A citation-based method for searching scientific literature

Margaret A Myers, Amanda P Smith, Lindey C Lane, David J Moquin, Rosemary Aogo, Stacie Woolard, Paul Thomas, Peter Vogel, Amber M Smith. Elife 2021
Times Cited: 3







List of co-cited articles
2 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Influenza Virus Infection Model With Density Dependence Supports Biphasic Viral Decay.
Amanda P Smith, David J Moquin, Veronika Bernhauerova, Amber M Smith. Front Microbiol 2018
22
66

Kinetics of influenza A virus infection in humans.
Prasith Baccam, Catherine Beauchemin, Catherine A Macken, Frederick G Hayden, Alan S Perelson. J Virol 2006
382
66

Microbial etiology of acute pneumonia in hospitalized patients.
J H Bates, G D Campbell, A L Barron, G A McCracken, P N Morgan, E B Moses, C M Davis. Chest 1992
189
33

An accurate two-phase approximate solution to an acute viral infection model.
Amber M Smith, Frederick R Adler, Alan S Perelson. J Math Biol 2010
54
33

Sendai virus, a murine parainfluenza virus type 1, replicates to a level similar to human PIV1 in the upper and lower respiratory tract of African green monkeys and chimpanzees.
Mario H Skiadopoulos, Sonja R Surman, Jeffrey M Riggs, William R Elkins, Marisa St Claire, Machiko Nishio, Dominique Garcin, Daniel Kolakofsky, Peter L Collins, Brian R Murphy. Virology 2002
38
33

Parainfluenza viruses.
Kelly J Henrickson. Clin Microbiol Rev 2003
278
33

Human parainfluenza virus serotypes differ in their kinetics of replication and cytokine secretion in human tracheobronchial airway epithelium.
Anne Schaap-Nutt, Rachael Liesman, Emmalene J Bartlett, Margaret A Scull, Peter L Collins, Raymond J Pickles, Alexander C Schmidt. Virology 2012
17
33

Dynamics of influenza virus infection and pathology.
Roberto A Saenz, Michelle Quinlivan, Debra Elton, Shona Macrae, Anthony S Blunden, Jennifer A Mumford, Janet M Daly, Paul Digard, Ann Cullinane, Bryan T Grenfell,[...]. J Virol 2010
110
33

Combinations of Oseltamivir and T-705 Extend the Treatment Window for Highly Pathogenic Influenza A(H5N1) Virus Infection in Mice.
Bindumadhav M Marathe, Sook-San Wong, Peter Vogel, Fernando Garcia-Alcalde, Robert G Webster, Richard J Webby, Isabel Najera, Elena A Govorkova. Sci Rep 2016
33
33

Type I interferons in infectious disease.
Finlay McNab, Katrin Mayer-Barber, Alan Sher, Andreas Wack, Anne O'Garra. Nat Rev Immunol 2015
949
33

Seasonal and pandemic human influenza viruses attach better to human upper respiratory tract epithelium than avian influenza viruses.
Debby van Riel, Michael A den Bakker, Lonneke M E Leijten, Salin Chutinimitkul, Vincent J Munster, Emmie de Wit, Guus F Rimmelzwaan, Ron A M Fouchier, Albert D M E Osterhaus, Thijs Kuiken. Am J Pathol 2010
114
33

The pulmonary localization of virus-specific T lymphocytes is governed by the tissue tropism of infection.
Cory J Knudson, Kayla A Weiss, Stacey M Hartwig, Steven M Varga. J Virol 2014
34
33

Linking influenza virus tissue tropism to population-level reproductive fitness.
Leslie A Reperant, Thijs Kuiken, Bryan T Grenfell, Albert D M E Osterhaus, Andrew P Dobson. PLoS One 2012
23
33

Toward gene therapy for cystic fibrosis using a lentivirus pseudotyped with Sendai virus envelopes.
Katsuyuki Mitomo, Uta Griesenbach, Makoto Inoue, Lucinda Somerton, Cuixiang Meng, Eiji Akiba, Toshiaki Tabata, Yasuji Ueda, Gad M Frankel, Raymond Farley,[...]. Mol Ther 2010
76
33

Early local immune defences in the respiratory tract.
Akiko Iwasaki, Ellen F Foxman, Ryan D Molony. Nat Rev Immunol 2017
114
33

Epidemiology and clinical presentation of the four human parainfluenza virus types.
Wen-Kuan Liu, Qian Liu, De-Hui Chen, Huan-Xi Liang, Xiao-Kai Chen, Wen-Bo Huang, Sheng Qin, Zi-Feng Yang, Rong Zhou. BMC Infect Dis 2013
83
33


Roles of anti-hemagglutinin IgA and IgG antibodies in different sites of the respiratory tract of vaccinated mice in preventing lethal influenza pneumonia.
Reiko Ito, Yasuko Asahi Ozaki, Tomoki Yoshikawa, Hideki Hasegawa, Yuko Sato, Yujiro Suzuki, Ryosuke Inoue, Tsuneo Morishima, Naomi Kondo, Tetsutaro Sata,[...]. Vaccine 2003
79
33


Varying Inoculum Dose to Assess the Roles of the Immune Response and Target Cell Depletion by the Pathogen in Control of Acute Viral Infections.
James R Moore, Hasan Ahmed, Balaji Manicassamy, Adolfo Garcia-Sastre, Andreas Handel, Rustom Antia. Bull Math Biol 2020
5
33

Pathology of human influenza revisited.
Thijs Kuiken, Jeffery K Taubenberger. Vaccine 2008
227
33

Leveraging Computational Modeling to Understand Infectious Diseases.
Adrianne L Jenner, Rosemary A Aogo, Courtney L Davis, Amber M Smith, Morgan Craig. Curr Pathobiol Rep 2020
4
33

Effect of 1918 PB1-F2 expression on influenza A virus infection kinetics.
Amber M Smith, Frederick R Adler, Julie L McAuley, Ryan N Gutenkunst, Ruy M Ribeiro, Jonathan A McCullers, Alan S Perelson. PLoS Comput Biol 2011
49
33

Timing of Antiviral Treatment Initiation is Critical to Reduce SARS-CoV-2 Viral Load.
Antonio Gonçalves, Julie Bertrand, Ruian Ke, Emmanuelle Comets, Xavier de Lamballerie, Denis Malvy, Andrés Pizzorno, Olivier Terrier, Manuel Rosa Calatrava, France Mentré,[...]. CPT Pharmacometrics Syst Pharmacol 2020
62
33

Pathogenesis of acute respiratory illness caused by human parainfluenza viruses.
Henrick Schomacker, Anne Schaap-Nutt, Peter L Collins, Alexander C Schmidt. Curr Opin Virol 2012
38
33

Validated Models of Immune Response to Virus Infection.
Amber M Smith. Curr Opin Syst Biol 2018
10
33

Clinical benefit of remdesivir in rhesus macaques infected with SARS-CoV-2.
Brandi N Williamson, Friederike Feldmann, Benjamin Schwarz, Kimberly Meade-White, Danielle P Porter, Jonathan Schulz, Neeltje van Doremalen, Ian Leighton, Claude Kwe Yinda, Lizzette Pérez-Pérez,[...]. Nature 2020
312
33

COVID-19 virtual patient cohort suggests immune mechanisms driving disease outcomes.
Adrianne L Jenner, Rosemary A Aogo, Sofia Alfonso, Vivienne Crowe, Xiaoyan Deng, Amanda P Smith, Penelope A Morel, Courtney L Davis, Amber M Smith, Morgan Craig. PLoS Pathog 2021
5
33

Kinetics of coinfection with influenza A virus and Streptococcus pneumoniae.
Amber M Smith, Frederick R Adler, Ruy M Ribeiro, Ryan N Gutenkunst, Julie L McAuley, Jonathan A McCullers, Alan S Perelson. PLoS Pathog 2013
117
33

Illumination of parainfluenza virus infection and transmission in living animals reveals a tissue-specific dichotomy.
Crystal W Burke, John N Mason, Sherri L Surman, Bart G Jones, Emilie Dalloneau, Julia L Hurwitz, Charles J Russell. PLoS Pathog 2011
38
33

Decoding type I and III interferon signalling during viral infection.
Emily V Mesev, Robert A LeDesma, Alexander Ploss. Nat Microbiol 2019
124
33


Allometric relationships of cell numbers and size in the mammalian lung.
K C Stone, R R Mercer, P Gehr, B Stockstill, J D Crapo. Am J Respir Cell Mol Biol 1992
358
33

Modeling of fusion inhibitor treatment of RSV in African green monkeys.
Gilberto González-Parra, Hana M Dobrovolny. J Theor Biol 2018
9
33

Parainfluenza virus lower respiratory tract disease after hematopoietic cell transplant: viral detection in the lung predicts outcome.
Sachiko Seo, Hu Xie, Angela P Campbell, Jane M Kuypers, Wendy M Leisenring, Janet A Englund, Michael Boeckh. Clin Infect Dis 2014
80
33

Murine tracheal and nasal septal epithelium for air-liquid interface cultures: a comparative study.
Bradford A Woodworth, Marcelo B Antunes, Geeta Bhargave, James N Palmer, Noam A Cohen. Am J Rhinol 2007
50
33

Parainfluenza Virus in the Hospitalized Adult.
Elliott Russell, Michael G Ison. Clin Infect Dis 2017
11
33

Mathematical modelling identifies the role of adaptive immunity as a key controller of respiratory syncytial virus in cotton rats.
Darren Wethington, Olivia Harder, Karthik Uppulury, William C L Stewart, Phylip Chen, Tiffany King, Susan D Reynolds, Alan S Perelson, Mark E Peeples, Stefan Niewiesk,[...]. J R Soc Interface 2019
11
33

Role of IgA versus IgG in the control of influenza viral infection in the murine respiratory tract.
Kathryn B Renegar, Parker A Small, Lou G Boykins, Peter F Wright. J Immunol 2004
262
33

Sendai virus as a backbone for vaccines against RSV and other human paramyxoviruses.
Charles J Russell, Julia L Hurwitz. Expert Rev Vaccines 2016
22
33


Parainfluenza virus infection among adults hospitalized for lower respiratory tract infection.
A Marx, H E Gary, B J Marston, D D Erdman, R F Breiman, T J Török, J F Plouffe, T M File, L J Anderson. Clin Infect Dis 1999
69
33


Initial viral load determines the magnitude of the human CD8 T cell response to yellow fever vaccination.
Rama S Akondy, Philip L F Johnson, Helder I Nakaya, Srilatha Edupuganti, Mark J Mulligan, Benton Lawson, Joseph D Miller, Bali Pulendran, Rustom Antia, Rafi Ahmed. Proc Natl Acad Sci U S A 2015
71
33

The Role of Human Parainfluenza Virus Infections in the Immunopathology of the Respiratory Tract.
Malgorzata Pawełczyk, Marek Leszek Kowalski. Curr Allergy Asthma Rep 2017
33
33


Biology of parainfluenza viruses.
R Vainionpää, T Hyypiä. Clin Microbiol Rev 1994
41
33

Timing of antiviral treatment initiation is critical to reduce SARS-CoV-2 viral load.
Antonio Gonçalves, Julie Bertrand, Ruian Ke, Emmanuelle Comets, Xavier de Lamballerie, Denis Malvy, Andrés Pizzorno, Olivier Terrier, Manuel Rosa Calatrava, France Mentré,[...]. medRxiv 2020
8
33

HIV-1 dynamics in vivo: virion clearance rate, infected cell life-span, and viral generation time.
A S Perelson, A U Neumann, M Markowitz, J M Leonard, D D Ho. Science 1996
33

Clinical benefit of remdesivir in rhesus macaques infected with SARS-CoV-2.
Brandi N Williamson, Friederike Feldmann, Benjamin Schwarz, Kimberly Meade-White, Danielle P Porter, Jonathan Schulz, Neeltje van Doremalen, Ian Leighton, Claude Kwe Yinda, Lizzette Pérez-Pérez,[...]. bioRxiv 2020
55
33


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.