A citation-based method for searching scientific literature

Colette L Baxter, Saša Šviković, Julian E Sale, Caroline Dean, Silvia Costa. Proc Natl Acad Sci U S A 2021
Times Cited: 4







List of co-cited articles
31 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Isolating apparently pure libraries of replication origins from complex genomes.
Larry D Mesner, Emily L Crawford, Joyce L Hamlin. Mol Cell 2006
50
50

Friedreich's ataxia-associated GAA repeats induce replication-fork reversal and unusual molecular junctions.
Cindy Follonier, Judith Oehler, Raquel Herrador, Massimo Lopes. Nat Struct Mol Biol 2013
65
50

G-quadruplex-induced instability during leading-strand replication.
Judith Lopes, Aurèle Piazza, Rodrigo Bermejo, Barry Kriegsman, Arianna Colosio, Marie-Paule Teulade-Fichou, Marco Foiani, Alain Nicolas. EMBO J 2011
219
50

Nucleotide Pool Depletion Induces G-Quadruplex-Dependent Perturbation of Gene Expression.
Charikleia Papadopoulou, Guillaume Guilbaud, Davide Schiavone, Julian E Sale. Cell Rep 2015
48
50

Determinants of G quadruplex-induced epigenetic instability in REV1-deficient cells.
Davide Schiavone, Guillaume Guilbaud, Pierre Murat, Charikleia Papadopoulou, Peter Sarkies, Marie-Noëlle Prioleau, Shankar Balasubramanian, Julian E Sale. EMBO J 2014
88
50

Pif1 is essential for efficient replisome progression through lagging strand G-quadruplex DNA secondary structures.
Danielle Dahan, Ioannis Tsirkas, Daniel Dovrat, Melanie A Sparks, Saurabh P Singh, Roberto Galletto, Amir Aharoni. Nucleic Acids Res 2018
44
50

Chromosome fragility at GAA tracts in yeast depends on repeat orientation and requires mismatch repair.
Hyun-Min Kim, Vidhya Narayanan, Piotr A Mieczkowski, Thomas D Petes, Maria M Krasilnikova, Sergei M Mirkin, Kirill S Lobachev. EMBO J 2008
82
50

Replication of G Quadruplex DNA.
Leticia Koch Lerner, Julian E Sale. Genes (Basel) 2019
72
50

Mutagenic capacity of endogenous G4 DNA underlies genome instability in FANCJ-defective C. elegans.
Evelien Kruisselbrink, Victor Guryev, Karin Brouwer, Daphne B Pontier, Edwin Cuppen, Marcel Tijsterman. Curr Biol 2008
150
50

Stalled DNA Replication Forks at the Endogenous GAA Repeats Drive Repeat Expansion in Friedreich's Ataxia Cells.
Jeannine Gerhardt, Angela D Bhalla, Jill Sergesketter Butler, James W Puckett, Peter B Dervan, Zev Rosenwaks, Marek Napierala. Cell Rep 2016
39
50

Epigenetic instability due to defective replication of structured DNA.
Peter Sarkies, Charlie Reams, Laura J Simpson, Julian E Sale. Mol Cell 2010
197
50

Contributions of the specialised DNA polymerases to replication of structured DNA.
Caroline M Wickramasinghe, Hayat Arzouk, Alexander Frey, Ahmed Maiter, Julian E Sale. DNA Repair (Amst) 2015
34
50

FANCJ coordinates two pathways that maintain epigenetic stability at G-quadruplex DNA.
Peter Sarkies, Pierre Murat, Lara G Phillips, K J Patel, Shankar Balasubramanian, Julian E Sale. Nucleic Acids Res 2012
151
50

Timeless couples G-quadruplex detection with processing by DDX11 helicase during DNA replication.
Leticia K Lerner, Sandro Holzer, Mairi L Kilkenny, Saša Šviković, Pierre Murat, Davide Schiavone, Cara B Eldridge, Alice Bittleston, Joseph D Maman, Dana Branzei,[...]. EMBO J 2020
31
50

EXO1 resection at G-quadruplex structures facilitates resolution and replication.
Susanna Stroik, Kevin Kurtz, Kevin Lin, Sergey Karachenets, Chad L Myers, Anja-Katrin Bielinsky, Eric A Hendrickson. Nucleic Acids Res 2020
17
50

Local epigenetic reprogramming induced by G-quadruplex ligands.
Guillaume Guilbaud, Pierre Murat, Bénédicte Recolin, Beth C Campbell, Ahmed Maiter, Julian E Sale, Shankar Balasubramanian. Nat Chem 2017
62
50

A Live-Cell Imaging Approach for Measuring DNA Replication Rates.
Daniel Dovrat, Danielle Dahan, Shachar Sherman, Ioannis Tsirkas, Natalie Elia, Amir Aharoni. Cell Rep 2018
13
50

Replication stalling at Friedreich's ataxia (GAA)n repeats in vivo.
Maria M Krasilnikova, Sergei M Mirkin. Mol Cell Biol 2004
153
50

PrimPol Is Required for Replicative Tolerance of G Quadruplexes in Vertebrate Cells.
Davide Schiavone, Stanislaw K Jozwiakowski, Marina Romanello, Guillaume Guilbaud, Thomas A Guilliam, Laura J Bailey, Julian E Sale, Aidan J Doherty. Mol Cell 2016
102
50

Disruption of dog-1 in Caenorhabditis elegans triggers deletions upstream of guanine-rich DNA.
Iris Cheung, Michael Schertzer, Ann Rose, Peter M Lansdorp. Nat Genet 2002
209
50

Mammalian telomeres resemble fragile sites and require TRF1 for efficient replication.
Agnel Sfeir, Settapong T Kosiyatrakul, Dirk Hockemeyer, Sheila L MacRae, Jan Karlseder, Carl L Schildkraut, Titia de Lange. Cell 2009
688
50


R-loop formation during S phase is restricted by PrimPol-mediated repriming.
Saša Šviković, Alastair Crisp, Sue Mei Tan-Wong, Thomas A Guilliam, Aidan J Doherty, Nicholas J Proudfoot, Guillaume Guilbaud, Julian E Sale. EMBO J 2019
56
50

Genome-wide Hi-C analyses in wild-type and mutants reveal high-resolution chromatin interactions in Arabidopsis.
Suhua Feng, Shawn J Cokus, Veit Schubert, Jixian Zhai, Matteo Pellegrini, Steven E Jacobsen. Mol Cell 2014
207
50

R-loop stabilization represses antisense transcription at the Arabidopsis FLC locus.
Qianwen Sun, Tibor Csorba, Konstantina Skourti-Stathaki, Nicholas J Proudfoot, Caroline Dean. Science 2013
237
50


Characterization of chromosomal architecture in Arabidopsis by chromosome conformation capture.
Stefan Grob, Marc W Schmid, Nathan W Luedtke, Thomas Wicker, Ueli Grossniklaus. Genome Biol 2013
68
50

R-loop resolution promotes co-transcriptional chromatin silencing.
Congyao Xu, Zhe Wu, Hong-Chao Duan, Xiaofeng Fang, Guifang Jia, Caroline Dean. Nat Commun 2021
24
50

The 3' processing of antisense RNAs physically links to chromatin-based transcriptional control.
Xiaofeng Fang, Zhe Wu, Oleg Raitskin, Kimberly Webb, Philipp Voigt, Tiancong Lu, Martin Howard, Caroline Dean. Proc Natl Acad Sci U S A 2020
21
50


Supercoiling of the DNA template during transcription.
L F Liu, J C Wang. Proc Natl Acad Sci U S A 1987
50


The Helicase PIF1 Facilitates Resection over Sequences Prone to Forming G4 Structures.
Sonia Jimeno, Rosa Camarillo, Fernando Mejías-Navarro, Maria Jesús Fernández-Ávila, Isabel Soria-Bretones, Rosario Prados-Carvajal, Pablo Huertas. Cell Rep 2018
24
25

Cell lines derived from avian lymphomas exhibit two distinct phenotypes.
T W Baba, B P Giroir, E H Humphries. Virology 1985
176
25


Non-canonical RNA-directed DNA methylation.
Diego Cuerda-Gil, R Keith Slotkin. Nat Plants 2016
140
25

Loss of Topoisomerase I leads to R-loop-mediated transcriptional blocks during ribosomal RNA synthesis.
Aziz El Hage, Sarah L French, Ann L Beyer, David Tollervey. Genes Dev 2010
295
25


Ribonucleoprotein-masked nicks at 50-kbp intervals in the eukaryotic genomic DNA.
Lóránt Székvölgyi, Zsuzsa Rákosy, Bálint L Bálint, Endre Kókai, László Imre, György Vereb, Zsolt Bacsó, Katalin Goda, Sándor Varga, Margit Balázs,[...]. Proc Natl Acad Sci U S A 2007
18
25

Nonrandom domain organization of the Arabidopsis genome at the nuclear periphery.
Xiuli Bi, Ying-Juan Cheng, Bo Hu, Xiaoli Ma, Rui Wu, Jia-Wei Wang, Chang Liu. Genome Res 2017
66
25

Intergenic transcription by RNA polymerase II coordinates Pol IV and Pol V in siRNA-directed transcriptional gene silencing in Arabidopsis.
Binglian Zheng, Zhengming Wang, Shengben Li, Bin Yu, Jin-Yuan Liu, Xuemei Chen. Genes Dev 2009
177
25

Dynamics and function of DNA methylation in plants.
Huiming Zhang, Zhaobo Lang, Jian-Kang Zhu. Nat Rev Mol Cell Biol 2018
528
25


Biophysical characterization of histone H3.3 K27M point mutation.
Szabolcs Hetey, Beáta Boros-Oláh, Tímea Kuik-Rózsa, Qiuzhen Li, Zsolt Karányi, Zoltán Szabó, Jason Roszik, Nikoletta Szalóki, György Vámosi, Katalin Tóth,[...]. Biochem Biophys Res Commun 2017
8
25

Pathway conversion enables a double-lock mechanism to maintain DNA methylation and genome stability.
Li He, Cheng Zhao, Qingzhu Zhang, Gaurav Zinta, Dong Wang, Rosa Lozano-Durán, Jian-Kang Zhu. Proc Natl Acad Sci U S A 2021
5
25

Subunits of the PBAP Chromatin Remodeler Are Capable of Mediating Enhancer-Driven Transcription in Drosophila.
Yulii V Shidlovskii, Oleg V Bylino, Alexander V Shaposhnikov, Zaur M Kachaev, Lyubov A Lebedeva, Valeria V Kolesnik, Diego Amendola, Giovanna De Simone, Nadia Formicola, Paul Schedl,[...]. Int J Mol Sci 2021
5
25

Serpentine: a flexible 2D binning method for differential Hi-C analysis.
Lyam Baudry, Gaël A Millot, Agnes Thierry, Romain Koszul, Vittore F Scolari. Bioinformatics 2020
6
25

Chromatin compaction by a polycomb group protein complex.
Nicole J Francis, Robert E Kingston, Christopher L Woodcock. Science 2004
569
25


ROS1, a repressor of transcriptional gene silencing in Arabidopsis, encodes a DNA glycosylase/lyase.
Zhizhong Gong, Teresa Morales-Ruiz, Rafael R Ariza, Teresa Roldán-Arjona, Lisa David, Jian Kang Zhu. Cell 2002
457
25


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.