir P Badovinac, Hai-Hui Xue. Immunity 2010
413
35

Tcf1 and Lef1 transcription factors establish CD8(+) T cell identity through intrinsic HDAC activity.
Shaojun Xing, Fengyin Li, Zhouhao Zeng, Yunjie Zhao, Shuyang Yu, Qiang Shan, Yalan Li, Farrah C Phillips, Peterson K Maina, Hank H Qi,[...]. Nat Immunol 2016
115
20

Essential role of the Wnt pathway effector Tcf-1 for the establishment of functional CD8 T cell memory.
Grégoire Jeannet, Caroline Boudousquié, Noémie Gardiol, Joonsoo Kang, Joerg Huelsken, Werner Held. Proc Natl Acad Sci U S A 2010
220
20

Lineage-Determining Transcription Factor TCF-1 Initiates the Epigenetic Identity of T Cells.
John L Johnson, Georgios Georgakilas, Jelena Petrovic, Makoto Kurachi, Stanley Cai, Christelle Harly, Warren S Pear, Avinash Bhandoola, E John Wherry, Golnaz Vahedi. Immunity 2018
106
20

Fast gapped-read alignment with Bowtie 2.
Ben Langmead, Steven L Salzberg. Nat Methods 2012
20

Subsets of exhausted CD8+ T cells differentially mediate tumor control and respond to checkpoint blockade.
Brian C Miller, Debattama R Sen, Rose Al Abosy, Kevin Bi, Yamini V Virkud, Martin W LaFleur, Kathleen B Yates, Ana Lako, Kristen Felt, Girish S Naik,[...]. Nat Immunol 2019
534
20

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2.
Michael I Love, Wolfgang Huber, Simon Anders. Genome Biol 2014
20

Intratumoral Tcf1+PD-1+CD8+ T Cells with Stem-like Properties Promote Tumor Control in Response to Vaccination and Checkpoint Blockade Immunotherapy.
Imran Siddiqui, Karin Schaeuble, Vijaykumar Chennupati, Silvia A Fuertes Marraco, Sandra Calderon-Copete, Daniela Pais Ferreira, Santiago J Carmona, Leonardo Scarpellino, David Gfeller, Sylvain Pradervand,[...]. Immunity 2019
464
20

Comprehensive Integration of Single-Cell Data.
Tim Stuart, Andrew Butler, Paul Hoffman, Christoph Hafemeister, Efthymia Papalexi, William M Mauck, Yuhan Hao, Marlon Stoeckius, Peter Smibert, Rahul Satija. Cell 2019
15

Single-cell RNA-seq reveals TOX as a key regulator of CD8+ T cell persistence in chronic infection.
Chen Yao, Hong-Wei Sun, Neal E Lacey, Yun Ji, E Ashley Moseman, Han-Yu Shih, Elisabeth F Heuston, Martha Kirby, Stacie Anderson, Jun Cheng,[...]. Nat Immunol 2019
196
15

Suppression of Tcf1 by Inflammatory Cytokines Facilitates Effector CD8 T Cell Differentiation.
Maxime Danilo, Vijaykumar Chennupati, Joana Gomes Silva, Stefanie Siegert, Werner Held. Cell Rep 2018
69
15

Defining Memory CD8 T Cell.
Matthew D Martin, Vladimir P Badovinac. Front Immunol 2018
141
15

The TCF-1 and LEF-1 transcription factors have cooperative and opposing roles in T cell development and malignancy.
Shuyang Yu, Xinyuan Zhou, Farrah C Steinke, Chengyu Liu, Shann-Ching Chen, Oksana Zagorodna, Xuefang Jing, Yoshifumi Yokota, David K Meyerholz, Charles G Mullighan,[...]. Immunity 2012
128
15

Tcf1 and Lef1 are required for the immunosuppressive function of regulatory T cells.
Shaojun Xing, Kexin Gai, Xiang Li, Peng Shao, Zhouhao Zeng, Xudong Zhao, Xin Zhao, Xia Chen, William J Paradee, David K Meyerholz,[...]. J Exp Med 2019
40
15

A Shared Regulatory Element Controls the Initiation of Tcf7 Expression During Early T Cell and Innate Lymphoid Cell Developments.
Christelle Harly, Devin Kenney, Yueqiang Wang, Yi Ding, Yongge Zhao, Parirokh Awasthi, Avinash Bhandoola. Front Immunol 2020
14
21

Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities.
Sven Heinz, Christopher Benner, Nathanael Spann, Eric Bertolino, Yin C Lin, Peter Laslo, Jason X Cheng, Cornelis Murre, Harinder Singh, Christopher K Glass. Mol Cell 2010
15


Model-based analysis of ChIP-Seq (MACS).
Yong Zhang, Tao Liu, Clifford A Meyer, Jérôme Eeckhoute, David S Johnson, Bradley E Bernstein, Chad Nusbaum, Richard M Myers, Myles Brown, Wei Li,[...]. Genome Biol 2008
15

TFH cells depend on Tcf1-intrinsic HDAC activity to suppress CTLA4 and guard B-cell help function.
Fengyin Li, Xin Zhao, Yali Zhang, Peng Shao, Xiaoke Ma, William J Paradee, Chengyu Liu, Jianmin Wang, Hai-Hui Xue. Proc Natl Acad Sci U S A 2021
13
23

Structural basis for DNA bending by the architectural transcription factor LEF-1.
J J Love, X Li, D A Case, K Giese, R Grosschedl, P E Wright. Nature 1995
497
15

TCF-1 and LEF-1 act upstream of Th-POK to promote the CD4(+) T cell fate and interact with Runx3 to silence Cd4 in CD8(+) T cells.
Farrah C Steinke, Shuyang Yu, Xinyuan Zhou, Bing He, Wenjing Yang, Bo Zhou, Hiroshi Kawamoto, Jun Zhu, Kai Tan, Hai-Hui Xue. Nat Immunol 2014
100
15

Cutting edge: The transcription factor eomesodermin enables CD8+ T cells to compete for the memory cell niche.
Arnob Banerjee, Scott M Gordon, Andrew M Intlekofer, Michael A Paley, Erin C Mooney, Tulia Lindsten, E John Wherry, Steven L Reiner. J Immunol 2010
279
15


T Cell Dysfunction in Cancer.
Daniela S Thommen, Ton N Schumacher. Cancer Cell 2018
441
15

T cell factor 1: A master regulator of the T cell response in disease.
Giulia Escobar, Davide Mangani, Ana C Anderson. Sci Immunol 2020
20
15

T-cell factor 1 is a gatekeeper for T-cell specification in response to Notch signaling.
Kristine Germar, Marei Dose, Tassos Konstantinou, Jiangwen Zhang, Hongfang Wang, Camille Lobry, Kelly L Arnett, Stephen C Blacklow, Iannis Aifantis, Jon C Aster,[...]. Proc Natl Acad Sci U S A 2011
137
15

A critical role for TCF-1 in T-lineage specification and differentiation.
Brittany Nicole Weber, Anthony Wei-Shine Chi, Alejandro Chavez, Yumi Yashiro-Ohtani, Qi Yang, Olga Shestova, Avinash Bhandoola. Nature 2011
261
15

Developmental Relationships of Four Exhausted CD8+ T Cell Subsets Reveals Underlying Transcriptional and Epigenetic Landscape Control Mechanisms.
Jean-Christophe Beltra, Sasikanth Manne, Mohamed S Abdel-Hakeem, Makoto Kurachi, Josephine R Giles, Zeyu Chen, Valentina Casella, Shin Foong Ngiow, Omar Khan, Yinghui Jane Huang,[...]. Immunity 2020
188
10

Homeostasis of naive and memory T cells.
Charles D Surh, Jonathan Sprent. Immunity 2008
825
10

TOX reinforces the phenotype and longevity of exhausted T cells in chronic viral infection.
Francesca Alfei, Kristiyan Kanev, Maike Hofmann, Ming Wu, Hazem E Ghoneim, Patrick Roelli, Daniel T Utzschneider, Madlaina von Hoesslin, Jolie G Cullen, Yiping Fan,[...]. Nature 2019
313
10

Defining CD8+ T cells that provide the proliferative burst after PD-1 therapy.
Se Jin Im, Masao Hashimoto, Michael Y Gerner, Junghwa Lee, Haydn T Kissick, Matheus C Burger, Qiang Shan, J Scott Hale, Judong Lee, Tahseen H Nasti,[...]. Nature 2016
830
10

CD8+ T Lymphocyte Self-Renewal during Effector Cell Determination.
Wen-Hsuan W Lin, Simone A Nish, Bonnie Yen, Yen-Hua Chen, William C Adams, Radomir Kratchmarov, Nyanza J Rothman, Avinash Bhandoola, Hai-Hui Xue, Steven L Reiner. Cell Rep 2016
73
10

The TCF1-Bcl6 axis counteracts type I interferon to repress exhaustion and maintain T cell stemness.
Tuoqi Wu, Yun Ji, E Ashley Moseman, Haifeng C Xu, Monica Manglani, Martha Kirby, Stacie M Anderson, Robin Handon, Elizabeth Kenyon, Abdel Elkahloun,[...]. Sci Immunol 2016
232
10

T Cell Factor 1-Expressing Memory-like CD8(+) T Cells Sustain the Immune Response to Chronic Viral Infections.
Daniel T Utzschneider, Mélanie Charmoy, Vijaykumar Chennupati, Laurène Pousse, Daniela Pais Ferreira, Sandra Calderon-Copete, Maxime Danilo, Francesca Alfei, Maike Hofmann, Dominik Wieland,[...]. Immunity 2016
409
10

The transcriptional regulators Id2 and Id3 control the formation of distinct memory CD8+ T cell subsets.
Cliff Y Yang, J Adam Best, Jamie Knell, Edward Yang, Alison D Sheridan, Adam K Jesionek, Haiyan S Li, Richard R Rivera, Kristin Camfield Lind, Louise M D'Cruz,[...]. Nat Immunol 2011
248
10

BATF regulates progenitor to cytolytic effector CD8+ T cell transition during chronic viral infection.
Yao Chen, Ryan A Zander, Xiaopeng Wu, David M Schauder, Moujtaba Y Kasmani, Jian Shen, Shikan Zheng, Robert Burns, Elizabeth J Taparowsky, Weiguo Cui. Nat Immunol 2021
21
10

TOX and TOX2 transcription factors cooperate with NR4A transcription factors to impose CD8+ T cell exhaustion.
Hyungseok Seo, Joyce Chen, Edahí González-Avalos, Daniela Samaniego-Castruita, Arundhoti Das, Yueqiang H Wang, Isaac F López-Moyado, Romain O Georges, Wade Zhang, Atsushi Onodera,[...]. Proc Natl Acad Sci U S A 2019
246
10

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data.
Mark D Robinson, Davis J McCarthy, Gordon K Smyth. Bioinformatics 2010
10

Juicer Provides a One-Click System for Analyzing Loop-Resolution Hi-C Experiments.
Neva C Durand, Muhammad S Shamim, Ido Machol, Suhas S P Rao, Miriam H Huntley, Eric S Lander, Erez Lieberman Aiden. Cell Syst 2016
782
10

CD8 T Cell Exhaustion During Chronic Viral Infection and Cancer.
Laura M McLane, Mohamed S Abdel-Hakeem, E John Wherry. Annu Rev Immunol 2019
542
10

How transcription factors drive choice of the T cell fate.
Hiroyuki Hosokawa, Ellen V Rothenberg. Nat Rev Immunol 2021
48
10

Transformation of Accessible Chromatin and 3D Nucleome Underlies Lineage Commitment of Early T Cells.
Gangqing Hu, Kairong Cui, Difeng Fang, Satoshi Hirose, Xun Wang, Darawalee Wangsa, Wenfei Jin, Thomas Ried, Pentao Liu, Jinfang Zhu,[...]. Immunity 2018
89
10

Epigenetic silencing of CD4 in T cells committed to the cytotoxic lineage.
Y R Zou, M J Sunshine, I Taniuchi, F Hatam, N Killeen, D R Littman. Nat Genet 2001
147
10

TCF-1 and HEB cooperate to establish the epigenetic and transcription profiles of CD4+CD8+ thymocytes.
Akinola Olumide Emmanuel, Stephen Arnovitz, Leila Haghi, Priya S Mathur, Soumi Mondal, Jasmin Quandt, Michael K Okoreeh, Mark Maienschein-Cline, Khashayarsha Khazaie, Marei Dose,[...]. Nat Immunol 2018
33
10

The transcription factor Runx3 guards cytotoxic CD8+ effector T cells against deviation towards follicular helper T cell lineage.
Qiang Shan, Zhouhao Zeng, Shaojun Xing, Fengyin Li, Stacey M Hartwig, Jodi A Gullicksrud, Samarchith P Kurup, Natalija Van Braeckel-Budimir, Yao Su, Matthew D Martin,[...]. Nat Immunol 2017
81
10

The multifaceted role of CD4(+) T cells in CD8(+) T cell memory.
Brian J Laidlaw, Joseph E Craft, Susan M Kaech. Nat Rev Immunol 2016
246
10

Repression of the DNA-binding inhibitor Id3 by Blimp-1 limits the formation of memory CD8+ T cells.
Yun Ji, Zoltan Pos, Mahadev Rao, Christopher A Klebanoff, Zhiya Yu, Madhusudhanan Sukumar, Robert N Reger, Douglas C Palmer, Zachary A Borman, Pawel Muranski,[...]. Nat Immunol 2011
136
10

Central memory self/tumor-reactive CD8+ T cells confer superior antitumor immunity compared with effector memory T cells.
Christopher A Klebanoff, Luca Gattinoni, Parizad Torabi-Parizi, Keith Kerstann, Adela R Cardones, Steven E Finkelstein, Douglas C Palmer, Paul A Antony, Sam T Hwang, Steven A Rosenberg,[...]. Proc Natl Acad Sci U S A 2005
664
10

An interleukin-21-interleukin-10-STAT3 pathway is critical for functional maturation of memory CD8+ T cells.
Weiguo Cui, Ying Liu, Jason S Weinstein, Joseph Craft, Susan M Kaech. Immunity 2011
270
10

Tumor-Specific T Cell Dysfunction Is a Dynamic Antigen-Driven Differentiation Program Initiated Early during Tumorigenesis.
Andrea Schietinger, Mary Philip, Varintra E Krisnawan, Edison Y Chiu, Jeffrey J Delrow, Ryan S Basom, Peter Lauer, Dirk G Brockstedt, Sue E Knoblaugh, Günter J Hämmerling,[...]. Immunity 2016
313
10


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.