A citation-based method for searching scientific literature

Danny E Miller, Arvis Sulovari, Tianyun Wang, Hailey Loucks, Kendra Hoekzema, Katherine M Munson, Alexandra P Lewis, Edith P Almanza Fuerte, Catherine R Paschal, Tom Walsh, Jenny Thies, James T Bennett, Ian Glass, Katrina M Dipple, Karynne Patterson, Emily S Bonkowski, Zoe Nelson, Audrey Squire, Megan Sikes, Erika Beckman, Robin L Bennett, Dawn Earl, Winston Lee, Rando Allikmets, Seth J Perlman, Penny Chow, Anne V Hing, Tara L Wenger, Margaret P Adam, Angela Sun, Christina Lam, Irene Chang, Xue Zou, Stephanie L Austin, Erin Huggins, Alexias Safi, Apoorva K Iyengar, Timothy E Reddy, William H Majoros, Andrew S Allen, Gregory E Crawford, Priya S Kishnani, Mary-Claire King, Tim Cherry, Jessica X Chong, Michael J Bamshad, Deborah A Nickerson, Heather C Mefford, Dan Doherty, Evan E Eichler. Am J Hum Genet 2021
Times Cited: 2







List of co-cited articles
articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Centromere reference models for human chromosomes X and Y satellite arrays.
Karen H Miga, Yulia Newton, Miten Jain, Nicolas Altemose, Huntington F Willard, W James Kent. Genome Res 2014
126
50

Neocentromeres: new insights into centromere structure, disease development, and karyotype evolution.
Owen J Marshall, Anderly C Chueh, Lee H Wong, K H Andy Choo. Am J Hum Genet 2008
265
50

The molecular basis for centromere identity and function.
Kara L McKinley, Iain M Cheeseman. Nat Rev Mol Cell Biol 2016
253
50

Neocentromeres in 15q24-26 map to duplicons which flanked an ancestral centromere in 15q25.
Mario Ventura, Jonathan M Mudge, Valeria Palumbo, Sally Burn, Elisabeth Blennow, Mauro Pierluigi, Roberto Giorda, Orsetta Zuffardi, Nicoletta Archidiacono, Michael S Jackson,[...]. Genome Res 2003
95
50

Genomic and functional variation of human centromeres.
Lori L Sullivan, Beth A Sullivan. Exp Cell Res 2020
11
50

Haplotype-resolved de novo assembly using phased assembly graphs with hifiasm.
Haoyu Cheng, Gregory T Concepcion, Xiaowen Feng, Haowen Zhang, Heng Li. Nat Methods 2021
50
50

Detecting DNA cytosine methylation using nanopore sequencing.
Jared T Simpson, Rachael E Workman, P C Zuzarte, Matei David, L J Dursi, Winston Timp. Nat Methods 2017
305
50

New insights into centromere organization and evolution from the white-cheeked gibbon and marmoset.
A Cellamare, C R Catacchio, C Alkan, G Giannuzzi, F Antonacci, M F Cardone, G Della Valle, M Malig, M Rocchi, E E Eichler,[...]. Mol Biol Evol 2009
35
50

Spatial preservation of nuclear chromatin architecture during three-dimensional fluorescence in situ hybridization (3D-FISH).
Irina Solovei, Antonio Cavallo, Lothar Schermelleh, Françoise Jaunin, Catia Scasselati, Dusan Cmarko, Christoph Cremer, Stanislav Fakan, Thomas Cremer. Exp Cell Res 2002
186
50

Evolutionary and clinical neocentromeres: two faces of the same coin?
Oronzo Capozzi, Stefania Purgato, Ludovica Verdun di Cantogno, Enrico Grosso, Roberto Ciccone, Orsetta Zuffardi, Giuliano Della Valle, Mariano Rocchi. Chromosoma 2008
15
50


Genomic and genetic definition of a functional human centromere.
M G Schueler, A W Higgins, M K Rudd, K Gustashaw, H F Willard. Science 2001
340
50


Alpha satellite DNA biology: finding function in the recesses of the genome.
Shannon M McNulty, Beth A Sullivan. Chromosome Res 2018
46
50

Centromere repositioning.
G Montefalcone, S Tempesta, M Rocchi, N Archidiacono. Genome Res 1999
106
50

False-positive prenatal diagnosis of trisomy 18 by interphase FISH: hybridization of chromosome 18 alpha-satellite DNA probe (D18Z1) to the heterochromatic region of chromosome 9.
Sainan Wei, Victoria Mok Siu, Amy Decker, Mary-Helen Quigg, Jacquelyn Roberson, Jie Xu, Adewale Adeyinka. Prenat Diagn 2007
5
50

Telomere-to-telomere assembly of a complete human X chromosome.
Karen H Miga, Sergey Koren, Arang Rhie, Mitchell R Vollger, Ariel Gershman, Andrey Bzikadze, Shelise Brooks, Edmund Howe, David Porubsky, Glennis A Logsdon,[...]. Nature 2020
166
50

Hybridization of chromosome 18 alpha-satellite DNA probe to chromosome 22.
M Thangavelu, P X Chen, E Pergament. Prenat Diagn 1998
16
50

Independent centromere formation in a capricious, gene-free domain of chromosome 13q21 in Old World monkeys and pigs.
Maria Francesca Cardone, Alicia Alonso, Michele Pazienza, Mario Ventura, Gabriella Montemurro, Lucia Carbone, Pieter J de Jong, Roscoe Stanyon, Pietro D'Addabbo, Nicoletta Archidiacono,[...]. Genome Biol 2006
47
50

Hybridization of the 18 alpha-satellite probe to chromosome 1 revealed in PGD.
Petra Musilova, Roman Rybar, Eva Oracova, Katerina Veselá, Jiri Rubes. Reprod Biomed Online 2008
3
50



Real-time selective sequencing using nanopore technology.
Matthew Loose, Sunir Malla, Michael Stout. Nat Methods 2016
91
50

Accurate detection of complex structural variations using single-molecule sequencing.
Fritz J Sedlazeck, Philipp Rescheneder, Moritz Smolka, Han Fang, Maria Nattestad, Arndt von Haeseler, Michael C Schatz. Nat Methods 2018
390
50

Evolutionary descent of a human chromosome 6 neocentromere: a jump back to 17 million years ago.
Oronzo Capozzi, Stefania Purgato, Pietro D'Addabbo, Nicoletta Archidiacono, Paola Battaglia, Anna Baroncini, Antonella Capucci, Roscoe Stanyon, Giuliano Della Valle, Mariano Rocchi. Genome Res 2009
22
50

Using ERDS to infer copy-number variants in high-coverage genomes.
Mingfu Zhu, Anna C Need, Yujun Han, Dongliang Ge, Jessica M Maia, Qianqian Zhu, Erin L Heinzen, Elizabeth T Cirulli, Kimberly Pelak, Min He,[...]. Am J Hum Genet 2012
71
50

Birth, evolution, and transmission of satellite-free mammalian centromeric domains.
Solomon G Nergadze, Francesca M Piras, Riccardo Gamba, Marco Corbo, Federico Cerutti, Joseph G W McCarter, Eleonora Cappelletti, Francesco Gozzo, Rebecca M Harman, Douglas F Antczak,[...]. Genome Res 2018
28
50

Basic local alignment search tool.
S F Altschul, W Gish, W Miller, E W Myers, D J Lipman. J Mol Biol 1990
50

BreakDancer: an algorithm for high-resolution mapping of genomic structural variation.
Ken Chen, John W Wallis, Michael D McLellan, David E Larson, Joelle M Kalicki, Craig S Pohl, Sean D McGrath, Michael C Wendl, Qunyuan Zhang, Devin P Locke,[...]. Nat Methods 2009
892
50

Mammalian artificial chromosome formation from circular alphoid input DNA does not require telomere repeats.
T A Ebersole, A Ross, E Clark, N McGill, D Schindelhauer, H Cooke, B Grimes. Hum Mol Genet 2000
116
50

Hominoid fission of chromosome 14/15 and the role of segmental duplications.
Giuliana Giannuzzi, Michele Pazienza, John Huddleston, Francesca Antonacci, Maika Malig, Laura Vives, Evan E Eichler, Mario Ventura. Genome Res 2013
9
50

Purification of the centromere-specific protein CENP-A and demonstration that it is a distinctive histone.
D K Palmer, K O'Day, H L Trong, H Charbonneau, R L Margolis. Proc Natl Acad Sci U S A 1991
308
50



Analysis of the centromeric regions of the human genome assembly.
M Katharine Rudd, Huntington F Willard. Trends Genet 2004
118
50


An integrated map of structural variation in 2,504 human genomes.
Peter H Sudmant, Tobias Rausch, Eugene J Gardner, Robert E Handsaker, Alexej Abyzov, John Huddleston, Yan Zhang, Kai Ye, Goo Jun, Markus Hsi-Yang Fritz,[...]. Nature 2015
999
50




Origin of human chromosome 2: an ancestral telomere-telomere fusion.
J W IJdo, A Baldini, D C Ward, S T Reeders, R A Wells. Proc Natl Acad Sci U S A 1991
253
50

The UCSC Genome Browser database: 2015 update.
Kate R Rosenbloom, Joel Armstrong, Galt P Barber, Jonathan Casper, Hiram Clawson, Mark Diekhans, Timothy R Dreszer, Pauline A Fujita, Luvina Guruvadoo, Maximilian Haeussler,[...]. Nucleic Acids Res 2015
628
50


Evolutionary History of Alpha Satellite DNA Repeats Dispersed within Human Genome Euchromatin.
Isidoro Feliciello, Željka Pezer, Dušan Kordiš, Branka Bruvo Mađarić, Đurđica Ugarković. Genome Biol Evol 2020
5
50

Centromere Destiny in Dicentric Chromosomes: New Insights from the Evolution of Human Chromosome 2 Ancestral Centromeric Region.
Giorgia Chiatante, Giuliana Giannuzzi, Francesco Maria Calabrese, Evan E Eichler, Mario Ventura. Mol Biol Evol 2017
6
50


HiCanu: accurate assembly of segmental duplications, satellites, and allelic variants from high-fidelity long reads.
Sergey Nurk, Brian P Walenz, Arang Rhie, Mitchell R Vollger, Glennis A Logsdon, Robert Grothe, Karen H Miga, Evan E Eichler, Adam M Phillippy, Sergey Koren. Genome Res 2020
61
50

Initial sequencing and analysis of the human genome.
E S Lander, L M Linton, B Birren, C Nusbaum, M C Zody, J Baldwin, K Devon, K Dewar, M Doyle, W FitzHugh,[...]. Nature 2001
50

Uncoupling of satellite DNA and centromeric function in the genus Equus.
Francesca M Piras, Solomon G Nergadze, Elisa Magnani, Livia Bertoni, Carmen Attolini, Lela Khoriauli, Elena Raimondi, Elena Giulotto. PLoS Genet 2010
69
50

Readfish enables targeted nanopore sequencing of gigabase-sized genomes.
Alexander Payne, Nadine Holmes, Thomas Clarke, Rory Munro, Bisrat J Debebe, Matthew Loose. Nat Biotechnol 2021
23
50


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.