A citation-based method for searching scientific literature

Maxime Lalonde, Manuel Trauner, Marcel Werner, Stephan Hamperl. Life (Basel) 2021
Times Cited: 4







List of co-cited articles
52 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Transcription-Replication Conflict Orientation Modulates R-Loop Levels and Activates Distinct DNA Damage Responses.
Stephan Hamperl, Michael J Bocek, Joshua C Saldivar, Tomek Swigut, Karlene A Cimprich. Cell 2017
274
100

R-Loops as Cellular Regulators and Genomic Threats.
Madzia P Crossley, Michael Bocek, Karlene A Cimprich. Mol Cell 2019
287
100

RNA polymerase II contributes to preventing transcription-mediated replication fork stalls.
Irene Felipe-Abrio, Juan Lafuente-Barquero, María L García-Rubio, Andrés Aguilera. EMBO J 2015
31
75

R Loops: From Physiological to Pathological Roles.
Tatiana García-Muse, Andrés Aguilera. Cell 2019
209
75



Combined inhibition of Aurora-A and ATR kinase results in regression of MYCN-amplified neuroblastoma.
Isabelle Roeschert, Evon Poon, Anton G Henssen, Heathcliff Dorado Garcia, Marco Gatti, Celeste Giansanti, Yann Jamin, Carsten P Ade, Peter Gallant, Christina Schülein-Völk,[...]. Nat Cancer 2021
17
50

Chromatin modifiers Mdm2 and RNF2 prevent RNA:DNA hybrids that impair DNA replication.
Ina Klusmann, Kai Wohlberedt, Anna Magerhans, Federico Teloni, Jan O Korbel, Matthias Altmeyer, Matthias Dobbelstein. Proc Natl Acad Sci U S A 2018
33
50

Topoisomerase I suppresses genomic instability by preventing interference between replication and transcription.
Sandie Tuduri, Laure Crabbé, Chiara Conti, Hélène Tourrière, Heidi Holtgreve-Grez, Anna Jauch, Véronique Pantesco, John De Vos, Aubin Thomas, Charles Theillet,[...]. Nat Cell Biol 2009
347
50

Transcription-coupled nucleotide excision repair factors promote R-loop-induced genome instability.
Julie Sollier, Caroline Townsend Stork, María L García-Rubio, Renee D Paulsen, Andrés Aguilera, Karlene A Cimprich. Mol Cell 2014
325
50


Transcription-replication conflicts: how they occur and how they are resolved.
Tatiana García-Muse, Andrés Aguilera. Nat Rev Mol Cell Biol 2016
204
50

R-loops associated with triplet repeat expansions promote gene silencing in Friedreich ataxia and fragile X syndrome.
Matthias Groh, Michele M P Lufino, Richard Wade-Martins, Natalia Gromak. PLoS Genet 2014
218
50

Mec1, INO80, and the PAF1 complex cooperate to limit transcription replication conflicts through RNAPII removal during replication stress.
Jérôme Poli, Christian-Benedikt Gerhold, Alessandro Tosi, Nicole Hustedt, Andrew Seeber, Ragna Sack, Franz Herzog, Philippe Pasero, Kenji Shimada, Karl-Peter Hopfner,[...]. Genes Dev 2016
72
50

Resolution of R-loops by INO80 promotes DNA replication and maintains cancer cell proliferation and viability.
Lisa Prendergast, Urszula L McClurg, Rossitsa Hristova, Rolando Berlinguer-Palmini, Sarah Greener, Katie Veitch, Inmaculada Hernandez, Philippe Pasero, Daniel Rico, Jonathan M G Higgins,[...]. Nat Commun 2020
23
50

ARID1A regulates R-loop associated DNA replication stress.
Shuhe Tsai, Louis-Alexandre Fournier, Emily Yun-Chia Chang, James P Wells, Sean W Minaker, Yi Dan Zhu, Alan Ying-Hsu Wang, Yemin Wang, David G Huntsman, Peter C Stirling. PLoS Genet 2021
21
50

Senataxin Mutation Reveals How R-Loops Promote Transcription by Blocking DNA Methylation at Gene Promoters.
Christopher Grunseich, Isabel X Wang, Jason A Watts, Joshua T Burdick, Robert D Guber, Zhengwei Zhu, Alan Bruzel, Tyler Lanman, Kelian Chen, Alice B Schindler,[...]. Mol Cell 2018
89
50

Transcription-mediated replication hindrance: a major driver of genome instability.
Belén Gómez-González, Andrés Aguilera. Genes Dev 2019
108
50

BRCA2 prevents R-loop accumulation and associates with TREX-2 mRNA export factor PCID2.
Vaibhav Bhatia, Sonia I Barroso, María L García-Rubio, Emanuela Tumini, Emilia Herrera-Moyano, Andrés Aguilera. Nature 2014
323
50

Replication-Transcription Conflicts Generate R-Loops that Orchestrate Bacterial Stress Survival and Pathogenesis.
Kevin S Lang, Ashley N Hall, Christopher N Merrikh, Mark Ragheb, Hannah Tabakh, Alex J Pollock, Joshua J Woodward, Julia E Dreifus, Houra Merrikh. Cell 2017
123
50

The chromatin remodelling factor ATRX suppresses R-loops in transcribed telomeric repeats.
Diu Tt Nguyen, Hsiao Phin J Voon, Barbara Xella, Caroline Scott, David Clynes, Christian Babbs, Helena Ayyub, Jon Kerry, Jacqueline A Sharpe, Jackie A Sloane-Stanley,[...]. EMBO Rep 2017
69
50

The Fanconi Anemia Pathway Protects Genome Integrity from R-loops.
María L García-Rubio, Carmen Pérez-Calero, Sonia I Barroso, Emanuela Tumini, Emilia Herrera-Moyano, Iván V Rosado, Andrés Aguilera. PLoS Genet 2015
179
50

PBRM1 Deficiency Confers Synthetic Lethality to DNA Repair Inhibitors in Cancer.
Roman M Chabanon, Daphné Morel, Thomas Eychenne, Léo Colmet-Daage, Ilirjana Bajrami, Nicolas Dorvault, Marlène Garrido, Cornelia Meisenberg, Andrew Lamb, Carine Ngo,[...]. Cancer Res 2021
31
50

The SWI/SNF chromatin remodeling complex helps resolve R-loop-mediated transcription-replication conflicts.
Aleix Bayona-Feliu, Sonia Barroso, Sergio Muñoz, Andrés Aguilera. Nat Genet 2021
31
50


RECQ5 helicase promotes resolution of conflicts between replication and transcription in human cells.
Vaclav Urban, Jana Dobrovolna, Daniela Hühn, Jana Fryzelkova, Jiri Bartek, Pavel Janscak. J Cell Biol 2016
41
50

ADAR1 RNA editing enzyme regulates R-loop formation and genome stability at telomeres in cancer cells.
Yusuke Shiromoto, Masayuki Sakurai, Moeko Minakuchi, Kentaro Ariyoshi, Kazuko Nishikura. Nat Commun 2021
19
50

XRN2 Links Transcription Termination to DNA Damage and Replication Stress.
Julio C Morales, Patricia Richard, Praveen L Patidar, Edward A Motea, Tuyen T Dang, James L Manley, David A Boothman. PLoS Genet 2016
60
50

The Fanconi Anemia Pathway Maintains Genome Stability by Coordinating Replication and Transcription.
Rebekka A Schwab, Jadwiga Nieminuszczy, Fenil Shah, Jamie Langton, David Lopez Martinez, Chih-Chao Liang, Martin A Cohn, Richard J Gibbons, Andrew J Deans, Wojciech Niedzwiedz. Mol Cell 2015
212
50

H3K4 methylation at active genes mitigates transcription-replication conflicts during replication stress.
Shin Yen Chong, Sam Cutler, Jing-Jer Lin, Cheng-Hung Tsai, Huai-Kuang Tsai, Sue Biggins, Toshio Tsukiyama, Yi-Chen Lo, Cheng-Fu Kao. Nat Commun 2020
23
50

Histone Mutants Separate R Loop Formation from Genome Instability Induction.
Desiré García-Pichardo, Juan C Cañas, María L García-Rubio, Belén Gómez-González, Ana G Rondón, Andrés Aguilera. Mol Cell 2017
70
50

TonEBP recognizes R-loops and initiates m6A RNA methylation for R-loop resolution.
Hyun Je Kang, Na Young Cheon, Hyun Park, Gyu Won Jeong, Byeong Jin Ye, Eun Jin Yoo, Jun Ho Lee, Jin-Hoe Hur, Eun-A Lee, Hongtae Kim,[...]. Nucleic Acids Res 2021
20
50

BRCA1 recruitment to transcriptional pause sites is required for R-loop-driven DNA damage repair.
Elodie Hatchi, Konstantina Skourti-Stathaki, Steffen Ventz, Luca Pinello, Angela Yen, Kinga Kamieniarz-Gdula, Stoil Dimitrov, Shailja Pathania, Kristine M McKinney, Matthew L Eaton,[...]. Mol Cell 2015
249
50

m5C modification of mRNA serves a DNA damage code to promote homologous recombination.
Hao Chen, Haibo Yang, Xiaolan Zhu, Tribhuwan Yadav, Jian Ouyang, Samuel S Truesdell, Jun Tan, Yumin Wang, Meihan Duan, Leizhen Wei,[...]. Nat Commun 2020
49
50

Prevalent, Dynamic, and Conserved R-Loop Structures Associate with Specific Epigenomic Signatures in Mammals.
Lionel A Sanz, Stella R Hartono, Yoong Wearn Lim, Sandra Steyaert, Aparna Rajpurkar, Paul A Ginno, Xiaoqin Xu, Frédéric Chédin. Mol Cell 2016
279
50

Human THO-Sin3A interaction reveals new mechanisms to prevent R-loops that cause genome instability.
Irene Salas-Armenteros, Carmen Pérez-Calero, Aleix Bayona-Feliu, Emanuela Tumini, Rosa Luna, Andrés Aguilera. EMBO J 2017
66
50

METTL3 and N6-Methyladenosine Promote Homologous Recombination-Mediated Repair of DSBs by Modulating DNA-RNA Hybrid Accumulation.
Canfeng Zhang, Liping Chen, Di Peng, Ao Jiang, Yunru He, Yanru Zeng, Chen Xie, Haoxian Zhou, Xiaotong Luo, Haiying Liu,[...]. Mol Cell 2020
92
50

R loops are linked to histone H3 S10 phosphorylation and chromatin condensation.
Maikel Castellano-Pozo, José M Santos-Pereira, Ana G Rondón, Sonia Barroso, Eloisa Andújar, Mónica Pérez-Alegre, Tatiana García-Muse, Andrés Aguilera. Mol Cell 2013
177
50

BRD4 Prevents R-Loop Formation and Transcription-Replication Conflicts by Ensuring Efficient Transcription Elongation.
Drake S Edwards, Rohin Maganti, Jarred P Tanksley, Jie Luo, James J H Park, Elena Balkanska-Sinclair, Jinjie Ling, Scott R Floyd. Cell Rep 2020
26
50

SIRT7 and the DEAD-box helicase DDX21 cooperate to resolve genomic R loops and safeguard genome stability.
Chenlin Song, Agnes Hotz-Wagenblatt, Renate Voit, Ingrid Grummt. Genes Dev 2017
100
50

N6-methyladenosine regulates the stability of RNA:DNA hybrids in human cells.
Abdulkadir Abakir, Tom C Giles, Agnese Cristini, Jeremy M Foster, Nan Dai, Marta Starczak, Alejandro Rubio-Roldan, Miaomiao Li, Maria Eleftheriou, James Crutchley,[...]. Nat Genet 2020
91
50

Causes and consequences of RNA polymerase II stalling during transcript elongation.
Melvin Noe Gonzalez, Daniel Blears, Jesper Q Svejstrup. Nat Rev Mol Cell Biol 2021
48
50

RECQL5 controls transcript elongation and suppresses genome instability associated with transcription stress.
Marco Saponaro, Theodoros Kantidakis, Richard Mitter, Gavin P Kelly, Mark Heron, Hannah Williams, Johannes Söding, Aengus Stewart, Jesper Q Svejstrup. Cell 2014
119
50

Harmful R-loops are prevented via different cell cycle-specific mechanisms.
Marta San Martin-Alonso, María E Soler-Oliva, María García-Rubio, Tatiana García-Muse, Andrés Aguilera. Nat Commun 2021
7
50

Replisome bypass of a protein-based R-loop block by Pif1.
Grant D Schauer, Lisanne M Spenkelink, Jacob S Lewis, Olga Yurieva, Stefan H Mueller, Antoine M van Oijen, Michael E O'Donnell. Proc Natl Acad Sci U S A 2020
19
50

Toxic R-loops: Cause or consequence of replication stress?
Samira Kemiha, Jérôme Poli, Yea-Lih Lin, Armelle Lengronne, Philippe Pasero. DNA Repair (Amst) 2021
4
50


Senataxin associates with replication forks to protect fork integrity across RNA-polymerase-II-transcribed genes.
Amaya Alzu, Rodrigo Bermejo, Martina Begnis, Chiara Lucca, Daniele Piccini, Walter Carotenuto, Marco Saponaro, Alessandra Brambati, Andrea Cocito, Marco Foiani,[...]. Cell 2012
161
50

Increased global transcription activity as a mechanism of replication stress in cancer.
Panagiotis Kotsantis, Lara Marques Silva, Sarah Irmscher, Rebecca M Jones, Lisa Folkes, Natalia Gromak, Eva Petermann. Nat Commun 2016
162
50

Transcription shapes DNA replication initiation and termination in human cells.
Yu-Hung Chen, Sarah Keegan, Malik Kahli, Peter Tonzi, David Fenyö, Tony T Huang, Duncan J Smith. Nat Struct Mol Biol 2019
63
50


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.