A citation-based method for searching scientific literature

Martin Philpott, Jonathan Watson, Anjan Thakurta, Tom Brown, Tom Brown, Udo Oppermann, Adam P Cribbs. Nat Biotechnol 2021
Times Cited: 1







List of co-cited articles
articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Genome of the Komodo dragon reveals adaptations in the cardiovascular and chemosensory systems of monitor lizards.
Abigail L Lind, Yvonne Y Y Lai, Yulia Mostovoy, Alisha K Holloway, Alessio Iannucci, Angel C Y Mak, Marco Fondi, Valerio Orlandini, Walter L Eckalbar, Massimo Milan,[...]. Nat Ecol Evol 2019
34
100

TRiCoLOR: tandem repeat profiling using whole-genome long-read sequencing data.
Davide Bolognini, Alberto Magi, Vladimir Benes, Jan O Korbel, Tobias Rausch. Gigascience 2020
6
100

NanoReviser: An Error-Correction Tool for Nanopore Sequencing Based on a Deep Learning Algorithm.
Luotong Wang, Li Qu, Longshu Yang, Yiying Wang, Huaiqiu Zhu. Front Genet 2020
9
100

The Oxford Nanopore MinION: delivery of nanopore sequencing to the genomics community.
Miten Jain, Hugh E Olsen, Benedict Paten, Mark Akeson. Genome Biol 2016
426
100

Phased diploid genome assembly with single-molecule real-time sequencing.
Chen-Shan Chin, Paul Peluso, Fritz J Sedlazeck, Maria Nattestad, Gregory T Concepcion, Alicia Clum, Christopher Dunn, Ronan O'Malley, Rosa Figueroa-Balderas, Abraham Morales-Cruz,[...]. Nat Methods 2016
706
100

Accurate spliced alignment of long RNA sequencing reads.
Kristoffer Sahlin, Veli Mäkinen. Bioinformatics 2021
2
100

De Novo Genome Assembly of the Meadow Brown Butterfly, Maniola jurtina.
Kumar Saurabh Singh, David J Hosken, Nina Wedell, Richard Ffrench-Constant, Chris Bass, Simon Baxter, Konrad Paszkiewicz, Manmohan D Sharma. G3 (Bethesda) 2020
1
100

Identification of pathogens in culture-negative infective endocarditis cases by metagenomic analysis.
Jun Cheng, Huan Hu, Yue Kang, Weizhi Chen, Wei Fang, Kaijuan Wang, Qian Zhang, Aisi Fu, Shuilian Zhou, Chen Cheng,[...]. Ann Clin Microbiol Antimicrob 2018
23
100

proovread: large-scale high-accuracy PacBio correction through iterative short read consensus.
Thomas Hackl, Rainer Hedrich, Jörg Schultz, Frank Förster. Bioinformatics 2014
250
100

Poretools: a toolkit for analyzing nanopore sequence data.
Nicholas J Loman, Aaron R Quinlan. Bioinformatics 2014
232
100

Automated forward and reverse ratcheting of DNA in a nanopore at 5-Å precision.
Gerald M Cherf, Kate R Lieberman, Hytham Rashid, Christopher E Lam, Kevin Karplus, Mark Akeson. Nat Biotechnol 2012
351
100

Accurate self-correction of errors in long reads using de Bruijn graphs.
Leena Salmela, Riku Walve, Eric Rivals, Esko Ukkonen. Bioinformatics 2017
41
100

Rapid diagnosis of bacterial meningitis by nanopore 16S amplicon sequencing: A pilot study.
Jangsup Moon, Narae Kim, Tae-Joon Kim, Jin-Sun Jun, Han Sang Lee, Hye-Rim Shin, Soon-Tae Lee, Keun-Hwa Jung, Kyung-Il Park, Ki-Young Jung,[...]. Int J Med Microbiol 2019
13
100

Robust long-read native DNA sequencing using the ONT CsgG Nanopore system.
Jean-Michel Carter, Shobbir Hussain. Wellcome Open Res 2017
19
100

Telomere-to-telomere assembly of a complete human X chromosome.
Karen H Miga, Sergey Koren, Arang Rhie, Mitchell R Vollger, Ariel Gershman, Andrey Bzikadze, Shelise Brooks, Edmund Howe, David Porubsky, Glennis A Logsdon,[...]. Nature 2020
166
100

Canu: scalable and accurate long-read assembly via adaptive k-mer weighting and repeat separation.
Sergey Koren, Brian P Walenz, Konstantin Berlin, Jason R Miller, Nicholas H Bergman, Adam M Phillippy. Genome Res 2017
100

Single-molecule DNA detection with an engineered MspA protein nanopore.
Tom Z Butler, Mikhail Pavlenok, Ian M Derrington, Michael Niederweis, Jens H Gundlach. Proc Natl Acad Sci U S A 2008
241
100


Radiation Tolerance of Nanopore Sequencing Technology for Life Detection on Mars and Europa.
Mark A Sutton, Aaron S Burton, Elena Zaikova, Ryan E Sutton, William B Brinckerhoff, Julie G Bevilacqua, Margaret M Weng, Michael J Mumma, Sarah Stewart Johnson. Sci Rep 2019
7
100

Rapid draft sequencing and real-time nanopore sequencing in a hospital outbreak of Salmonella.
Joshua Quick, Philip Ashton, Szymon Calus, Carole Chatt, Savita Gossain, Jeremy Hawker, Satheesh Nair, Keith Neal, Kathy Nye, Tansy Peters,[...]. Genome Biol 2015
162
100

The evolution of nanopore sequencing.
Yue Wang, Qiuping Yang, Zhimin Wang. Front Genet 2015
52
100

Hybrid error correction and de novo assembly of single-molecule sequencing reads.
Sergey Koren, Michael C Schatz, Brian P Walenz, Jeffrey Martin, Jason T Howard, Ganeshkumar Ganapathy, Zhong Wang, David A Rasko, W Richard McCombie, Erich D Jarvis,[...]. Nat Biotechnol 2012
591
100


Severe hemophilia A caused by an unbalanced chromosomal rearrangement identified using nanopore sequencing.
Nicolas Chatron, Caroline Schluth-Bolard, Mathilde Frétigny, Audrey Labalme, Gaëlle Vilchez, Sabine-Marie Castet, Claude Négrier, Damien Sanlaville, Christine Vinciguerra, Yohann Jourdy. J Thromb Haemost 2019
6
100

A complete bacterial genome assembled de novo using only nanopore sequencing data.
Nicholas J Loman, Joshua Quick, Jared T Simpson. Nat Methods 2015
535
100

Direct RNA sequencing reveals m6A modifications on adenovirus RNA are necessary for efficient splicing.
Alexander M Price, Katharina E Hayer, Alexa B R McIntyre, Nandan S Gokhale, Jonathan S Abebe, Ashley N Della Fera, Christopher E Mason, Stacy M Horner, Angus C Wilson, Daniel P Depledge,[...]. Nat Commun 2020
31
100

Resolving MiSeq-Generated Ambiguities in HLA-DPB1 Typing by Using the Oxford Nanopore Technology.
Jamie L Duke, Timothy L Mosbruger, Deborah Ferriola, Nilesh Chitnis, Taishan Hu, Nikolaos Tairis, David J Margolis, Dimitri S Monos. J Mol Diagn 2019
10
100


Nanopore Sequencing Significantly Improves Genome Assembly of the Protozoan Parasite Trypanosoma cruzi.
Florencia Díaz-Viraqué, Sebastián Pita, Gonzalo Greif, Rita de Cássia Moreira de Souza, Gregorio Iraola, Carlos Robello. Genome Biol Evol 2019
21
100

A single-molecule nanopore device detects DNA polymerase activity with single-nucleotide resolution.
Scott L Cockroft, John Chu, Manuel Amorin, M Reza Ghadiri. J Am Chem Soc 2008
139
100

Breakpoint mapping of a novel de novo translocation t(X;20)(q11.1;p13) by positional cloning and long read sequencing.
Usha R Dutta, Sudha N Rao, Vijaya Kumar Pidugu, Vineeth V S, Amrita Bhattacherjee, Aneek Das Bhowmik, Sathish K Ramaswamy, Kumar Gautam Singh, Ashwin Dalal. Genomics 2019
13
100

Nanopore long-read RNAseq reveals widespread transcriptional variation among the surface receptors of individual B cells.
Ashley Byrne, Anna E Beaudin, Hugh E Olsen, Miten Jain, Charles Cole, Theron Palmer, Rebecca M DuBois, E Camilla Forsberg, Mark Akeson, Christopher Vollmers. Nat Commun 2017
158
100


Splicing Kinetics and Coordination Revealed by Direct Nascent RNA Sequencing through Nanopores.
Heather L Drexler, Karine Choquet, L Stirling Churchman. Mol Cell 2020
44
100

High throughput error corrected Nanopore single cell transcriptome sequencing.
Kevin Lebrigand, Virginie Magnone, Pascal Barbry, Rainer Waldmann. Nat Commun 2020
26
100

Benchmarking of the Oxford Nanopore MinION sequencing for quantitative and qualitative assessment of cDNA populations.
Spyros Oikonomopoulos, Yu Chang Wang, Haig Djambazian, Dunarel Badescu, Jiannis Ragoussis. Sci Rep 2016
69
100

Picky comprehensively detects high-resolution structural variants in nanopore long reads.
Liang Gong, Chee-Hong Wong, Wei-Chung Cheng, Harianto Tjong, Francesca Menghi, Chew Yee Ngan, Edison T Liu, Chia-Lin Wei. Nat Methods 2018
34
100

STAR: ultrafast universal RNA-seq aligner.
Alexander Dobin, Carrie A Davis, Felix Schlesinger, Jorg Drenkow, Chris Zaleski, Sonali Jha, Philippe Batut, Mark Chaisson, Thomas R Gingeras. Bioinformatics 2013
100

Processive replication of single DNA molecules in a nanopore catalyzed by phi29 DNA polymerase.
Kate R Lieberman, Gerald M Cherf, Michael J Doody, Felix Olasagasti, Yvette Kolodji, Mark Akeson. J Am Chem Soc 2010
131
100

Targeted nanopore sequencing with Cas9-guided adapter ligation.
Timothy Gilpatrick, Isac Lee, James E Graham, Etienne Raimondeau, Rebecca Bowen, Andrew Heron, Bradley Downs, Saraswati Sukumar, Fritz J Sedlazeck, Winston Timp. Nat Biotechnol 2020
71
100

Finding Nemo: hybrid assembly with Oxford Nanopore and Illumina reads greatly improves the clownfish (Amphiprion ocellaris) genome assembly.
Mun Hua Tan, Christopher M Austin, Michael P Hammer, Yin Peng Lee, Laurence J Croft, Han Ming Gan. Gigascience 2018
42
100


Direct RNA Sequencing of the Coding Complete Influenza A Virus Genome.
Matthew W Keller, Benjamin L Rambo-Martin, Malania M Wilson, Callie A Ridenour, Samuel S Shepard, Thomas J Stark, Elizabeth B Neuhaus, Vivien G Dugan, David E Wentworth, John R Barnes. Sci Rep 2018
48
100

High-accuracy long-read amplicon sequences using unique molecular identifiers with Nanopore or PacBio sequencing.
Søren M Karst, Ryan M Ziels, Rasmus H Kirkegaard, Emil A Sørensen, Daniel McDonald, Qiyun Zhu, Rob Knight, Mads Albertsen. Nat Methods 2021
37
100

Long-read sequencing identified intronic repeat expansions in SAMD12 from Chinese pedigrees affected with familial cortical myoclonic tremor with epilepsy.
Sheng Zeng, Mei-Yun Zhang, Xue-Jing Wang, Zheng-Mao Hu, Jin-Chen Li, Nan Li, Jun-Ling Wang, Fan Liang, Qi Yang, Qian Liu,[...]. J Med Genet 2019
43
100

Cloning of the mspA gene encoding a porin from Mycobacterium smegmatis.
M Niederweis, S Ehrt, C Heinz, U Klöcker, S Karosi, K M Swiderek, L W Riley, R Benz. Mol Microbiol 1999
106
100

Structural variants identified by Oxford Nanopore PromethION sequencing of the human genome.
Wouter De Coster, Peter De Rijk, Arne De Roeck, Tim De Pooter, Svenn D'Hert, Mojca Strazisar, Kristel Sleegers, Christine Van Broeckhoven. Genome Res 2019
55
100

Comprehensive comparison of Pacific Biosciences and Oxford Nanopore Technologies and their applications to transcriptome analysis.
Jason L Weirather, Mariateresa de Cesare, Yunhao Wang, Paolo Piazza, Vittorio Sebastiano, Xiu-Jie Wang, David Buck, Kin Fai Au. F1000Res 2017
160
100

LoRDEC: accurate and efficient long read error correction.
Leena Salmela, Eric Rivals. Bioinformatics 2014
267
100

HINGE: long-read assembly achieves optimal repeat resolution.
Govinda M Kamath, Ilan Shomorony, Fei Xia, Thomas A Courtade, David N Tse. Genome Res 2017
40
100


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.