A citation-based method for searching scientific literature

Lorena Magraner-Pardo, Roman A Laskowski, Tirso Pons, Janet M Thornton. Sci Rep 2021
Times Cited: 2







List of co-cited articles
articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


UALCAN: A Portal for Facilitating Tumor Subgroup Gene Expression and Survival Analyses.
Darshan S Chandrashekar, Bhuwan Bashel, Sai Akshaya Hodigere Balasubramanya, Chad J Creighton, Israel Ponce-Rodriguez, Balabhadrapatruni V S K Chakravarthi, Sooryanarayana Varambally. Neoplasia 2017
50

Oncogenomic analysis of mycosis fungoides reveals major differences with Sezary syndrome.
Remco van Doorn, Marloes S van Kester, Remco Dijkman, Maarten H Vermeer, Aat A Mulder, Karoly Szuhai, Jeroen Knijnenburg, Judith M Boer, Rein Willemze, Cornelis P Tensen. Blood 2009
129
50


PHF5A Epigenetically Inhibits Apoptosis to Promote Breast Cancer Progression.
Yi-Zi Zheng, Meng-Zhu Xue, Hong-Jie Shen, Xiao-Guang Li, Ding Ma, Yue Gong, Yi-Rong Liu, Feng Qiao, Hong-Yan Xie, Bi Lian,[...]. Cancer Res 2018
37
50

FASTKD2 nonsense mutation in an infantile mitochondrial encephalomyopathy associated with cytochrome c oxidase deficiency.
Daniele Ghezzi, Ann Saada, Pio D'Adamo, Erika Fernandez-Vizarra, Paolo Gasparini, Valeria Tiranti, Orly Elpeleg, Massimo Zeviani. Am J Hum Genet 2008
76
50

Identification of malignancy factors by analyzing cystic tumors of the pancreas.
Andrea Bauer, Jörg Kleeff, Melanie Bier, Martin Wirtz, Hany Kayed, Irene Esposito, Murray Korc, Mathias Hafner, Jörg D Hoheisel, Helmut Friess. Pancreatology 2009
14
50

The BioGRID interaction database: 2019 update.
Rose Oughtred, Chris Stark, Bobby-Joe Breitkreutz, Jennifer Rust, Lorrie Boucher, Christie Chang, Nadine Kolas, Lara O'Donnell, Genie Leung, Rochelle McAdam,[...]. Nucleic Acids Res 2019
580
50

GEPIA2: an enhanced web server for large-scale expression profiling and interactive analysis.
Zefang Tang, Boxi Kang, Chenwei Li, Tianxiang Chen, Zemin Zhang. Nucleic Acids Res 2019
50


RAP--a putative RNA-binding domain.
Ian Lee, Wanjin Hong. Trends Biochem Sci 2004
41
50

Development of small-molecule tropomyosin receptor kinase (TRK) inhibitors for NTRK fusion cancers.
Tingting Jiang, Guan Wang, Yao Liu, Lu Feng, Meng Wang, Jie Liu, Yi Chen, Liang Ouyang. Acta Pharm Sin B 2021
28
50

Identification of FASTKD2 compound heterozygous mutations as the underlying cause of autosomal recessive MELAS-like syndrome.
Da Hye Yoo, Young-Chul Choi, Da Eun Nam, Sun Seong Choi, Ji Won Kim, Byung-Ok Choi, Ki Wha Chung. Mitochondrion 2017
25
50

STRING v11: protein-protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets.
Damian Szklarczyk, Annika L Gable, David Lyon, Alexander Junge, Stefan Wyder, Jaime Huerta-Cepas, Milan Simonovic, Nadezhda T Doncheva, John H Morris, Peer Bork,[...]. Nucleic Acids Res 2019
50

Metascape provides a biologist-oriented resource for the analysis of systems-level datasets.
Yingyao Zhou, Bin Zhou, Lars Pache, Max Chang, Alireza Hadj Khodabakhshi, Olga Tanaseichuk, Christopher Benner, Sumit K Chanda. Nat Commun 2019
50

Identification of the Six-RNA-Binding Protein Signature for Prognosis Prediction in Bladder Cancer.
Yucai Wu, Yi Liu, Anbang He, Bao Guan, Shiming He, Cuijian Zhang, Zhengjun Kang, Yanqing Gong, Xuesong Li, Liqun Zhou. Front Genet 2020
9
50

Molecular markers of endometrial carcinoma detected in uterine aspirates.
Eva Colas, Cristina Perez, Silvia Cabrera, Nuria Pedrola, Marta Monge, Josep Castellvi, Fernando Eyzaguirre, Jesus Gregorio, Anna Ruiz, Marta Llaurado,[...]. Int J Cancer 2011
73
50

Fast kinase domain-containing protein 3 is a mitochondrial protein essential for cellular respiration.
Maria Simarro, Alfredo Gimenez-Cassina, Nancy Kedersha, Jean-Bernard Lazaro, Guillaume O Adelmant, Jarrod A Marto, Kirsten Rhee, Sarah Tisdale, Nika Danial, Charaf Benarafa,[...]. Biochem Biophys Res Commun 2010
43
50

Deletion of FAST (Fas-activated serine/threonine phosphoprotein) ameliorates immune complex arthritis in mice.
Maria Simarro, Mei Chen, Miguel A De la Fuente, José M Eiros, Antonio Orduña, Paul Anderson. Mod Rheumatol 2016
3
50

A compendium of mutational cancer driver genes.
Francisco Martínez-Jiménez, Ferran Muiños, Inés Sentís, Jordi Deu-Pons, Iker Reyes-Salazar, Claudia Arnedo-Pac, Loris Mularoni, Oriol Pich, Jose Bonet, Hanna Kranas,[...]. Nat Rev Cancer 2020
210
50

The cBio cancer genomics portal: an open platform for exploring multidimensional cancer genomics data.
Ethan Cerami, Jianjiong Gao, Ugur Dogrusoz, Benjamin E Gross, Selcuk Onur Sumer, Bülent Arman Aksoy, Anders Jacobsen, Caitlin J Byrne, Michael L Heuer, Erik Larsson,[...]. Cancer Discov 2012
50

The F box protein Fbx6 regulates Chk1 stability and cellular sensitivity to replication stress.
You-Wei Zhang, John Brognard, Chris Coughlin, Zhongsheng You, Marisa Dolled-Filhart, Aaron Aslanian, Gerard Manning, Robert T Abraham, Tony Hunter. Mol Cell 2009
137
50

The FASTK family of proteins: emerging regulators of mitochondrial RNA biology.
Alexis A Jourdain, Johannes Popow, Miguel A de la Fuente, Jean-Claude Martinou, Paul Anderson, Maria Simarro. Nucleic Acids Res 2017
38
50

A six gene expression signature defines aggressive subtypes and predicts outcome in childhood and adult acute lymphoblastic leukemia.
Jin Wang, Jian-Qing Mi, Alexandra Debernardi, Anne-Laure Vitte, Anouk Emadali, Julia A Meyer, Konstantina Charmpi, Bernard Ycart, Mary B Callanan, William L Carroll,[...]. Oncotarget 2015
26
50

The Mitochondrial Isoform of FASTK Modulates Nonopsonic Phagocytosis of Bacteria by Macrophages via Regulation of Respiratory Complex I.
Ana García Del Río, Aitor Delmiro, Miguel Angel Martín, Roberto Cantalapiedra, Raquel Carretero, Carlos Durántez, Fabiola Menegotto, María Morán, Pablo Serrano-Lorenzo, Miguel Angel De la Fuente,[...]. J Immunol 2018
3
50

Integrative analysis of complex cancer genomics and clinical profiles using the cBioPortal.
Jianjiong Gao, Bülent Arman Aksoy, Ugur Dogrusoz, Gideon Dresdner, Benjamin Gross, S Onur Sumer, Yichao Sun, Anders Jacobsen, Rileen Sinha, Erik Larsson,[...]. Sci Signal 2013
50

Overexpression of Fbxo6 inactivates spindle checkpoint by interacting with Mad2 and BubR1.
Han-Zhang Xu, Zhuo-Qun Wang, Hui-Zhuang Shan, Li Zhou, Li Yang, Hu Lei, Bin Liu, Ying-Li Wu. Cell Cycle 2018
9
50


Gene amplification: mechanisms and involvement in cancer.
Atsuka Matsui, Tatsuya Ihara, Hiraku Suda, Hirofumi Mikami, Kentaro Semba. Biomol Concepts 2013
54
50

Mitochondria in cancer.
Debora Grasso, Luca X Zampieri, Tânia Capelôa, Justine A Van de Velde, Pierre Sonveaux. Cell Stress 2020
55
50

The genomic landscapes of human breast and colorectal cancers.
Laura D Wood, D Williams Parsons, Siân Jones, Jimmy Lin, Tobias Sjöblom, Rebecca J Leary, Dong Shen, Simina M Boca, Thomas Barber, Janine Ptak,[...]. Science 2007
50

The MIntAct project--IntAct as a common curation platform for 11 molecular interaction databases.
Sandra Orchard, Mais Ammari, Bruno Aranda, Lionel Breuza, Leonardo Briganti, Fiona Broackes-Carter, Nancy H Campbell, Gayatri Chavali, Carol Chen, Noemi del-Toro,[...]. Nucleic Acids Res 2014
984
50

Development and validation of a clinical cancer genomic profiling test based on massively parallel DNA sequencing.
Garrett M Frampton, Alex Fichtenholtz, Geoff A Otto, Kai Wang, Sean R Downing, Jie He, Michael Schnall-Levin, Jared White, Eric M Sanford, Peter An,[...]. Nat Biotechnol 2013
50


Scalable Open Science Approach for Mutation Calling of Tumor Exomes Using Multiple Genomic Pipelines.
Kyle Ellrott, Matthew H Bailey, Gordon Saksena, Kyle R Covington, Cyriac Kandoth, Chip Stewart, Julian Hess, Singer Ma, Kami E Chiotti, Michael McLellan,[...]. Cell Syst 2018
311
50


Fas-activated serine/threonine phosphoprotein promotes immune-mediated pulmonary inflammation.
Maria Simarro, Giorgio Giannattasio, Miguel A De la Fuente, Charaf Benarafa, Kulandayan K Subramanian, Rumey Ishizawar, Barbara Balestrieri, Emma M Andersson, Hongbo R Luo, Antonio Orduña,[...]. J Immunol 2010
18
50

The use of hsa-miR-21, hsa-miR-181b and hsa-miR-106a as prognostic indicators of astrocytoma.
Feng Zhi, Xi Chen, Suinuan Wang, Xiwei Xia, Yimin Shi, Wei Guan, Naiyuan Shao, Hongtao Qu, Changchun Yang, Yi Zhang,[...]. Eur J Cancer 2010
121
50

A novel transcription complex that selectively modulates apoptosis of breast cancer cells through regulation of FASTKD2.
Kay T Yeung, Sharmistha Das, Jin Zhang, Alejandro Lomniczi, Sergio R Ojeda, Chong-Feng Xu, Thomas A Neubert, Herbert H Samuels. Mol Cell Biol 2011
43
50

miR-106a-5p inhibits the proliferation and migration of astrocytoma cells and promotes apoptosis by targeting FASTK.
Feng Zhi, Guangxin Zhou, Naiyuan Shao, Xiwei Xia, Yimin Shi, Qiang Wang, Yi Zhang, Rong Wang, Lian Xue, Suinuan Wang,[...]. PLoS One 2013
50
50

RNA-Seq gene expression estimation with read mapping uncertainty.
Bo Li, Victor Ruotti, Ron M Stewart, James A Thomson, Colin N Dewey. Bioinformatics 2010
654
50


Screening for Thyroid Cancer: US Preventive Services Task Force Recommendation Statement.
Kirsten Bibbins-Domingo, David C Grossman, Susan J Curry, Michael J Barry, Karina W Davidson, Chyke A Doubeni, John W Epling, Alex R Kemper, Alex H Krist, Ann E Kurth,[...]. JAMA 2017
118
50

Hypoxia Molecular Characterization in Hepatocellular Carcinoma Identifies One Risk Signature and Two Nomograms for Clinical Management.
Zaoqu Liu, Long Liu, Taoyuan Lu, Libo Wang, Zhaonan Li, Dechao Jiao, Xinwei Han. J Oncol 2021
21
50


TIMER: A Web Server for Comprehensive Analysis of Tumor-Infiltrating Immune Cells.
Taiwen Li, Jingyu Fan, Binbin Wang, Nicole Traugh, Qianming Chen, Jun S Liu, Bo Li, X Shirley Liu. Cancer Res 2017
50



MethylMix 2.0: an R package for identifying DNA methylation genes.
Pierre-Louis Cedoz, Marcos Prunello, Kevin Brennan, Olivier Gevaert. Bioinformatics 2018
44
50

GSEA-P: a desktop application for Gene Set Enrichment Analysis.
Aravind Subramanian, Heidi Kuehn, Joshua Gould, Pablo Tamayo, Jill P Mesirov. Bioinformatics 2007
821
50



Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.