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Spatial Organization of Chromatin: Emergence of Chromatin Structure During Development.
Rajarshi P Ghosh, Barbara J Meyer. Annu Rev Cell Dev Biol 2021
Times Cited: 9






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List of co-cited articles
93 articles co-cited >1



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  Times     Co-cited
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Organization of Chromosomal DNA by SMC Complexes.
Stanislau Yatskevich, James Rhodes, Kim Nasmyth. Annu Rev Genet 2019
95
3
33

Spatial partitioning of the regulatory landscape of the X-inactivation centre.
Elphège P Nora, Bryan R Lajoie, Edda G Schulz, Luca Giorgetti, Ikuhiro Okamoto, Nicolas Servant, Tristan Piolot, Nynke L van Berkum, Johannes Meisig, John Sedat,[...]. Nature 2012
1648
3
33

Condensin-driven remodelling of X chromosome topology during dosage compensation.
Emily Crane, Qian Bian, Rachel Patton McCord, Bryan R Lajoie, Bayly S Wheeler, Edward J Ralston, Satoru Uzawa, Job Dekker, Barbara J Meyer. Nature 2015
411
3
33

Topological domains in mammalian genomes identified by analysis of chromatin interactions.
Jesse R Dixon, Siddarth Selvaraj, Feng Yue, Audrey Kim, Yan Li, Yin Shen, Ming Hu, Jun S Liu, Bing Ren. Nature 2012
3566
3
33

Heterochromatin drives compartmentalization of inverted and conventional nuclei.
Martin Falk, Yana Feodorova, Natalia Naumova, Maxim Imakaev, Bryan R Lajoie, Heinrich Leonhardt, Boris Joffe, Job Dekker, Geoffrey Fudenberg, Irina Solovei,[...]. Nature 2019
217
3
33

Formation of Chromosomal Domains by Loop Extrusion.
Geoffrey Fudenberg, Maxim Imakaev, Carolyn Lu, Anton Goloborodko, Nezar Abdennur, Leonid A Mirny. Cell Rep 2016
816
3
33

Heterochromatin revisited.
Shiv I S Grewal, Songtao Jia. Nat Rev Genet 2007
894
2
22

Chromatin modifications and their function.
Tony Kouzarides. Cell 2007
7000
2
22

Cohesin Loss Eliminates All Loop Domains.
Suhas S P Rao, Su-Chen Huang, Brian Glenn St Hilaire, Jesse M Engreitz, Elizabeth M Perez, Kyong-Rim Kieffer-Kwon, Adrian L Sanborn, Sarah E Johnstone, Gavin D Bascom, Ivan D Bochkov,[...]. Cell 2017
769
2
22

Single-cell imaging of genome organization and dynamics.
Liangqi Xie, Zhe Liu. Mol Syst Biol 2021
10
2
22

Chromatin architecture reorganization during stem cell differentiation.
Jesse R Dixon, Inkyung Jung, Siddarth Selvaraj, Yin Shen, Jessica E Antosiewicz-Bourget, Ah Young Lee, Zhen Ye, Audrey Kim, Nisha Rajagopal, Wei Xie,[...]. Nature 2015
849
2
22

Genome-Scale Imaging of the 3D Organization and Transcriptional Activity of Chromatin.
Jun-Han Su, Pu Zheng, Seon S Kinrot, Bogdan Bintu, Xiaowei Zhuang. Cell 2020
103
2
22

4D nucleome modeling.
Marco Di Stefano, Jonas Paulsen, Daniel Jost, Marc A Marti-Renom. Curr Opin Genet Dev 2021
11
2
22

Integrated spatial genomics reveals global architecture of single nuclei.
Yodai Takei, Jina Yun, Shiwei Zheng, Noah Ollikainen, Nico Pierson, Jonathan White, Sheel Shah, Julian Thomassie, Shengbao Suo, Chee-Huat Linus Eng,[...]. Nature 2021
61
2
22

Mechanisms and Functions of Chromosome Compartmentalization.
Erica M Hildebrand, Job Dekker. Trends Biochem Sci 2020
60
2
22

Comprehensive mapping of long-range interactions reveals folding principles of the human genome.
Erez Lieberman-Aiden, Nynke L van Berkum, Louise Williams, Maxim Imakaev, Tobias Ragoczy, Agnes Telling, Ido Amit, Bryan R Lajoie, Peter J Sabo, Michael O Dorschner,[...]. Science 2009
4236
2
22

Multiscale 3D Genome Rewiring during Mouse Neural Development.
Boyan Bonev, Netta Mendelson Cohen, Quentin Szabo, Lauriane Fritsch, Giorgio L Papadopoulos, Yaniv Lubling, Xiaole Xu, Xiaodan Lv, Jean-Philippe Hugnot, Amos Tanay,[...]. Cell 2017
545
2
22

Targeted Degradation of CTCF Decouples Local Insulation of Chromosome Domains from Genomic Compartmentalization.
Elphège P Nora, Anton Goloborodko, Anne-Laure Valton, Johan H Gibcus, Alec Uebersohn, Nezar Abdennur, Job Dekker, Leonid A Mirny, Benoit G Bruneau. Cell 2017
725
2
22

A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping.
Suhas S P Rao, Miriam H Huntley, Neva C Durand, Elena K Stamenova, Ivan D Bochkov, James T Robinson, Adrian L Sanborn, Ido Machol, Arina D Omer, Eric S Lander,[...]. Cell 2014
3218
2
22

X-Chromosome Inactivation: A Crossroads Between Chromosome Architecture and Gene Regulation.
Rafael Galupa, Edith Heard. Annu Rev Genet 2018
109
2
22

Chromosome dynamics during interphase: a biophysical perspective.
Maxime Mc Tortora, Hossein Salari, Daniel Jost. Curr Opin Genet Dev 2020
15
2
22

Chromatin organization by an interplay of loop extrusion and compartmental segregation.
Johannes Nuebler, Geoffrey Fudenberg, Maxim Imakaev, Nezar Abdennur, Leonid A Mirny. Proc Natl Acad Sci U S A 2018
266
2
22

Epigenomics in 3D: importance of long-range spreading and specific interactions in epigenomic maintenance.
Daniel Jost, Cédric Vaillant. Nucleic Acids Res 2018
33
2
22

Understanding 3D genome organization by multidisciplinary methods.
Ivana Jerkovic, Giacomo Cavalli. Nat Rev Mol Cell Biol 2021
35
2
22

Nuclear compartmentalization as a mechanism of quantitative control of gene expression.
Prashant Bhat, Drew Honson, Mitchell Guttman. Nat Rev Mol Cell Biol 2021
27
2
22

The Self-Organizing Genome: Principles of Genome Architecture and Function.
Tom Misteli. Cell 2020
95
2
22

A molecular link between gene-specific and chromosome-wide transcriptional repression.
Diana S Chu, Heather E Dawes, Jason D Lieb, Raymond C Chan, Annie F Kuo, Barbara J Meyer. Genes Dev 2002
59
2
22

Genome architecture: domain organization of interphase chromosomes.
Wendy A Bickmore, Bas van Steensel. Cell 2013
466
2
22

DPY-27:a chromosome condensation protein homolog that regulates C. elegans dosage compensation through association with the X chromosome.
P T Chuang, D G Albertson, B J Meyer. Cell 1994
212
2
22

SDC-3 coordinates the assembly of a dosage compensation complex on the nematode X chromosome.
T L Davis, B J Meyer. Development 1997
55
2
22

Monomethylation of histone H4-lysine 20 is involved in chromosome structure and stability and is essential for mouse development.
Hisanobu Oda, Ikuhiro Okamoto, Niall Murphy, Jianhua Chu, Sandy M Price, Michael M Shen, Maria Elena Torres-Padilla, Edith Heard, Danny Reinberg. Mol Cell Biol 2009
223
2
22

Broad chromosomal domains of histone modification patterns in C. elegans.
Tao Liu, Andreas Rechtsteiner, Thea A Egelhofer, Anne Vielle, Isabel Latorre, Ming-Sin Cheung, Sevinc Ercan, Kohta Ikegami, Morten Jensen, Paulina Kolasinska-Zwierz,[...]. Genome Res 2011
190
2
22

Splicing Activation by Rbfox Requires Self-Aggregation through Its Tyrosine-Rich Domain.
Yi Ying, Xiao-Jun Wang, Celine K Vuong, Chia-Ho Lin, Andrey Damianov, Douglas L Black. Cell 2017
57
2
22

Topological domain structure of the Escherichia coli chromosome.
Lisa Postow, Christine D Hardy, Javier Arsuaga, Nicholas R Cozzarelli. Genes Dev 2004
315
2
22

Early aspects of Caenorhabditis elegans sex determination and dosage compensation are regulated by a zinc-finger protein.
M L Nonet, B J Meyer. Nature 1991
55
2
22

Chromosome-wide mechanisms to decouple gene expression from gene dose during sex-chromosome evolution.
Bayly S Wheeler, Erika Anderson, Christian Frøkjær-Jensen, Qian Bian, Erik Jorgensen, Barbara J Meyer. Elife 2016
18
2
22

X chromosome repression by localization of the C. elegans dosage compensation machinery to sites of transcription initiation.
Sevinc Ercan, Paul G Giresi, Christina M Whittle, Xinmin Zhang, Roland D Green, Jason D Lieb. Nat Genet 2007
93
2
22

Condensin controls recruitment of RNA polymerase II to achieve nematode X-chromosome dosage compensation.
William S Kruesi, Leighton J Core, Colin T Waters, John T Lis, Barbara J Meyer. Elife 2013
109
2
22

Molecular antagonism between X-chromosome and autosome signals determines nematode sex.
Behnom Farboud, Paola Nix, Margaret M Jow, John M Gladden, Barbara J Meyer. Genes Dev 2013
21
2
22

Dynamic Control of X Chromosome Conformation and Repression by a Histone H4K20 Demethylase.
Katjuša Brejc, Qian Bian, Satoru Uzawa, Bayly S Wheeler, Erika C Anderson, David S King, Philip J Kranzusch, Christine G Preston, Barbara J Meyer. Cell 2017
39
2
22

Disruptions of topological chromatin domains cause pathogenic rewiring of gene-enhancer interactions.
Darío G Lupiáñez, Katerina Kraft, Verena Heinrich, Peter Krawitz, Francesco Brancati, Eva Klopocki, Denise Horn, Hülya Kayserili, John M Opitz, Renata Laxova,[...]. Cell 2015
1044
2
22

Activation of proto-oncogenes by disruption of chromosome neighborhoods.
Denes Hnisz, Abraham S Weintraub, Daniel S Day, Anne-Laure Valton, Rasmus O Bak, Charles H Li, Johanna Goldmann, Bryan R Lajoie, Zi Peng Fan, Alla A Sigova,[...]. Science 2016
520
2
22

Genetic and molecular analysis of fox-1, a numerator element involved in Caenorhabditis elegans primary sex determination.
M Skipper, C A Milne, J Hodgkin. Genetics 1999
41
2
22

X Chromosome Domain Architecture Regulates Caenorhabditis elegans Lifespan but Not Dosage Compensation.
Erika C Anderson, Phillip A Frankino, Ryo Higuchi-Sanabria, Qiming Yang, Qian Bian, Katie Podshivalova, Aram Shin, Cynthia Kenyon, Andrew Dillin, Barbara J Meyer. Dev Cell 2019
17
2
22

On the existence and functionality of topologically associating domains.
Jonathan A Beagan, Jennifer E Phillips-Cremins. Nat Genet 2020
100
2
22

Developmentally regulated Shh expression is robust to TAD perturbations.
Iain Williamson, Lauren Kane, Paul S Devenney, Ilya M Flyamer, Eve Anderson, Fiona Kilanowski, Robert E Hill, Wendy A Bickmore, Laura A Lettice. Development 2019
61
2
22

A ONECUT homeodomain protein communicates X chromosome dose to specify Caenorhabditis elegans sexual fate by repressing a sex switch gene.
John M Gladden, Barbara J Meyer. Genetics 2007
21
2
22

Dosage compensation proteins targeted to X chromosomes by a determinant of hermaphrodite fate.
H E Dawes, D S Berlin, D M Lapidus, C Nusbaum, T L Davis, B J Meyer. Science 1999
98
2
22

Genome-wide profiling reveals functional interplay of DNA sequence composition, transcriptional activity, and nucleosome positioning in driving DNA supercoiling and helix destabilization in C. elegans.
Kristina Krassovsky, Rajarshi P Ghosh, Barbara J Meyer. Genome Res 2021
2
2
100

H4K20me1 and H3K27me3 are concurrently loaded onto the inactive X chromosome but dispensable for inducing gene silencing.
Sjoerd J D Tjalsma, Mayako Hori, Yuko Sato, Aurelie Bousard, Akito Ohi, Ana Cláudia Raposo, Julia Roensch, Agnes Le Saux, Jumpei Nogami, Kazumitsu Maehara,[...]. EMBO Rep 2021
14
2
22


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.

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